RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 ATP5IP56385 69 aaPredicted RBP15.04■□□□□ -0
CLK3-225ENST00000569063 PAFAH1B2P68402 229 aa15.04■□□□□ -0
CLK3-225ENST00000569063 RBMS2Q15434 407 aaKnown RBP15.04■□□□□ -0
CLK3-225ENST00000569063 CENPSQ8N2Z9 138 aa15.04■□□□□ -0
CLK3-225ENST00000569063 OR1S1Q8NH92 325 aa15.04■□□□□ -0
CLK3-225ENST00000569063 METTL26Q96S19 204 aa15.04■□□□□ -0
CLK3-225ENST00000569063 OVOL2Q9BRP0 275 aa15.04■□□□□ -0
CLK3-225ENST00000569063 TMEM231Q9H6L2 316 aa15.04■□□□□ -0
CLK3-225ENST00000569063 IGKV3-7A0A075B6H7 116 aa15.03■□□□□ -0
CLK3-225ENST00000569063 IGHV3-66A0A0C4DH42 116 aa15.03■□□□□ -0
CLK3-225ENST00000569063 KIR2DL5BA0A0G2JN68 375 aa15.03■□□□□ -0
CLK3-225ENST00000569063 KIR2DL5BA0A0G2JPC4 375 aa15.03■□□□□ -0
CLK3-225ENST00000569063 A0A1W2PS18 150 aa15.03■□□□□ -0
CLK3-225ENST00000569063 NAP1L6A6NFF2 107 aa15.03■□□□□ -0
CLK3-225ENST00000569063 DFFBO76075 338 aa15.03■□□□□ -0
CLK3-225ENST00000569063 OR10J1P30954 320 aa15.03■□□□□ -0
CLK3-225ENST00000569063 TFPI2P48307 235 aa15.03■□□□□ -0
CLK3-225ENST00000569063 YPEL3P61236 119 aaPredicted RBP15.03■□□□□ -0
CLK3-225ENST00000569063 PPP1R1AQ13522 171 aa15.03■□□□□ -0
CLK3-225ENST00000569063 TRIQKQ629K1 86 aa15.03■□□□□ -0
CLK3-225ENST00000569063 KIR2DL5AQ8N109 375 aa15.03■□□□□ -0
CLK3-225ENST00000569063 KIR2DL5BQ8NHK3 375 aa15.03■□□□□ -0
CLK3-225ENST00000569063 NDUFA13Q9P0J0 144 aa15.03■□□□□ -0
CLK3-225ENST00000569063 TRAV2A0A0B4J234 112 aa15.02■□□□□ -0
CLK3-225ENST00000569063 UBE2CO00762 179 aa15.02■□□□□ -0
CLK3-225ENST00000569063 INPP1P49441 399 aa15.02■□□□□ -0
CLK3-225ENST00000569063 UBE2MP61081 183 aaKnown RBP15.02■□□□□ -0
CLK3-225ENST00000569063 ZFAND6Q6FIF0 208 aa15.02■□□□□ -0
CLK3-225ENST00000569063 Q6ZWC4 215 aa15.02■□□□□ -0
CLK3-225ENST00000569063 APRG1Q8IVJ8 170 aa15.02■□□□□ -0
CLK3-225ENST00000569063 GBGT1Q8N5D6 347 aa15.02■□□□□ -0
CLK3-225ENST00000569063 Q8WTZ3 238 aa15.02■□□□□ -0
CLK3-225ENST00000569063 NPIPB3Q92617 1050 aa15.02■□□□□ -0
CLK3-225ENST00000569063 SDHCQ99643 169 aaPredicted RBP15.02■□□□□ -0
CLK3-225ENST00000569063 MS4A6AQ9H2W1 248 aa15.02■□□□□ -0
CLK3-225ENST00000569063 TMED3Q9Y3Q3 217 aa15.02■□□□□ -0
CLK3-225ENST00000569063 TP53TG1Q9Y2A0 90 aa15.01□□□□□ -0.01
CLK3-225ENST00000569063 FAM90A26D6RGX4 464 aa15□□□□□ -0.01
CLK3-225ENST00000569063 NDUFB6O95139 128 aa15□□□□□ -0.01
CLK3-225ENST00000569063 WFDC3Q8IUB2 231 aa15□□□□□ -0.01
CLK3-225ENST00000569063 IL17DQ8TAD2 202 aa15□□□□□ -0.01
CLK3-225ENST00000569063 NARS2Q96I59 477 aaKnown RBP15□□□□□ -0.01
CLK3-225ENST00000569063 MAP6D1Q9H9H5 199 aa15□□□□□ -0.01
CLK3-225ENST00000569063 U3KQE9 123 aa15□□□□□ -0.01
CLK3-225ENST00000569063 DNASE2O00115 360 aaPredicted RBP14.99□□□□□ -0.01
CLK3-225ENST00000569063 IFNA4P05014 189 aa14.99□□□□□ -0.01
CLK3-225ENST00000569063 GPX4P36969 197 aaPredicted RBP14.99□□□□□ -0.01
CLK3-225ENST00000569063 P2RY1P47900 373 aa14.99□□□□□ -0.01
CLK3-225ENST00000569063 RPL11P62913 178 aaKnown RBP14.99□□□□□ -0.01
CLK3-225ENST00000569063 ZNF124Q15973 351 aa14.99□□□□□ -0.01
CLK3-225ENST00000569063 STPG3Q8N7X2 389 aa14.99□□□□□ -0.01
CLK3-225ENST00000569063 ACY3Q96HD9 319 aa14.99□□□□□ -0.01
CLK3-225ENST00000569063 SPRY2O43597 315 aa14.98□□□□□ -0.01
CLK3-225ENST00000569063 MED6O75586 246 aa14.98□□□□□ -0.01
CLK3-225ENST00000569063 TOMM40O96008 361 aa14.98□□□□□ -0.01
CLK3-225ENST00000569063 RPL35AP18077 110 aaKnown RBP14.98□□□□□ -0.01
CLK3-225ENST00000569063 GRAMD2BQ96HH9 432 aa14.98□□□□□ -0.01
CLK3-225ENST00000569063 C9orf170A2RU37 121 aa14.97□□□□□ -0.01
CLK3-225ENST00000569063 CENPXA8MT69 81 aa14.97□□□□□ -0.01
CLK3-225ENST00000569063 HNRNPCP07910 306 aaKnown RBP eCLIP14.97□□□□□ -0.01
CLK3-225ENST00000569063 HOXB5P09067 269 aa14.97□□□□□ -0.01
CLK3-225ENST00000569063 RD3LP0DJH9 198 aa14.97□□□□□ -0.01
CLK3-225ENST00000569063 C7orf50Q9BRJ6 194 aaKnown RBP14.97□□□□□ -0.01
CLK3-225ENST00000569063 IL4P05112 153 aa14.96□□□□□ -0.01
CLK3-225ENST00000569063 IL7P13232 177 aa14.96□□□□□ -0.01
CLK3-225ENST00000569063 BTCP35070 178 aa14.96□□□□□ -0.01
CLK3-225ENST00000569063 GAMTQ14353 236 aa14.96□□□□□ -0.01
CLK3-225ENST00000569063 USF2Q15853 346 aaPredicted RBP14.96□□□□□ -0.01
CLK3-225ENST00000569063 DEFB135Q30KP9 77 aa14.96□□□□□ -0.01
CLK3-225ENST00000569063 GGNBP1Q5YKI7 109 aa14.96□□□□□ -0.01
CLK3-225ENST00000569063 RNF183Q96D59 192 aa14.96□□□□□ -0.01
CLK3-225ENST00000569063 CIB3Q96Q77 187 aaPredicted RBP14.96□□□□□ -0.01
CLK3-225ENST00000569063 FLVCR2Q9UPI3 526 aa14.96□□□□□ -0.01
CLK3-225ENST00000569063 LINC00854A0A1B0GVQ3 168 aa14.95□□□□□ -0.02
CLK3-225ENST00000569063 K7EQG2 157 aa14.95□□□□□ -0.02
CLK3-225ENST00000569063 SYNGR2O43760 224 aa14.95□□□□□ -0.02
CLK3-225ENST00000569063 IAPPP10997 89 aa14.95□□□□□ -0.02
CLK3-225ENST00000569063 PSG1P11464 419 aa14.95□□□□□ -0.02
CLK3-225ENST00000569063 RAB11AP62491 216 aa14.95□□□□□ -0.02
CLK3-225ENST00000569063 C16orf54Q6UWD8 224 aa14.95□□□□□ -0.02
CLK3-225ENST00000569063 FAM24BQ8N5W8 94 aa14.95□□□□□ -0.02
CLK3-225ENST00000569063 CSTL1Q9H114 145 aa14.95□□□□□ -0.02
CLK3-225ENST00000569063 RABAC1Q9UI14 185 aa14.95□□□□□ -0.02
CLK3-225ENST00000569063 RYR3Q15413 4870 aa14.95□□□□□ -0.02
CLK3-225ENST00000569063 CSMD3Q7Z407 3707 aa14.95□□□□□ -0.02
CLK3-225ENST00000569063 OR4E1P0C645 316 aa14.94□□□□□ -0.02
CLK3-225ENST00000569063 EIF2B2P49770 351 aaKnown RBP14.94□□□□□ -0.02
CLK3-225ENST00000569063 AP2S1P53680 142 aaPredicted RBP14.94□□□□□ -0.02
CLK3-225ENST00000569063 DEFB131AP59861 70 aa14.94□□□□□ -0.02
CLK3-225ENST00000569063 RPP30P78346 268 aaKnown RBP14.94□□□□□ -0.02
CLK3-225ENST00000569063 DHRS2Q13268 280 aa14.94□□□□□ -0.02
CLK3-225ENST00000569063 STXBP6Q8NFX7 210 aa14.94□□□□□ -0.02
CLK3-225ENST00000569063 DCANP1Q8TF63 244 aa14.94□□□□□ -0.02
CLK3-225ENST00000569063 GLMPQ8WWB7 406 aa14.94□□□□□ -0.02
CLK3-225ENST00000569063 SLC35E1Q96K37 410 aa14.94□□□□□ -0.02
CLK3-225ENST00000569063 IGKV1D-37A0A075B6S9 117 aa14.93□□□□□ -0.02
CLK3-225ENST00000569063 HELTA6NFD8 242 aa14.93□□□□□ -0.02
CLK3-225ENST00000569063 MPTX1A8MV57 137 aa14.93□□□□□ -0.02
CLK3-225ENST00000569063 CNPY1Q3B7I2 92 aa14.93□□□□□ -0.02
CLK3-225ENST00000569063 LYG2Q86SG7 212 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms