RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 ST8SIA2Q92186 375 aa11.9□□□□□ -0.5
CCDC88C-209ENST00000554872 NDUFA13Q9P0J0 144 aa11.9□□□□□ -0.5
CCDC88C-209ENST00000554872 TMED3Q9Y3Q3 217 aa11.9□□□□□ -0.5
CCDC88C-209ENST00000554872 PAFAH1B2P68402 229 aa11.89□□□□□ -0.51
CCDC88C-209ENST00000554872 MLANAQ16655 118 aa11.89□□□□□ -0.51
CCDC88C-209ENST00000554872 TCF24Q7RTU0 167 aa11.89□□□□□ -0.51
CCDC88C-209ENST00000554872 CENPSQ8N2Z9 138 aa11.89□□□□□ -0.51
CCDC88C-209ENST00000554872 IL17DQ8TAD2 202 aa11.89□□□□□ -0.51
CCDC88C-209ENST00000554872 METTL26Q96S19 204 aa11.89□□□□□ -0.51
CCDC88C-209ENST00000554872 U3KQE9 123 aa11.89□□□□□ -0.51
CCDC88C-209ENST00000554872 DFFBO76075 338 aa11.88□□□□□ -0.51
CCDC88C-209ENST00000554872 SFT2D2O95562 160 aa11.88□□□□□ -0.51
CCDC88C-209ENST00000554872 NPPCP23582 126 aa11.88□□□□□ -0.51
CCDC88C-209ENST00000554872 RND2P52198 227 aa11.88□□□□□ -0.51
CCDC88C-209ENST00000554872 OVOL2Q9BRP0 275 aa11.88□□□□□ -0.51
CCDC88C-209ENST00000554872 RBKSQ9H477 322 aa11.88□□□□□ -0.51
CCDC88C-209ENST00000554872 IGHV3-49A0A0A0MS15 119 aa11.87□□□□□ -0.51
CCDC88C-209ENST00000554872 NDUFB6O95139 128 aa11.87□□□□□ -0.51
CCDC88C-209ENST00000554872 APOHP02749 345 aaPredicted RBP11.87□□□□□ -0.51
CCDC88C-209ENST00000554872 VAMP1P23763 118 aa11.87□□□□□ -0.51
CCDC88C-209ENST00000554872 OR10J1P30954 320 aa11.87□□□□□ -0.51
CCDC88C-209ENST00000554872 PPP1R1AQ13522 171 aa11.87□□□□□ -0.51
CCDC88C-209ENST00000554872 BAK1Q16611 211 aa11.87□□□□□ -0.51
CCDC88C-209ENST00000554872 TIGITQ495A1 244 aa11.87□□□□□ -0.51
CCDC88C-209ENST00000554872 TRIQKQ629K1 86 aa11.87□□□□□ -0.51
CCDC88C-209ENST00000554872 SDHCQ99643 169 aaPredicted RBP11.87□□□□□ -0.51
CCDC88C-209ENST00000554872 C7orf50Q9BRJ6 194 aaKnown RBP11.87□□□□□ -0.51
CCDC88C-209ENST00000554872 UBQLN2Q9UHD9 624 aa11.87□□□□□ -0.51
CCDC88C-209ENST00000554872 IFNA10P01566 189 aa11.86□□□□□ -0.51
CCDC88C-209ENST00000554872 GPX4P36969 197 aaPredicted RBP11.86□□□□□ -0.51
CCDC88C-209ENST00000554872 LILRB2Q8N423 598 aa11.86□□□□□ -0.51
CCDC88C-209ENST00000554872 OR1S1Q8NH92 325 aa11.86□□□□□ -0.51
CCDC88C-209ENST00000554872 Q8WTZ3 238 aa11.86□□□□□ -0.51
CCDC88C-209ENST00000554872 NARS2Q96I59 477 aaKnown RBP11.86□□□□□ -0.51
CCDC88C-209ENST00000554872 MS4A6AQ9H2W1 248 aa11.86□□□□□ -0.51
CCDC88C-209ENST00000554872 MAP6D1Q9H9H5 199 aa11.86□□□□□ -0.51
CCDC88C-209ENST00000554872 IGHV3OR16-13A0A075B7E8 117 aa11.85□□□□□ -0.51
CCDC88C-209ENST00000554872 IGHV3-74A0A0B4J1X5 117 aa11.85□□□□□ -0.51
CCDC88C-209ENST00000554872 MED6O75586 246 aa11.85□□□□□ -0.51
CCDC88C-209ENST00000554872 NXPH3O95157 252 aa11.85□□□□□ -0.51
CCDC88C-209ENST00000554872 TOMM40O96008 361 aa11.85□□□□□ -0.51
CCDC88C-209ENST00000554872 ATF4P18848 351 aaPredicted RBP11.85□□□□□ -0.51
CCDC88C-209ENST00000554872 CNPY1Q3B7I2 92 aa11.85□□□□□ -0.51
CCDC88C-209ENST00000554872 STPG3Q8N7X2 389 aa11.85□□□□□ -0.51
CCDC88C-209ENST00000554872 GRAMD2BQ96HH9 432 aa11.85□□□□□ -0.51
CCDC88C-209ENST00000554872 CIB3Q96Q77 187 aaPredicted RBP11.85□□□□□ -0.51
CCDC88C-209ENST00000554872 RYR3Q15413 4870 aa11.85□□□□□ -0.51
CCDC88C-209ENST00000554872 STARD9Q9P2P6 4700 aa11.85□□□□□ -0.51
CCDC88C-209ENST00000554872 TENM2Q9NT68 2774 aa11.84□□□□□ -0.51
CCDC88C-209ENST00000554872 P2RY1P47900 373 aa11.84□□□□□ -0.51
CCDC88C-209ENST00000554872 INPP1P49441 399 aa11.84□□□□□ -0.51
CCDC88C-209ENST00000554872 EIF2B2P49770 351 aaKnown RBP11.84□□□□□ -0.51
CCDC88C-209ENST00000554872 NPIPB3Q92617 1050 aa11.84□□□□□ -0.51
CCDC88C-209ENST00000554872 RNF183Q96D59 192 aa11.84□□□□□ -0.51
CCDC88C-209ENST00000554872 C9orf170A2RU37 121 aa11.83□□□□□ -0.52
CCDC88C-209ENST00000554872 HELTA6NFD8 242 aa11.83□□□□□ -0.52
CCDC88C-209ENST00000554872 K7EQG2 157 aa11.83□□□□□ -0.52
CCDC88C-209ENST00000554872 SPRY2O43597 315 aa11.83□□□□□ -0.52
CCDC88C-209ENST00000554872 HNRNPCP07910 306 aaKnown RBP eCLIP11.83□□□□□ -0.52
CCDC88C-209ENST00000554872 BTCP35070 178 aa11.83□□□□□ -0.52
CCDC88C-209ENST00000554872 NUP62P37198 522 aaPredicted RBP11.83□□□□□ -0.52
CCDC88C-209ENST00000554872 LINC00299Q6ZSB3 139 aa11.83□□□□□ -0.52
CCDC88C-209ENST00000554872 APRG1Q8IVJ8 170 aa11.83□□□□□ -0.52
CCDC88C-209ENST00000554872 GLMPQ8WWB7 406 aa11.83□□□□□ -0.52
CCDC88C-209ENST00000554872 CENPXA8MT69 81 aa11.82□□□□□ -0.52
CCDC88C-209ENST00000554872 DNASE2O00115 360 aaPredicted RBP11.82□□□□□ -0.52
CCDC88C-209ENST00000554872 IFNA4P05014 189 aa11.82□□□□□ -0.52
CCDC88C-209ENST00000554872 RD3LP0DJH9 198 aa11.82□□□□□ -0.52
CCDC88C-209ENST00000554872 IL7P13232 177 aa11.82□□□□□ -0.52
CCDC88C-209ENST00000554872 TFPI2P48307 235 aa11.82□□□□□ -0.52
CCDC88C-209ENST00000554872 AP2S1P53680 142 aaPredicted RBP11.82□□□□□ -0.52
CCDC88C-209ENST00000554872 RAB11AP62491 216 aa11.82□□□□□ -0.52
CCDC88C-209ENST00000554872 GAMTQ14353 236 aa11.82□□□□□ -0.52
CCDC88C-209ENST00000554872 USF2Q15853 346 aaPredicted RBP11.82□□□□□ -0.52
CCDC88C-209ENST00000554872 OR8G2PQ6IF36 304 aa11.82□□□□□ -0.52
CCDC88C-209ENST00000554872 C16orf54Q6UWD8 224 aa11.82□□□□□ -0.52
CCDC88C-209ENST00000554872 GBGT1Q8N5D6 347 aa11.82□□□□□ -0.52
CCDC88C-209ENST00000554872 DCANP1Q8TF63 244 aa11.82□□□□□ -0.52
CCDC88C-209ENST00000554872 GATAD1Q8WUU5 269 aa11.82□□□□□ -0.52
CCDC88C-209ENST00000554872 ACY3Q96HD9 319 aa11.82□□□□□ -0.52
CCDC88C-209ENST00000554872 CSTL1Q9H114 145 aa11.82□□□□□ -0.52
CCDC88C-209ENST00000554872 SEPSECSQ9HD40 501 aaKnown RBP11.82□□□□□ -0.52
CCDC88C-209ENST00000554872 DYNC2H1Q8NCM8 4307 aaKnown RBP11.82□□□□□ -0.52
CCDC88C-209ENST00000554872 IGKV3-7A0A075B6H7 116 aa11.81□□□□□ -0.52
CCDC88C-209ENST00000554872 IGHV3-66A0A0C4DH42 116 aa11.81□□□□□ -0.52
CCDC88C-209ENST00000554872 LCE6AA0A183 80 aa11.81□□□□□ -0.52
CCDC88C-209ENST00000554872 SYNGR2O43760 224 aa11.81□□□□□ -0.52
CCDC88C-209ENST00000554872 IL4P05112 153 aa11.81□□□□□ -0.52
CCDC88C-209ENST00000554872 RPP30P78346 268 aaKnown RBP11.81□□□□□ -0.52
CCDC88C-209ENST00000554872 DHRS2Q13268 280 aa11.81□□□□□ -0.52
CCDC88C-209ENST00000554872 DEFB135Q30KP9 77 aa11.81□□□□□ -0.52
CCDC88C-209ENST00000554872 GGNBP1Q5YKI7 109 aa11.81□□□□□ -0.52
CCDC88C-209ENST00000554872 ZFAND6Q6FIF0 208 aa11.81□□□□□ -0.52
CCDC88C-209ENST00000554872 LYG2Q86SG7 212 aa11.81□□□□□ -0.52
CCDC88C-209ENST00000554872 OR51G1Q8NGK1 321 aa11.81□□□□□ -0.52
CCDC88C-209ENST00000554872 COQ8AQ8NI60 647 aa11.81□□□□□ -0.52
CCDC88C-209ENST00000554872 SLC35E1Q96K37 410 aa11.81□□□□□ -0.52
CCDC88C-209ENST00000554872 LYSTQ99698 3801 aa11.81□□□□□ -0.52
CCDC88C-209ENST00000554872 IGKV1D-37A0A075B6S9 117 aa11.8□□□□□ -0.52
CCDC88C-209ENST00000554872 MPTX1A8MV57 137 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms