RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 RPP25LQ8N5L8 163 aaKnown RBP13.65□□□□□ -0.22
CLN3-218ENST00000565688 LHFPL5Q8TAF8 219 aa13.65□□□□□ -0.22
CLN3-218ENST00000565688 C2CD4CQ8TF44 421 aa13.65□□□□□ -0.22
CLN3-218ENST00000565688 DCANP1Q8TF63 244 aa13.65□□□□□ -0.22
CLN3-218ENST00000565688 HRH4Q9H3N8 390 aa13.65□□□□□ -0.22
CLN3-218ENST00000565688 CRYM-AS1A6NIL9 109 aa13.64□□□□□ -0.23
CLN3-218ENST00000565688 CEBPZOSA8MTT3 80 aa13.64□□□□□ -0.23
CLN3-218ENST00000565688 DEFB4AO15263 64 aa13.64□□□□□ -0.23
CLN3-218ENST00000565688 ZNF688P0C7X2 276 aa13.64□□□□□ -0.23
CLN3-218ENST00000565688 IGLC1P0CG04 106 aa13.64□□□□□ -0.23
CLN3-218ENST00000565688 AKAIN1P0CW23 69 aa13.64□□□□□ -0.23
CLN3-218ENST00000565688 OR10J1P30954 320 aa13.64□□□□□ -0.23
CLN3-218ENST00000565688 RND2P52198 227 aa13.64□□□□□ -0.23
CLN3-218ENST00000565688 AP2S1P53680 142 aaPredicted RBP13.64□□□□□ -0.23
CLN3-218ENST00000565688 TMEM268Q5VZI3 342 aa13.64□□□□□ -0.23
CLN3-218ENST00000565688 ETFRF1Q6IPR1 90 aa13.64□□□□□ -0.23
CLN3-218ENST00000565688 FAAP20Q6NZ36 180 aa13.64□□□□□ -0.23
CLN3-218ENST00000565688 GPR141Q7Z602 305 aa13.64□□□□□ -0.23
CLN3-218ENST00000565688 SLC24A4Q8NFF2 622 aa13.64□□□□□ -0.23
CLN3-218ENST00000565688 PRRT1Q99946 306 aa13.64□□□□□ -0.23
CLN3-218ENST00000565688 U3KQE9 123 aa13.64□□□□□ -0.23
CLN3-218ENST00000565688 C11orf94C9JXX5 98 aa13.63□□□□□ -0.23
CLN3-218ENST00000565688 CTDSP2O14595 271 aa13.63□□□□□ -0.23
CLN3-218ENST00000565688 CTDSPLO15194 276 aa13.63□□□□□ -0.23
CLN3-218ENST00000565688 HNRNPCP07910 306 aaKnown RBP eCLIP13.63□□□□□ -0.23
CLN3-218ENST00000565688 GIG44P09565 113 aaPredicted RBP13.63□□□□□ -0.23
CLN3-218ENST00000565688 MIFP14174 115 aa13.63□□□□□ -0.23
CLN3-218ENST00000565688 Q8NAQ8 132 aa13.63□□□□□ -0.23
CLN3-218ENST00000565688 OR4C16Q8NGL9 310 aa13.63□□□□□ -0.23
CLN3-218ENST00000565688 GPR146Q96CH1 333 aa13.63□□□□□ -0.23
CLN3-218ENST00000565688 MRPS26Q9BYN8 205 aaKnown RBP13.63□□□□□ -0.23
CLN3-218ENST00000565688 GPR132Q9UNW8 380 aa13.63□□□□□ -0.23
CLN3-218ENST00000565688 TMEM56-RWDD3S4R434 201 aa13.63□□□□□ -0.23
CLN3-218ENST00000565688 KMT2AQ03164 3969 aa13.63□□□□□ -0.23
CLN3-218ENST00000565688 FRAS1Q86XX4 4008 aa13.63□□□□□ -0.23
CLN3-218ENST00000565688 DEDDO75618 318 aa13.62□□□□□ -0.23
CLN3-218ENST00000565688 DHRS2Q13268 280 aa13.62□□□□□ -0.23
CLN3-218ENST00000565688 C16orf54Q6UWD8 224 aa13.62□□□□□ -0.23
CLN3-218ENST00000565688 GLMPQ8WWB7 406 aa13.62□□□□□ -0.23
CLN3-218ENST00000565688 IL22RA2Q969J5 263 aa13.62□□□□□ -0.23
CLN3-218ENST00000565688 KCNIP3Q9Y2W7 256 aa13.62□□□□□ -0.23
CLN3-218ENST00000565688 KNCNA6PVL3 124 aa13.61□□□□□ -0.23
CLN3-218ENST00000565688 SULT1A3P0DMM9 295 aa13.61□□□□□ -0.23
CLN3-218ENST00000565688 SULT1A4P0DMN0 295 aa13.61□□□□□ -0.23
CLN3-218ENST00000565688 NPY1RP25929 384 aa13.61□□□□□ -0.23
CLN3-218ENST00000565688 IL18Q14116 193 aa13.61□□□□□ -0.23
CLN3-218ENST00000565688 ACTL10Q5JWF8 245 aa13.61□□□□□ -0.23
CLN3-218ENST00000565688 CENPSQ8N2Z9 138 aa13.61□□□□□ -0.23
CLN3-218ENST00000565688 DIRAS2Q96HU8 199 aa13.61□□□□□ -0.23
CLN3-218ENST00000565688 IGHV4-28A0A0C4DH34 117 aa13.6□□□□□ -0.23
CLN3-218ENST00000565688 ZNF705EA8MWA4 302 aaPredicted RBP13.6□□□□□ -0.23
CLN3-218ENST00000565688 GSTZ1O43708 216 aaPredicted RBP13.6□□□□□ -0.23
CLN3-218ENST00000565688 IL4P05112 153 aa13.6□□□□□ -0.23
CLN3-218ENST00000565688 ALDH3B2P48448 385 aa13.6□□□□□ -0.23
CLN3-218ENST00000565688 SNRPD3P62318 126 aaKnown RBP13.6□□□□□ -0.23
CLN3-218ENST00000565688 SPCS2Q15005 226 aa13.6□□□□□ -0.23
CLN3-218ENST00000565688 NMSQ5H8A3 153 aa13.6□□□□□ -0.23
CLN3-218ENST00000565688 CLVS1Q8IUQ0 354 aaPredicted RBP13.6□□□□□ -0.23
CLN3-218ENST00000565688 OR51S1Q8NGJ8 323 aa13.6□□□□□ -0.23
CLN3-218ENST00000565688 SCGB3A2Q96PL1 93 aa13.6□□□□□ -0.23
CLN3-218ENST00000565688 RAB40CQ96S21 281 aa13.6□□□□□ -0.23
CLN3-218ENST00000565688 SEPSECSQ9HD40 501 aaKnown RBP13.6□□□□□ -0.23
CLN3-218ENST00000565688 RBMY1A1P0DJD3 496 aaKnown RBP13.59□□□□□ -0.23
CLN3-218ENST00000565688 RBMY1CP0DJD4 496 aa13.59□□□□□ -0.23
CLN3-218ENST00000565688 RD3LP0DJH9 198 aa13.59□□□□□ -0.23
CLN3-218ENST00000565688 C4BPBP20851 252 aa13.59□□□□□ -0.23
CLN3-218ENST00000565688 RBMY1FQ15415 496 aaKnown RBP13.59□□□□□ -0.23
CLN3-218ENST00000565688 PSMG4Q5JS54 123 aa13.59□□□□□ -0.23
CLN3-218ENST00000565688 TMEM170AQ8WVE7 144 aa13.59□□□□□ -0.23
CLN3-218ENST00000565688 NPIPB3Q92617 1050 aa13.59□□□□□ -0.23
CLN3-218ENST00000565688 CCDC59Q9P031 241 aaKnown RBP13.59□□□□□ -0.23
CLN3-218ENST00000565688 SCP2D1Q9UJQ7 156 aa13.59□□□□□ -0.23
CLN3-218ENST00000565688 TBC1D24Q9ULP9 559 aa13.59□□□□□ -0.23
CLN3-218ENST00000565688 U3KQ87 197 aa13.59□□□□□ -0.23
CLN3-218ENST00000565688 ANKRD20A5PA0PJZ0 165 aa13.58□□□□□ -0.24
CLN3-218ENST00000565688 IGLL5B9A064 214 aa13.58□□□□□ -0.24
CLN3-218ENST00000565688 TOMM40O96008 361 aa13.58□□□□□ -0.24
CLN3-218ENST00000565688 IFNA10P01566 189 aa13.58□□□□□ -0.24
CLN3-218ENST00000565688 NUTF2P61970 127 aaKnown RBP13.58□□□□□ -0.24
CLN3-218ENST00000565688 USF2Q15853 346 aaPredicted RBP13.58□□□□□ -0.24
CLN3-218ENST00000565688 RAB2BQ8WUD1 216 aa13.58□□□□□ -0.24
CLN3-218ENST00000565688 ACY3Q96HD9 319 aa13.58□□□□□ -0.24
CLN3-218ENST00000565688 C1QTNF4Q9BXJ3 329 aa13.58□□□□□ -0.24
CLN3-218ENST00000565688 NRN1Q9NPD7 142 aa13.58□□□□□ -0.24
CLN3-218ENST00000565688 RSL24D1Q9UHA3 163 aaKnown RBP13.58□□□□□ -0.24
CLN3-218ENST00000565688 AGRNO00468 2067 aa13.57□□□□□ -0.24
CLN3-218ENST00000565688 FAM90A26D6RGX4 464 aa13.57□□□□□ -0.24
CLN3-218ENST00000565688 BUB3O43684 328 aa13.57□□□□□ -0.24
CLN3-218ENST00000565688 NXPH3O95157 252 aa13.57□□□□□ -0.24
CLN3-218ENST00000565688 NUP62P37198 522 aaPredicted RBP13.57□□□□□ -0.24
CLN3-218ENST00000565688 CCR6P51684 374 aa13.57□□□□□ -0.24
CLN3-218ENST00000565688 ATP5IP56385 69 aaPredicted RBP13.57□□□□□ -0.24
CLN3-218ENST00000565688 CSNK1G2-AS1Q8NCQ2 148 aa13.57□□□□□ -0.24
CLN3-218ENST00000565688 BCL7BQ9BQE9 202 aa13.57□□□□□ -0.24
CLN3-218ENST00000565688 HSPB7Q9UBY9 170 aa13.57□□□□□ -0.24
CLN3-218ENST00000565688 PFDN2Q9UHV9 154 aa13.57□□□□□ -0.24
CLN3-218ENST00000565688 X6R8D5 127 aa13.57□□□□□ -0.24
CLN3-218ENST00000565688 TRAV10A0A0B4J240 114 aa13.56□□□□□ -0.24
CLN3-218ENST00000565688 A0A0B4J2A0 478 aa13.56□□□□□ -0.24
CLN3-218ENST00000565688 PIGBOS1A0A0B4J2F0 54 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms