RNA–Protein interactions for RNA: ENST00000237186.10

UBE3D-201, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 1,879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-201ENST00000237186 STXBP6Q8NFX7 210 aa12.93□□□□□ -0.34
UBE3D-201ENST00000237186 IGF2BP2-AS1Q96M15 143 aa12.93□□□□□ -0.34
UBE3D-201ENST00000237186 F11RQ9Y624 299 aaKnown RBP12.93□□□□□ -0.34
UBE3D-201ENST00000237186 AMBPP02760 352 aa12.93□□□□□ -0.34
UBE3D-201ENST00000237186 COX7A1P24310 79 aa12.93□□□□□ -0.34
UBE3D-201ENST00000237186 PLP1P60201 277 aa12.93□□□□□ -0.34
UBE3D-201ENST00000237186 ERVFC1-1P60608 527 aa12.93□□□□□ -0.34
UBE3D-201ENST00000237186 C22orf15Q8WYQ4 148 aa12.93□□□□□ -0.34
UBE3D-201ENST00000237186 TIMD4Q96H15 378 aa12.93□□□□□ -0.34
UBE3D-201ENST00000237186 CDC42EP3Q9UKI2 254 aa12.93□□□□□ -0.34
UBE3D-201ENST00000237186 M0R1W7 72 aa12.92□□□□□ -0.34
UBE3D-201ENST00000237186 ISLRO14498 428 aa12.92□□□□□ -0.34
UBE3D-201ENST00000237186 IGHV3-48P01763 117 aa12.92□□□□□ -0.34
UBE3D-201ENST00000237186 LGALS4P56470 323 aa12.92□□□□□ -0.34
UBE3D-201ENST00000237186 RUSC1-AS1Q66K80 236 aa12.92□□□□□ -0.34
UBE3D-201ENST00000237186 FXYD5Q96DB9 178 aa12.92□□□□□ -0.34
UBE3D-201ENST00000237186 SLC17A3O00476 420 aa12.91□□□□□ -0.34
UBE3D-201ENST00000237186 MYCNOSP40205 109 aa12.91□□□□□ -0.34
UBE3D-201ENST00000237186 PRB3Q04118 309 aaPredicted RBP12.91□□□□□ -0.34
UBE3D-201ENST00000237186 TPTE2P1Q5T6R2 138 aa12.91□□□□□ -0.34
UBE3D-201ENST00000237186 LINC00305Q7Z4B0 112 aa12.91□□□□□ -0.34
UBE3D-201ENST00000237186 MISP3Q96FF7 219 aa12.91□□□□□ -0.34
UBE3D-201ENST00000237186 PERPQ96FX8 193 aa12.91□□□□□ -0.34
UBE3D-201ENST00000237186 OR5I1Q13606 314 aa12.91□□□□□ -0.34
UBE3D-201ENST00000237186 JOSD1Q15040 202 aaPredicted RBP12.91□□□□□ -0.34
UBE3D-201ENST00000237186 RPEL1Q2QD12 228 aa12.91□□□□□ -0.34
UBE3D-201ENST00000237186 LDLRAD2Q5SZI1 272 aa12.91□□□□□ -0.34
UBE3D-201ENST00000237186 FBXL15Q9H469 300 aa12.91□□□□□ -0.34
UBE3D-201ENST00000237186 DPM3Q9P2X0 92 aa12.91□□□□□ -0.34
UBE3D-201ENST00000237186 ONECUT1Q9UBC0 465 aa12.91□□□□□ -0.34
UBE3D-201ENST00000237186 PYYP10082 97 aa12.9□□□□□ -0.34
UBE3D-201ENST00000237186 HTR1DP28221 377 aa12.9□□□□□ -0.34
UBE3D-201ENST00000237186 CDPF1Q6NVV7 123 aa12.9□□□□□ -0.34
UBE3D-201ENST00000237186 ZNF329Q86UD4 541 aa12.9□□□□□ -0.34
UBE3D-201ENST00000237186 DTX2Q86UW9 622 aa12.9□□□□□ -0.34
UBE3D-201ENST00000237186 SRSF12Q8WXF0 261 aaKnown RBP12.9□□□□□ -0.34
UBE3D-201ENST00000237186 PRDM13Q9H4Q3 707 aa12.9□□□□□ -0.34
UBE3D-201ENST00000237186 TRBV9A0A0B4J1U6 114 aa12.89□□□□□ -0.35
UBE3D-201ENST00000237186 TMEM8BA6NDV4 472 aa12.89□□□□□ -0.35
UBE3D-201ENST00000237186 C1orf122Q6ZSJ8 110 aa12.89□□□□□ -0.35
UBE3D-201ENST00000237186 OR5R1Q8NH85 324 aa12.89□□□□□ -0.35
UBE3D-201ENST00000237186 ODF3BA8MYP8 253 aa12.89□□□□□ -0.35
UBE3D-201ENST00000237186 FCN1O00602 326 aa12.89□□□□□ -0.35
UBE3D-201ENST00000237186 LY6HO94772 140 aa12.89□□□□□ -0.35
UBE3D-201ENST00000237186 MOSP00540 346 aa12.89□□□□□ -0.35
UBE3D-201ENST00000237186 PRTN3P24158 256 aa12.89□□□□□ -0.35
UBE3D-201ENST00000237186 NPBQ8NG41 125 aa12.89□□□□□ -0.35
UBE3D-201ENST00000237186 TMEM18Q96B42 140 aa12.89□□□□□ -0.35
UBE3D-201ENST00000237186 LOC105371242A0A075B767 164 aa12.88□□□□□ -0.35
UBE3D-201ENST00000237186 I3L2K1 104 aa12.88□□□□□ -0.35
UBE3D-201ENST00000237186 TIMM23O14925 209 aa12.88□□□□□ -0.35
UBE3D-201ENST00000237186 CEACAM3P40198 252 aa12.88□□□□□ -0.35
UBE3D-201ENST00000237186 ARF6P62330 175 aa12.88□□□□□ -0.35
UBE3D-201ENST00000237186 CX3CL1P78423 397 aa12.88□□□□□ -0.35
UBE3D-201ENST00000237186 C19orf35Q6ZS72 473 aa12.88□□□□□ -0.35
UBE3D-201ENST00000237186 CFHR4Q92496 578 aa12.88□□□□□ -0.35
UBE3D-201ENST00000237186 GNB1LQ9BYB4 327 aa12.88□□□□□ -0.35
UBE3D-201ENST00000237186 NBASA2RRP1 2371 aa12.88□□□□□ -0.35
UBE3D-201ENST00000237186 NAV3Q8IVL0 2385 aa12.88□□□□□ -0.35
UBE3D-201ENST00000237186 HYPMO75409 117 aa12.87□□□□□ -0.35
UBE3D-201ENST00000237186 ORM2P19652 201 aa12.87□□□□□ -0.35
UBE3D-201ENST00000237186 ADMP35318 185 aa12.87□□□□□ -0.35
UBE3D-201ENST00000237186 RPL19P84098 196 aaKnown RBP12.87□□□□□ -0.35
UBE3D-201ENST00000237186 COX19Q49B96 90 aa12.87□□□□□ -0.35
UBE3D-201ENST00000237186 FAM231DQ6ZW35 169 aa12.87□□□□□ -0.35
UBE3D-201ENST00000237186 GBGT1Q8N5D6 347 aa12.87□□□□□ -0.35
UBE3D-201ENST00000237186 OR1B1Q8NGR6 318 aa12.87□□□□□ -0.35
UBE3D-201ENST00000237186 SSBP3Q9BWW4 388 aaPredicted RBP12.87□□□□□ -0.35
UBE3D-201ENST00000237186 RNASE7Q9H1E1 156 aaKnown RBP12.87□□□□□ -0.35
UBE3D-201ENST00000237186 ITPR1Q14643 2758 aa12.87□□□□□ -0.35
UBE3D-201ENST00000237186 PEX7O00628 323 aa12.87□□□□□ -0.35
UBE3D-201ENST00000237186 NDUFA3O95167 84 aa12.87□□□□□ -0.35
UBE3D-201ENST00000237186 IGLC1P0CG04 106 aa12.87□□□□□ -0.35
UBE3D-201ENST00000237186 IBA57Q5T440 356 aaKnown RBP12.87□□□□□ -0.35
UBE3D-201ENST00000237186 KLF12Q9Y4X4 402 aa12.87□□□□□ -0.35
UBE3D-201ENST00000237186 ABCA4P78363 2273 aa12.86□□□□□ -0.35
UBE3D-201ENST00000237186 TPRP12270 2363 aaKnown RBP12.86□□□□□ -0.35
UBE3D-201ENST00000237186 SMIM27A0A1W2PRY6 76 aa12.86□□□□□ -0.35
UBE3D-201ENST00000237186 APELAP0DMC3 54 aa12.86□□□□□ -0.35
UBE3D-201ENST00000237186 OR8I2Q8N0Y5 310 aa12.86□□□□□ -0.35
UBE3D-201ENST00000237186 OR1L6Q8NGR2 347 aa12.86□□□□□ -0.35
UBE3D-201ENST00000237186 COL6A6A6NMZ7 2263 aa12.86□□□□□ -0.35
UBE3D-201ENST00000237186 NBR2O15453 112 aa12.85□□□□□ -0.35
UBE3D-201ENST00000237186 NBEAP1P0C6P0 100 aa12.85□□□□□ -0.35
UBE3D-201ENST00000237186 GZMBP10144 247 aa12.85□□□□□ -0.35
UBE3D-201ENST00000237186 CBLN1P23435 193 aa12.85□□□□□ -0.35
UBE3D-201ENST00000237186 MMDQ15546 238 aa12.85□□□□□ -0.35
UBE3D-201ENST00000237186 SMIM12Q96EX1 92 aa12.85□□□□□ -0.35
UBE3D-201ENST00000237186 LINC00479Q96M42 142 aa12.85□□□□□ -0.35
UBE3D-201ENST00000237186 WNT10AQ9GZT5 417 aa12.85□□□□□ -0.35
UBE3D-201ENST00000237186 MRPL18Q9H0U6 180 aaKnown RBP12.85□□□□□ -0.35
UBE3D-201ENST00000237186 EPDR1Q9UM22 224 aa12.85□□□□□ -0.35
UBE3D-201ENST00000237186 RELNP78509 3460 aa12.85□□□□□ -0.35
UBE3D-201ENST00000237186 PKD1L2Q7Z442 2459 aa12.85□□□□□ -0.35
UBE3D-201ENST00000237186 MT-ND6P03923 174 aa12.85□□□□□ -0.35
UBE3D-201ENST00000237186 GP9P14770 177 aa12.85□□□□□ -0.35
UBE3D-201ENST00000237186 GPR6P46095 362 aaPredicted RBP12.85□□□□□ -0.35
UBE3D-201ENST00000237186 PLGLAQ15195 96 aa12.85□□□□□ -0.35
UBE3D-201ENST00000237186 TMEM183BQ1AE95 376 aa12.85□□□□□ -0.35
UBE3D-201ENST00000237186 WDR73Q6P4I2 378 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms