RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 TNFSF18Q9UNG2 199 aa11.13□□□□□ -0.63
UPF1-211ENST00000600868 TSSC4Q9Y5U2 329 aaPredicted RBP11.13□□□□□ -0.63
UPF1-211ENST00000600868 IGHV3-21A0A0B4J1V1 117 aa11.12□□□□□ -0.63
UPF1-211ENST00000600868 FNDC10F2Z333 226 aa11.12□□□□□ -0.63
UPF1-211ENST00000600868 S100A11P31949 105 aa11.12□□□□□ -0.63
UPF1-211ENST00000600868 HBG1P69891 147 aa11.12□□□□□ -0.63
UPF1-211ENST00000600868 HBG2P69892 147 aa11.12□□□□□ -0.63
UPF1-211ENST00000600868 DLK1P80370 383 aa11.12□□□□□ -0.63
UPF1-211ENST00000600868 NHLH2Q02577 135 aa11.12□□□□□ -0.63
UPF1-211ENST00000600868 MLANAQ16655 118 aa11.12□□□□□ -0.63
UPF1-211ENST00000600868 ZNF343Q6P1L6 599 aa11.12□□□□□ -0.63
UPF1-211ENST00000600868 SLC16A13Q7RTY0 426 aa11.12□□□□□ -0.63
UPF1-211ENST00000600868 C11orf44Q8N8P7 122 aa11.12□□□□□ -0.63
UPF1-211ENST00000600868 INO80EQ8NBZ0 244 aaPredicted RBP11.12□□□□□ -0.63
UPF1-211ENST00000600868 ZNF502Q8TBZ5 544 aa11.12□□□□□ -0.63
UPF1-211ENST00000600868 TXN2Q99757 166 aa11.12□□□□□ -0.63
UPF1-211ENST00000600868 CITED2Q99967 270 aaPredicted RBP11.12□□□□□ -0.63
UPF1-211ENST00000600868 HSPB11Q9Y547 144 aa11.12□□□□□ -0.63
UPF1-211ENST00000600868 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.11□□□□□ -0.63
UPF1-211ENST00000600868 PFDN1O60925 122 aa11.11□□□□□ -0.63
UPF1-211ENST00000600868 IGHV3-48P01763 117 aa11.11□□□□□ -0.63
UPF1-211ENST00000600868 NPBWR1P48145 328 aa11.11□□□□□ -0.63
UPF1-211ENST00000600868 MFAP4P55083 255 aa11.11□□□□□ -0.63
UPF1-211ENST00000600868 SLC38A11Q08AI6 406 aa11.11□□□□□ -0.63
UPF1-211ENST00000600868 ATP6V1FQ16864 119 aa11.11□□□□□ -0.63
UPF1-211ENST00000600868 ACOT7LQ6ZUV0 252 aa11.11□□□□□ -0.63
UPF1-211ENST00000600868 TMEM217Q8N7C4 229 aa11.11□□□□□ -0.63
UPF1-211ENST00000600868 TMEM116Q8NCL8 245 aa11.11□□□□□ -0.63
UPF1-211ENST00000600868 OR4X1Q8NH49 305 aa11.11□□□□□ -0.63
UPF1-211ENST00000600868 C4orf3Q8WVX3 66 aa11.11□□□□□ -0.63
UPF1-211ENST00000600868 CCDC140Q96MF4 163 aa11.11□□□□□ -0.63
UPF1-211ENST00000600868 CITED1Q99966 193 aa11.11□□□□□ -0.63
UPF1-211ENST00000600868 ZNF747Q9BV97 191 aa11.11□□□□□ -0.63
UPF1-211ENST00000600868 GNB4Q9HAV0 340 aa11.11□□□□□ -0.63
UPF1-211ENST00000600868 ZC4H2Q9NQZ6 224 aa11.11□□□□□ -0.63
UPF1-211ENST00000600868 S4R3C0 116 aa11.11□□□□□ -0.63
UPF1-211ENST00000600868 RNF222A6NCQ9 220 aa11.1□□□□□ -0.63
UPF1-211ENST00000600868 F8W735 103 aaPredicted RBP11.1□□□□□ -0.63
UPF1-211ENST00000600868 ARPC5O15511 151 aa11.1□□□□□ -0.63
UPF1-211ENST00000600868 IGHV3-11P01762 117 aa11.1□□□□□ -0.63
UPF1-211ENST00000600868 LGALS1P09382 135 aaKnown RBP11.1□□□□□ -0.63
UPF1-211ENST00000600868 RUNX1Q01196 453 aa11.1□□□□□ -0.63
UPF1-211ENST00000600868 GAMTQ14353 236 aa11.1□□□□□ -0.63
UPF1-211ENST00000600868 KHDC1LQ5JSQ8 128 aa11.1□□□□□ -0.63
UPF1-211ENST00000600868 ACSM6Q6P461 480 aa11.1□□□□□ -0.63
UPF1-211ENST00000600868 C12orf54Q6X4T0 127 aa11.1□□□□□ -0.63
UPF1-211ENST00000600868 NDUFA11Q86Y39 141 aa11.1□□□□□ -0.63
UPF1-211ENST00000600868 OR1S2Q8NGQ3 325 aa11.1□□□□□ -0.63
UPF1-211ENST00000600868 BSCL2Q96G97 398 aaPredicted RBP11.1□□□□□ -0.63
UPF1-211ENST00000600868 SLC35E1Q96K37 410 aa11.1□□□□□ -0.63
UPF1-211ENST00000600868 HYLS1Q96M11 299 aa11.1□□□□□ -0.63
UPF1-211ENST00000600868 GAR1Q9NY12 217 aaKnown RBP11.1□□□□□ -0.63
UPF1-211ENST00000600868 MRPL36Q9P0J6 103 aaKnown RBP11.1□□□□□ -0.63
UPF1-211ENST00000600868 ADARB2-AS1A8MUL3 147 aa11.09□□□□□ -0.63
UPF1-211ENST00000600868 I3L521 148 aa11.09□□□□□ -0.63
UPF1-211ENST00000600868 CLN5O75503 358 aa11.09□□□□□ -0.63
UPF1-211ENST00000600868 IGHV3-23P01764 117 aa11.09□□□□□ -0.63
UPF1-211ENST00000600868 RND2P52198 227 aa11.09□□□□□ -0.63
UPF1-211ENST00000600868 OR2F1Q13607 317 aa11.09□□□□□ -0.63
UPF1-211ENST00000600868 ZNF345Q14585 488 aa11.09□□□□□ -0.63
UPF1-211ENST00000600868 VWC2Q2TAL6 325 aa11.09□□□□□ -0.63
UPF1-211ENST00000600868 ZFP69Q49AA0 526 aa11.09□□□□□ -0.63
UPF1-211ENST00000600868 Q56UQ5 140 aa11.09□□□□□ -0.63
UPF1-211ENST00000600868 CLEC19AQ6UXS0 136 aa11.09□□□□□ -0.63
UPF1-211ENST00000600868 LILRB2Q8N423 598 aa11.09□□□□□ -0.63
UPF1-211ENST00000600868 KLHL30-AS1Q8NEE0 82 aa11.09□□□□□ -0.63
UPF1-211ENST00000600868 OR5C1Q8NGR4 320 aa11.09□□□□□ -0.63
UPF1-211ENST00000600868 MFFQ9GZY8 342 aa11.09□□□□□ -0.63
UPF1-211ENST00000600868 PEF1Q9UBV8 284 aaKnown RBP11.09□□□□□ -0.63
UPF1-211ENST00000600868 TENM1Q9UKZ4 2725 aa11.08□□□□□ -0.64
UPF1-211ENST00000600868 CLEC3BP05452 202 aa11.08□□□□□ -0.64
UPF1-211ENST00000600868 GPR183P32249 361 aa11.08□□□□□ -0.64
UPF1-211ENST00000600868 HIST2H2BDQ6DRA6 164 aa11.08□□□□□ -0.64
UPF1-211ENST00000600868 SPSB3Q6PJ21 355 aa11.08□□□□□ -0.64
UPF1-211ENST00000600868 C18orf65Q6ZTR6 163 aa11.08□□□□□ -0.64
UPF1-211ENST00000600868 TMEM144Q7Z5S9 345 aa11.08□□□□□ -0.64
UPF1-211ENST00000600868 C3orf56Q8N813 242 aa11.08□□□□□ -0.64
UPF1-211ENST00000600868 NPIPB3Q92617 1050 aa11.08□□□□□ -0.64
UPF1-211ENST00000600868 ACY3Q96HD9 319 aa11.08□□□□□ -0.64
UPF1-211ENST00000600868 OR5B12Q96R08 314 aa11.08□□□□□ -0.64
UPF1-211ENST00000600868 TMEM147Q9BVK8 224 aa11.08□□□□□ -0.64
UPF1-211ENST00000600868 NPVFQ9HCQ7 196 aa11.08□□□□□ -0.64
UPF1-211ENST00000600868 UQCC1Q9NVA1 299 aa11.08□□□□□ -0.64
UPF1-211ENST00000600868 TRAV30A0A087WSZ9 112 aa11.07□□□□□ -0.64
UPF1-211ENST00000600868 OR2T8A6NH00 312 aa11.07□□□□□ -0.64
UPF1-211ENST00000600868 NUDT19A8MXV4 375 aa11.07□□□□□ -0.64
UPF1-211ENST00000600868 TGOLN2O43493 480 aa11.07□□□□□ -0.64
UPF1-211ENST00000600868 GNG7O60262 68 aa11.07□□□□□ -0.64
UPF1-211ENST00000600868 HSPB1P04792 205 aaKnown RBP11.07□□□□□ -0.64
UPF1-211ENST00000600868 CTSGP08311 255 aa11.07□□□□□ -0.64
UPF1-211ENST00000600868 AKR1C1Q04828 323 aa11.07□□□□□ -0.64
UPF1-211ENST00000600868 CLINT1Q14677 625 aa11.07□□□□□ -0.64
UPF1-211ENST00000600868 KRTAP21-3Q3LHN1 58 aa11.07□□□□□ -0.64
UPF1-211ENST00000600868 KCNRGQ8N5I3 272 aa11.07□□□□□ -0.64
UPF1-211ENST00000600868 THAP8Q8NA92 274 aa11.07□□□□□ -0.64
UPF1-211ENST00000600868 UBAC2Q8NBM4 344 aa11.07□□□□□ -0.64
UPF1-211ENST00000600868 ATP5SQ99766 215 aa11.07□□□□□ -0.64
UPF1-211ENST00000600868 COL6A5A8TX70 2615 aa11.06□□□□□ -0.64
UPF1-211ENST00000600868 A0A0D9SG52 128 aa11.06□□□□□ -0.64
UPF1-211ENST00000600868 A0A1W2PRX2 142 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms