RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 OR10G8Q8NGN5 311 aa8.14□□□□□ -1.11
VPS53-220ENST00000576149 OR1P1Q8NH06 330 aa8.14□□□□□ -1.11
VPS53-220ENST00000576149 SGMS2Q8NHU3 365 aa8.14□□□□□ -1.11
VPS53-220ENST00000576149 RNASEH2CQ8TDP1 164 aaKnown RBP8.14□□□□□ -1.11
VPS53-220ENST00000576149 TMEM37Q8WXS4 190 aa8.14□□□□□ -1.11
VPS53-220ENST00000576149 TMEM133Q9H2Q1 129 aa8.14□□□□□ -1.11
VPS53-220ENST00000576149 PSMB11A5LHX3 300 aa8.13□□□□□ -1.11
VPS53-220ENST00000576149 K7EN84 100 aa8.13□□□□□ -1.11
VPS53-220ENST00000576149 TNFRSF6BO95407 300 aa8.13□□□□□ -1.11
VPS53-220ENST00000576149 HNF1AP20823 631 aa8.13□□□□□ -1.11
VPS53-220ENST00000576149 PDLIM4P50479 330 aa8.13□□□□□ -1.11
VPS53-220ENST00000576149 TAS2R45P59539 299 aa8.13□□□□□ -1.11
VPS53-220ENST00000576149 RPL15P61313 204 aaKnown RBP8.13□□□□□ -1.11
VPS53-220ENST00000576149 VMA21Q3ZAQ7 101 aa8.13□□□□□ -1.11
VPS53-220ENST00000576149 RITA1Q96K30 269 aa8.13□□□□□ -1.11
VPS53-220ENST00000576149 PACRGQ96M98 296 aaPredicted RBP8.13□□□□□ -1.11
VPS53-220ENST00000576149 SLC25A33Q9BSK2 321 aa8.13□□□□□ -1.11
VPS53-220ENST00000576149 PCNX1Q96RV3 2341 aa8.13□□□□□ -1.11
VPS53-220ENST00000576149 DMXL2Q8TDJ6 3036 aa8.13□□□□□ -1.11
VPS53-220ENST00000576149 OR7C2O60412 319 aa8.13□□□□□ -1.11
VPS53-220ENST00000576149 C8orf88P0DMB2 117 aa8.13□□□□□ -1.11
VPS53-220ENST00000576149 LGALS7P47929 136 aa8.13□□□□□ -1.11
VPS53-220ENST00000576149 PPOXP50336 477 aa8.13□□□□□ -1.11
VPS53-220ENST00000576149 SUB1P53999 127 aaKnown RBP eCLIP8.13□□□□□ -1.11
VPS53-220ENST00000576149 MRGPRG-AS1Q2M3A8 158 aa8.13□□□□□ -1.11
VPS53-220ENST00000576149 CDPF1Q6NVV7 123 aa8.13□□□□□ -1.11
VPS53-220ENST00000576149 LINC01560Q8TB33 94 aa8.13□□□□□ -1.11
VPS53-220ENST00000576149 MRPL32Q9BYC8 188 aaKnown RBP8.13□□□□□ -1.11
VPS53-220ENST00000576149 FNDC4Q9H6D8 234 aaPredicted RBP8.13□□□□□ -1.11
VPS53-220ENST00000576149 RALYQ9UKM9 306 aaKnown RBP8.13□□□□□ -1.11
VPS53-220ENST00000576149 DCHS1Q96JQ0 3298 aa8.12□□□□□ -1.11
VPS53-220ENST00000576149 RAB4AP20338 218 aa8.12□□□□□ -1.11
VPS53-220ENST00000576149 FBXL19-AS1Q494R0 122 aa8.12□□□□□ -1.11
VPS53-220ENST00000576149 DNLZQ5SXM8 178 aa8.12□□□□□ -1.11
VPS53-220ENST00000576149 TPSG1Q9NRR2 321 aa8.12□□□□□ -1.11
VPS53-220ENST00000576149 PTPRZ1P23471 2315 aaPredicted RBP8.12□□□□□ -1.11
VPS53-220ENST00000576149 A0A1W2PPI3 338 aa8.12□□□□□ -1.11
VPS53-220ENST00000576149 LYNX1G3V0Z9 82 aa8.12□□□□□ -1.11
VPS53-220ENST00000576149 FSTL3O95633 263 aa8.12□□□□□ -1.11
VPS53-220ENST00000576149 IGLV1-47P01700 117 aa8.12□□□□□ -1.11
VPS53-220ENST00000576149 LYNX1P0DP58 116 aa8.12□□□□□ -1.11
VPS53-220ENST00000576149 CRYBB3P26998 211 aa8.12□□□□□ -1.11
VPS53-220ENST00000576149 CA7P43166 264 aa8.12□□□□□ -1.11
VPS53-220ENST00000576149 SSBP2P81877 361 aaPredicted RBP8.12□□□□□ -1.11
VPS53-220ENST00000576149 PET117Q6UWS5 81 aa8.12□□□□□ -1.11
VPS53-220ENST00000576149 ZNF841Q6ZN19 808 aa8.12□□□□□ -1.11
VPS53-220ENST00000576149 MUC15Q8N387 334 aa8.12□□□□□ -1.11
VPS53-220ENST00000576149 FAM167A-AS1Q96KT0 104 aa8.12□□□□□ -1.11
VPS53-220ENST00000576149 RNF2Q99496 336 aa8.12□□□□□ -1.11
VPS53-220ENST00000576149 DNAJC4Q9NNZ3 241 aa8.12□□□□□ -1.11
VPS53-220ENST00000576149 ARFGEF3Q5TH69 2177 aa8.12□□□□□ -1.11
VPS53-220ENST00000576149 PIEZO2Q9H5I5 2752 aa8.11□□□□□ -1.11
VPS53-220ENST00000576149 IGHV2-26A0A0B4J1V2 119 aa8.11□□□□□ -1.11
VPS53-220ENST00000576149 A0A1W2PRE2 83 aa8.11□□□□□ -1.11
VPS53-220ENST00000576149 HELTA6NFD8 242 aa8.11□□□□□ -1.11
VPS53-220ENST00000576149 HAX1O00165 279 aa8.11□□□□□ -1.11
VPS53-220ENST00000576149 ENSAO43768 121 aaKnown RBP8.11□□□□□ -1.11
VPS53-220ENST00000576149 AMBPP02760 352 aa8.11□□□□□ -1.11
VPS53-220ENST00000576149 HIST1H1BP16401 226 aaKnown RBP8.11□□□□□ -1.11
VPS53-220ENST00000576149 PRSS8Q16651 343 aa8.11□□□□□ -1.11
VPS53-220ENST00000576149 NPIPB3Q92617 1050 aa8.11□□□□□ -1.11
VPS53-220ENST00000576149 SLC25A2Q9BXI2 301 aa8.11□□□□□ -1.11
VPS53-220ENST00000576149 IL36BQ9NZH7 164 aa8.11□□□□□ -1.11
VPS53-220ENST00000576149 TRAPPC1Q9Y5R8 145 aa8.11□□□□□ -1.11
VPS53-220ENST00000576149 PKDREJQ9NTG1 2253 aa8.11□□□□□ -1.11
VPS53-220ENST00000576149 ADGRG4Q8IZF6 3080 aa8.11□□□□□ -1.11
VPS53-220ENST00000576149 IGKV1D-37A0A075B6S9 117 aa8.11□□□□□ -1.11
VPS53-220ENST00000576149 TRAV9-1A0A075B6T8 112 aa8.11□□□□□ -1.11
VPS53-220ENST00000576149 IGHV3-72A0A0B4J1Y9 119 aa8.11□□□□□ -1.11
VPS53-220ENST00000576149 FAM90A27PA6NNH2 459 aa8.11□□□□□ -1.11
VPS53-220ENST00000576149 GGTLC3B5MD39 225 aa8.11□□□□□ -1.11
VPS53-220ENST00000576149 SIAH2O43255 324 aa8.11□□□□□ -1.11
VPS53-220ENST00000576149 TGFAP01135 160 aa8.11□□□□□ -1.11
VPS53-220ENST00000576149 OR10J4P0C629 311 aa8.11□□□□□ -1.11
VPS53-220ENST00000576149 RAB4BP61018 213 aa8.11□□□□□ -1.11
VPS53-220ENST00000576149 MORN5Q5VZ52 161 aa8.11□□□□□ -1.11
VPS53-220ENST00000576149 TEX45Q8NA69 505 aa8.11□□□□□ -1.11
VPS53-220ENST00000576149 THAP8Q8NA92 274 aa8.11□□□□□ -1.11
VPS53-220ENST00000576149 PFDN5Q99471 154 aa8.11□□□□□ -1.11
VPS53-220ENST00000576149 SPTBN2O15020 2390 aa8.11□□□□□ -1.11
VPS53-220ENST00000576149 TRAV5A0A0B4J249 113 aa8.1□□□□□ -1.11
VPS53-220ENST00000576149 TCRBV4S1A1TA0A5B7 111 aa8.1□□□□□ -1.11
VPS53-220ENST00000576149 CRYGBP07316 175 aa8.1□□□□□ -1.11
VPS53-220ENST00000576149 GRNP28799 593 aaKnown RBP8.1□□□□□ -1.11
VPS53-220ENST00000576149 GNG4P50150 75 aa8.1□□□□□ -1.11
VPS53-220ENST00000576149 CNN1P51911 297 aaKnown RBP8.1□□□□□ -1.11
VPS53-220ENST00000576149 YPEL3P61236 119 aaPredicted RBP8.1□□□□□ -1.11
VPS53-220ENST00000576149 SUMO1P63165 101 aaKnown RBP8.1□□□□□ -1.11
VPS53-220ENST00000576149 CENPWQ5EE01 88 aa8.1□□□□□ -1.11
VPS53-220ENST00000576149 PVRIGQ6DKI7 326 aa8.1□□□□□ -1.11
VPS53-220ENST00000576149 OR1L4Q8NGR5 311 aa8.1□□□□□ -1.11
VPS53-220ENST00000576149 IGLC7A0M8Q6 106 aa8.1□□□□□ -1.11
VPS53-220ENST00000576149 SLC17A3O00476 420 aa8.1□□□□□ -1.11
VPS53-220ENST00000576149 REG1AP05451 166 aa8.1□□□□□ -1.11
VPS53-220ENST00000576149 DLX1P56177 255 aa8.1□□□□□ -1.11
VPS53-220ENST00000576149 SELENOTP62341 195 aa8.1□□□□□ -1.11
VPS53-220ENST00000576149 ZNF90Q03938 601 aa8.1□□□□□ -1.11
VPS53-220ENST00000576149 SSX2Q16385 188 aa8.1□□□□□ -1.11
VPS53-220ENST00000576149 ZNF672Q499Z4 452 aaPredicted RBP8.1□□□□□ -1.11
VPS53-220ENST00000576149 MMD2Q8IY49 270 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms