RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 CLPSL2Q6UWE3 100 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 SEM1Q6ZVN7 128 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 C20orf196Q8IYI0 205 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 TM4SF18Q96CE8 201 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 ZNF778Q96MU6 729 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 GPR82Q96P67 336 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 VCX3BQ9H321 246 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 MAP6D1Q9H9H5 199 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 ACOT13Q9NPJ3 140 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 ZNF319Q9P2F9 582 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 HHLA3Q9XRX5 114 aa2.03□□□□□ -2.08
CCDC88A-205ENST00000426576 ARFGEF2Q9Y6D5 1785 aa2.03□□□□□ -2.09
CCDC88A-205ENST00000426576 IGLV3-9A0A075B6K5 115 aa2.03□□□□□ -2.09
CCDC88A-205ENST00000426576 A0A096LNI7 61 aa2.03□□□□□ -2.09
CCDC88A-205ENST00000426576 TCRBV3S1A0A5B6 114 aa2.03□□□□□ -2.09
CCDC88A-205ENST00000426576 FAM90A20PA6NIJ5 464 aa2.03□□□□□ -2.09
CCDC88A-205ENST00000426576 J3QLW9 94 aa2.03□□□□□ -2.09
CCDC88A-205ENST00000426576 PRYO14603 147 aa2.03□□□□□ -2.09
CCDC88A-205ENST00000426576 SCGB1D2O95969 90 aa2.03□□□□□ -2.09
CCDC88A-205ENST00000426576 IGLV1-47P01700 117 aa2.03□□□□□ -2.09
CCDC88A-205ENST00000426576 APOHP02749 345 aaPredicted RBP2.03□□□□□ -2.09
CCDC88A-205ENST00000426576 NGFRP08138 427 aa2.03□□□□□ -2.09
CCDC88A-205ENST00000426576 ZNF19P17023 458 aa2.03□□□□□ -2.09
CCDC88A-205ENST00000426576 DEFA1P59665 94 aa2.03□□□□□ -2.09
CCDC88A-205ENST00000426576 LIPEQ05469 1076 aa2.03□□□□□ -2.09
CCDC88A-205ENST00000426576 SLC10A2Q12908 348 aaPredicted RBP2.03□□□□□ -2.09
CCDC88A-205ENST00000426576 HNRNPA0Q13151 305 aaKnown RBP2.03□□□□□ -2.09
CCDC88A-205ENST00000426576 SPINK13Q1W4C9 94 aa2.03□□□□□ -2.09
CCDC88A-205ENST00000426576 LINC00173Q6ZV60 143 aa2.03□□□□□ -2.09
CCDC88A-205ENST00000426576 TEX26Q8N6G2 289 aa2.03□□□□□ -2.09
CCDC88A-205ENST00000426576 CD200R1Q8TD46 325 aa2.03□□□□□ -2.09
CCDC88A-205ENST00000426576 RAB24Q969Q5 203 aa2.03□□□□□ -2.09
CCDC88A-205ENST00000426576 Q96M85 177 aa2.03□□□□□ -2.09
CCDC88A-205ENST00000426576 KCTD14Q9BQ13 255 aaPredicted RBP2.03□□□□□ -2.09
CCDC88A-205ENST00000426576 BTBD10Q9BSF8 475 aa2.03□□□□□ -2.09
CCDC88A-205ENST00000426576 RSG1Q9BU20 258 aa2.03□□□□□ -2.09
CCDC88A-205ENST00000426576 SSBP4Q9BWG4 385 aaPredicted RBP2.03□□□□□ -2.09
CCDC88A-205ENST00000426576 OR2D2Q9H210 308 aa2.03□□□□□ -2.09
CCDC88A-205ENST00000426576 RBM12B-AS1Q9P1G2 102 aa2.03□□□□□ -2.09
CCDC88A-205ENST00000426576 PCTPQ9UKL6 214 aa2.03□□□□□ -2.09
CCDC88A-205ENST00000426576 LAMB1P07942 1786 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 IGKV1D-13A0A0B4J2D9 117 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 A0A1W2PQL4 384 aaPredicted RBP2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 NPIPB13A6NJU9 1138 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 TMEM212A6NML5 194 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 NPIPB5A8MRT5 1133 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 FAM25EA8MYX2 175 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 NPIPB4C9JG80 1138 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 PPP5D1E7EU14 171 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 FAAHO00519 579 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 APOL3O95236 402 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 IGHG2P01859 326 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 P0C879 139 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 IGKV1-13P0DP09 117 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 PDE6GP18545 87 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 XCL1P47992 114 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 AP3S2P59780 193 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 ZNF460Q14592 562 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 GAGE2EQ4V326 116 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 SPANXN1Q5VSR9 72 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 C11orf71Q6IPW1 123 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 HEPN1Q6WQI6 88 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 C10orf111Q8N326 155 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 ZNF491Q8N8L2 437 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 TERB2Q8NHR7 220 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 NPIPB3Q92617 1050 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 SIRPDQ9H106 197 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 WFDC10AQ9H1F0 79 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 PPIL3Q9H2H8 161 aaKnown RBP2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 C11orf68Q9H3H3 251 aaKnown RBP2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 ISG20L2Q9H9L3 353 aaKnown RBP2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 EFCAB1Q9HAE3 211 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 TAF9BQ9HBM6 251 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 FKBP14Q9NWM8 211 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 GAGE2DQ9UEU5 116 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 PRNDQ9UKY0 176 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 A0A087WWL8 130 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 FAM25AB3EWG3 89 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 FAM25CB3EWG5 89 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 FAM25GB3EWG6 89 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 PPP6CO00743 305 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 CA11O75493 328 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 CFDP00746 253 aaPredicted RBP2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 GCGP01275 180 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 CT62P0C5K7 136 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 KRTAP10-11P60412 298 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 UBE2G1P62253 170 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 FMODQ06828 376 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 BAK1Q16611 211 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 C6orf136Q5SQH8 315 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 PDPNQ86YL7 162 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 TWIST2Q8WVJ9 160 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 FUZQ9BT04 418 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 ARV1Q9H2C2 271 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 CST9LQ9H4G1 147 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 CCDC167Q9P0B6 97 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 AP4S1Q9Y587 144 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 TANC1Q9C0D5 1861 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 TDRD15B5MCY1 1934 aaKnown RBP2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 KBTBD11-OT1A0A1B0GTJ5 212 aa2.02□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 82.6 ms