RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 TMEM14DPA8MWL7 114 aa7.35□□□□□ -1.23
LIMCH1-218ENST00000513024 IL6RP08887 468 aaPredicted RBP7.35□□□□□ -1.23
LIMCH1-218ENST00000513024 RRN3P1Q2M238 152 aa7.35□□□□□ -1.23
LIMCH1-218ENST00000513024 SLC25A28Q96A46 364 aa7.35□□□□□ -1.23
LIMCH1-218ENST00000513024 CCL13Q99616 98 aa7.35□□□□□ -1.23
LIMCH1-218ENST00000513024 DLL3Q9NYJ7 618 aa7.35□□□□□ -1.23
LIMCH1-218ENST00000513024 V9GYY9 64 aa7.35□□□□□ -1.23
LIMCH1-218ENST00000513024 MGST3O14880 152 aa7.34□□□□□ -1.23
LIMCH1-218ENST00000513024 THY1P04216 161 aa7.34□□□□□ -1.23
LIMCH1-218ENST00000513024 MPV17P39210 176 aa7.34□□□□□ -1.23
LIMCH1-218ENST00000513024 GNG5P63218 68 aa7.34□□□□□ -1.23
LIMCH1-218ENST00000513024 MESP2Q0VG99 397 aa7.34□□□□□ -1.23
LIMCH1-218ENST00000513024 FAM159AQ6UWV7 190 aa7.34□□□□□ -1.23
LIMCH1-218ENST00000513024 ZNF645Q8N7E2 425 aa7.34□□□□□ -1.23
LIMCH1-218ENST00000513024 FAM168AQ92567 244 aa7.34□□□□□ -1.23
LIMCH1-218ENST00000513024 ZNF703Q9H7S9 590 aaPredicted RBP7.34□□□□□ -1.23
LIMCH1-218ENST00000513024 SELLP14151 372 aa7.34□□□□□ -1.23
LIMCH1-218ENST00000513024 IFI27P40305 119 aaPredicted RBP7.34□□□□□ -1.23
LIMCH1-218ENST00000513024 HERV-K104P63124 156 aa7.34□□□□□ -1.23
LIMCH1-218ENST00000513024 FMC1Q96HJ9 113 aa7.34□□□□□ -1.23
LIMCH1-218ENST00000513024 Q96M66 194 aa7.34□□□□□ -1.23
LIMCH1-218ENST00000513024 CHAC1Q9BUX1 264 aa7.34□□□□□ -1.23
LIMCH1-218ENST00000513024 LAMTOR3Q9UHA4 124 aa7.34□□□□□ -1.23
LIMCH1-218ENST00000513024 TCF19Q9Y242 345 aa7.34□□□□□ -1.23
LIMCH1-218ENST00000513024 CADP27708 2225 aa7.34□□□□□ -1.23
LIMCH1-218ENST00000513024 A0A0G2JK05 382 aa7.34□□□□□ -1.23
LIMCH1-218ENST00000513024 SYS1-DBNDD2H3BUS1 97 aa7.34□□□□□ -1.23
LIMCH1-218ENST00000513024 CEACAM8P31997 349 aaPredicted RBP7.34□□□□□ -1.23
LIMCH1-218ENST00000513024 ANXA2RQ3ZCQ2 193 aa7.34□□□□□ -1.23
LIMCH1-218ENST00000513024 GATD1Q8NB37 220 aa7.34□□□□□ -1.23
LIMCH1-218ENST00000513024 ARPC1AQ92747 370 aa7.34□□□□□ -1.23
LIMCH1-218ENST00000513024 NPIPB11E5RHQ5 1161 aa7.34□□□□□ -1.23
LIMCH1-218ENST00000513024 FAM106CPP0CH98 169 aa7.34□□□□□ -1.23
LIMCH1-218ENST00000513024 SLC25A53Q5H9E4 307 aa7.34□□□□□ -1.23
LIMCH1-218ENST00000513024 TMEM86BQ8N661 226 aa7.34□□□□□ -1.23
LIMCH1-218ENST00000513024 REG4Q9BYZ8 158 aa7.34□□□□□ -1.23
LIMCH1-218ENST00000513024 MYO16Q9Y6X6 1858 aa7.34□□□□□ -1.24
LIMCH1-218ENST00000513024 B9A039 149 aa7.33□□□□□ -1.24
LIMCH1-218ENST00000513024 CD33P20138 364 aa7.33□□□□□ -1.24
LIMCH1-218ENST00000513024 CRYBA4P53673 196 aa7.33□□□□□ -1.24
LIMCH1-218ENST00000513024 SYNJ2BPP57105 145 aa7.33□□□□□ -1.24
LIMCH1-218ENST00000513024 LY6DQ14210 128 aa7.33□□□□□ -1.24
LIMCH1-218ENST00000513024 C5orf47Q569G3 176 aa7.33□□□□□ -1.24
LIMCH1-218ENST00000513024 LEAP2Q969E1 77 aa7.33□□□□□ -1.24
LIMCH1-218ENST00000513024 ROS1P08922 2347 aa7.33□□□□□ -1.24
LIMCH1-218ENST00000513024 DOCK9Q9BZ29 2069 aa7.33□□□□□ -1.24
LIMCH1-218ENST00000513024 CACNA1EQ15878 2313 aa7.33□□□□□ -1.24
LIMCH1-218ENST00000513024 TRAV26-1A0A087WT03 109 aa7.33□□□□□ -1.24
LIMCH1-218ENST00000513024 FAM90A10PA6NDY2 464 aa7.33□□□□□ -1.24
LIMCH1-218ENST00000513024 FAM90A18PA6NE21 464 aa7.33□□□□□ -1.24
LIMCH1-218ENST00000513024 FAM90A16PA6NEW6 464 aa7.33□□□□□ -1.24
LIMCH1-218ENST00000513024 FAM90A20PA6NIJ5 464 aa7.33□□□□□ -1.24
LIMCH1-218ENST00000513024 FAM90A8PA6NJQ4 464 aa7.33□□□□□ -1.24
LIMCH1-218ENST00000513024 FAM90A7PA6NKC0 464 aa7.33□□□□□ -1.24
LIMCH1-218ENST00000513024 FOXI3A8MTJ6 420 aaPredicted RBP7.33□□□□□ -1.24
LIMCH1-218ENST00000513024 FAM90A22PA8MWA6 464 aa7.33□□□□□ -1.24
LIMCH1-218ENST00000513024 FAM90A12PA8MX19 464 aa7.33□□□□□ -1.24
LIMCH1-218ENST00000513024 FAM90A5PA8MXJ8 464 aa7.33□□□□□ -1.24
LIMCH1-218ENST00000513024 FAM90A23PA8MXZ1 464 aa7.33□□□□□ -1.24
LIMCH1-218ENST00000513024 FAM90A15PP0C7V4 464 aa7.33□□□□□ -1.24
LIMCH1-218ENST00000513024 FAM90A13PP0C7W8 464 aa7.33□□□□□ -1.24
LIMCH1-218ENST00000513024 FAM90A14PP0C7W9 464 aa7.33□□□□□ -1.24
LIMCH1-218ENST00000513024 FAM90A24PP0C7X0 464 aa7.33□□□□□ -1.24
LIMCH1-218ENST00000513024 ZNF688P0C7X2 276 aa7.33□□□□□ -1.24
LIMCH1-218ENST00000513024 UTF1Q5T230 341 aa7.33□□□□□ -1.24
LIMCH1-218ENST00000513024 DRAM1Q8N682 238 aa7.33□□□□□ -1.24
LIMCH1-218ENST00000513024 NPIPB3Q92617 1050 aa7.33□□□□□ -1.24
LIMCH1-218ENST00000513024 DPH3Q96FX2 82 aa7.33□□□□□ -1.24
LIMCH1-218ENST00000513024 INTS1Q8N201 2190 aaKnown RBP7.33□□□□□ -1.24
LIMCH1-218ENST00000513024 PTPRDP23468 1912 aa7.33□□□□□ -1.24
LIMCH1-218ENST00000513024 HEATR5BQ9P2D3 2071 aa7.33□□□□□ -1.24
LIMCH1-218ENST00000513024 C4orf51C9J302 202 aa7.33□□□□□ -1.24
LIMCH1-218ENST00000513024 WNT9BO14905 357 aa7.33□□□□□ -1.24
LIMCH1-218ENST00000513024 ASIPP42127 132 aa7.33□□□□□ -1.24
LIMCH1-218ENST00000513024 SLC25A47Q6Q0C1 308 aa7.33□□□□□ -1.24
LIMCH1-218ENST00000513024 SLX1AQ9BQ83 275 aa7.33□□□□□ -1.24
LIMCH1-218ENST00000513024 TTTY12Q9BZ98 90 aa7.33□□□□□ -1.24
LIMCH1-218ENST00000513024 PILRAQ9UKJ1 303 aa7.33□□□□□ -1.24
LIMCH1-218ENST00000513024 CREBBPQ92793 2442 aa7.33□□□□□ -1.24
LIMCH1-218ENST00000513024 HTTP42858 3142 aa7.33□□□□□ -1.24
LIMCH1-218ENST00000513024 IGKV1D-42A0A075B6H8 117 aa7.33□□□□□ -1.24
LIMCH1-218ENST00000513024 CEACAM4O75871 244 aa7.33□□□□□ -1.24
LIMCH1-218ENST00000513024 IGFBP2P18065 325 aa7.33□□□□□ -1.24
LIMCH1-218ENST00000513024 FAM214BQ7L5A3 538 aa7.33□□□□□ -1.24
LIMCH1-218ENST00000513024 C1QL2Q7Z5L3 287 aa7.33□□□□□ -1.24
LIMCH1-218ENST00000513024 MRPL27Q9P0M9 148 aaKnown RBP7.33□□□□□ -1.24
LIMCH1-218ENST00000513024 LOC101059948A0A1B0GTJ6 334 aa7.32□□□□□ -1.24
LIMCH1-218ENST00000513024 CELA2AP08217 269 aa7.32□□□□□ -1.24
LIMCH1-218ENST00000513024 CELA3AP09093 270 aa7.32□□□□□ -1.24
LIMCH1-218ENST00000513024 PLAURQ03405 335 aa7.32□□□□□ -1.24
LIMCH1-218ENST00000513024 RBMY1FQ15415 496 aaKnown RBP7.32□□□□□ -1.24
LIMCH1-218ENST00000513024 LINC00305Q7Z4B0 112 aa7.32□□□□□ -1.24
LIMCH1-218ENST00000513024 CENPVQ7Z7K6 275 aaPredicted RBP7.32□□□□□ -1.24
LIMCH1-218ENST00000513024 OCC1Q8TAD7 63 aa7.32□□□□□ -1.24
LIMCH1-218ENST00000513024 DUX5Q96PT3 197 aa7.32□□□□□ -1.24
LIMCH1-218ENST00000513024 MED12Q93074 2177 aa7.32□□□□□ -1.24
LIMCH1-218ENST00000513024 IGHV2OR16-5A0A0B4J2B6 119 aa7.32□□□□□ -1.24
LIMCH1-218ENST00000513024 TMEM229AB2RXF0 380 aa7.32□□□□□ -1.24
LIMCH1-218ENST00000513024 IGLC2P0DOY2 106 aa7.32□□□□□ -1.24
LIMCH1-218ENST00000513024 IGLC3P0DOY3 106 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms