RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 LAIR2Q6ISS4 152 aa3.85□□□□□ -1.79
VPS53-219ENST00000576019 NTM-AS1Q6ZSK4 140 aa3.85□□□□□ -1.79
VPS53-219ENST00000576019 SLC35F6Q8N357 371 aa3.85□□□□□ -1.79
VPS53-219ENST00000576019 EXOSC8Q96B26 276 aaKnown RBP3.85□□□□□ -1.79
VPS53-219ENST00000576019 STARD4Q96DR4 205 aa3.85□□□□□ -1.79
VPS53-219ENST00000576019 DCUN1D1Q96GG9 259 aa3.85□□□□□ -1.79
VPS53-219ENST00000576019 ACY3Q96HD9 319 aa3.85□□□□□ -1.79
VPS53-219ENST00000576019 PPP1R2P1Q96PQ5 205 aa3.85□□□□□ -1.79
VPS53-219ENST00000576019 OR7D2Q96RA2 312 aa3.85□□□□□ -1.79
VPS53-219ENST00000576019 OR51I2Q9H344 312 aa3.85□□□□□ -1.79
VPS53-219ENST00000576019 HES4Q9HCC6 221 aa3.85□□□□□ -1.79
VPS53-219ENST00000576019 SLC7A10Q9NS82 523 aa3.85□□□□□ -1.79
VPS53-219ENST00000576019 FAM32AQ9Y421 112 aaKnown RBP3.85□□□□□ -1.79
VPS53-219ENST00000576019 GMNCA6NCL1 334 aa3.84□□□□□ -1.79
VPS53-219ENST00000576019 K7EPK0 472 aa3.84□□□□□ -1.79
VPS53-219ENST00000576019 INAFM2P0DMQ5 153 aa3.84□□□□□ -1.79
VPS53-219ENST00000576019 CD79AP11912 226 aa3.84□□□□□ -1.79
VPS53-219ENST00000576019 GTF2F2P13984 249 aa3.84□□□□□ -1.79
VPS53-219ENST00000576019 CTLA4P16410 223 aa3.84□□□□□ -1.79
VPS53-219ENST00000576019 DDTP30046 118 aa3.84□□□□□ -1.79
VPS53-219ENST00000576019 OR1E2P47887 323 aa3.84□□□□□ -1.79
VPS53-219ENST00000576019 VEGFCP49767 419 aa3.84□□□□□ -1.79
VPS53-219ENST00000576019 ZNF83P51522 516 aa3.84□□□□□ -1.79
VPS53-219ENST00000576019 CRYBA4P53673 196 aa3.84□□□□□ -1.79
VPS53-219ENST00000576019 GABARAPL2P60520 117 aa3.84□□□□□ -1.79
VPS53-219ENST00000576019 S100A12P80511 92 aa3.84□□□□□ -1.79
VPS53-219ENST00000576019 FABP5Q01469 135 aa3.84□□□□□ -1.79
VPS53-219ENST00000576019 CDK10Q15131 360 aa3.84□□□□□ -1.79
VPS53-219ENST00000576019 LUZP6Q538Z0 58 aa3.84□□□□□ -1.79
VPS53-219ENST00000576019 C1orf194Q5T5A4 169 aa3.84□□□□□ -1.79
VPS53-219ENST00000576019 MRPL2Q5T653 305 aaKnown RBP3.84□□□□□ -1.79
VPS53-219ENST00000576019 DPPA2Q7Z7J5 298 aa3.84□□□□□ -1.79
VPS53-219ENST00000576019 ZNF567Q8N184 647 aa3.84□□□□□ -1.79
VPS53-219ENST00000576019 ZNF676Q8N7Q3 588 aa3.84□□□□□ -1.79
VPS53-219ENST00000576019 CIRBP-AS1Q8TBR5 109 aa3.84□□□□□ -1.79
VPS53-219ENST00000576019 RASSF5Q8WWW0 418 aa3.84□□□□□ -1.79
VPS53-219ENST00000576019 REEP6Q96HR9 211 aa3.84□□□□□ -1.79
VPS53-219ENST00000576019 BTF3L4Q96K17 158 aa3.84□□□□□ -1.79
VPS53-219ENST00000576019 ZNF285Q96NJ3 590 aa3.84□□□□□ -1.79
VPS53-219ENST00000576019 KIFC1Q9BW19 673 aa3.84□□□□□ -1.79
VPS53-219ENST00000576019 NMNAT1Q9HAN9 279 aaPredicted RBP3.84□□□□□ -1.79
VPS53-219ENST00000576019 DOK5Q9P104 306 aa3.84□□□□□ -1.79
VPS53-219ENST00000576019 NEU3Q9UQ49 428 aa3.84□□□□□ -1.79
VPS53-219ENST00000576019 DNAH5Q8TE73 4624 aa3.83□□□□□ -1.8
VPS53-219ENST00000576019 SNRNP200O75643 2136 aaKnown RBP3.83□□□□□ -1.8
VPS53-219ENST00000576019 GNG14A0A1W2PPG7 69 aa3.83□□□□□ -1.8
VPS53-219ENST00000576019 B4DEV8 164 aa3.83□□□□□ -1.8
VPS53-219ENST00000576019 MRASO14807 208 aa3.83□□□□□ -1.8
VPS53-219ENST00000576019 SRSF10O75494 262 aaKnown RBP3.83□□□□□ -1.8
VPS53-219ENST00000576019 SCO1O75880 301 aa3.83□□□□□ -1.8
VPS53-219ENST00000576019 OR12D1P0DN82 309 aa3.83□□□□□ -1.8
VPS53-219ENST00000576019 CD28P10747 220 aa3.83□□□□□ -1.8
VPS53-219ENST00000576019 ZNF823P16415 610 aa3.83□□□□□ -1.8
VPS53-219ENST00000576019 MARCKSL1P49006 195 aa3.83□□□□□ -1.8
VPS53-219ENST00000576019 MNAT1P51948 309 aa3.83□□□□□ -1.8
VPS53-219ENST00000576019 HERVK_113P63121 156 aa3.83□□□□□ -1.8
VPS53-219ENST00000576019 HNRNPA0Q13151 305 aaKnown RBP3.83□□□□□ -1.8
VPS53-219ENST00000576019 EBPQ15125 230 aaKnown RBP3.83□□□□□ -1.8
VPS53-219ENST00000576019 MPPED2Q15777 294 aa3.83□□□□□ -1.8
VPS53-219ENST00000576019 BATFQ16520 125 aa3.83□□□□□ -1.8
VPS53-219ENST00000576019 FAM78BQ5VT40 261 aa3.83□□□□□ -1.8
VPS53-219ENST00000576019 EBLN2Q6P2I7 272 aa3.83□□□□□ -1.8
VPS53-219ENST00000576019 UBL4BQ8N7F7 174 aa3.83□□□□□ -1.8
VPS53-219ENST00000576019 OR4S1Q8NGB4 309 aa3.83□□□□□ -1.8
VPS53-219ENST00000576019 OR2D3Q8NGH3 330 aa3.83□□□□□ -1.8
VPS53-219ENST00000576019 ZNF799Q96GE5 643 aa3.83□□□□□ -1.8
VPS53-219ENST00000576019 FAM210BQ96KR6 192 aa3.83□□□□□ -1.8
VPS53-219ENST00000576019 LINC00477Q96M19 166 aa3.83□□□□□ -1.8
VPS53-219ENST00000576019 CMSS1Q9BQ75 279 aaKnown RBP3.83□□□□□ -1.8
VPS53-219ENST00000576019 MS4A8Q9BY19 250 aa3.83□□□□□ -1.8
VPS53-219ENST00000576019 EIF5A2Q9GZV4 153 aaKnown RBP3.83□□□□□ -1.8
VPS53-219ENST00000576019 IFI27L2Q9H2X8 130 aa3.83□□□□□ -1.8
VPS53-219ENST00000576019 ENY2Q9NPA8 101 aa3.83□□□□□ -1.8
VPS53-219ENST00000576019 HHLA2Q9UM44 414 aa3.83□□□□□ -1.8
VPS53-219ENST00000576019 ARFGEF3Q5TH69 2177 aa3.82□□□□□ -1.8
VPS53-219ENST00000576019 TMEM223A0PJW6 202 aa3.82□□□□□ -1.8
VPS53-219ENST00000576019 OR4C46A6NHA9 309 aa3.82□□□□□ -1.8
VPS53-219ENST00000576019 C4orf51C9J302 202 aa3.82□□□□□ -1.8
VPS53-219ENST00000576019 F5H5P2 479 aa3.82□□□□□ -1.8
VPS53-219ENST00000576019 CGAP01215 116 aa3.82□□□□□ -1.8
VPS53-219ENST00000576019 IFNA14P01570 189 aa3.82□□□□□ -1.8
VPS53-219ENST00000576019 IGLV1-47P01700 117 aa3.82□□□□□ -1.8
VPS53-219ENST00000576019 HLA-DQB1P01920 261 aa3.82□□□□□ -1.8
VPS53-219ENST00000576019 CRHP06850 196 aa3.82□□□□□ -1.8
VPS53-219ENST00000576019 OR5G3P0C626 314 aa3.82□□□□□ -1.8
VPS53-219ENST00000576019 HSPA9P38646 679 aaKnown RBP3.82□□□□□ -1.8
VPS53-219ENST00000576019 ELF3P78545 371 aaPredicted RBP3.82□□□□□ -1.8
VPS53-219ENST00000576019 RUNX1Q01196 453 aa3.82□□□□□ -1.8
VPS53-219ENST00000576019 BSPH1Q075Z2 132 aa3.82□□□□□ -1.8
VPS53-219ENST00000576019 POU6F1Q14863 301 aa3.82□□□□□ -1.8
VPS53-219ENST00000576019 FAM201AQ5SY85 155 aa3.82□□□□□ -1.8
VPS53-219ENST00000576019 FAM71E1Q6IPT2 247 aa3.82□□□□□ -1.8
VPS53-219ENST00000576019 SLC36A1Q7Z2H8 476 aa3.82□□□□□ -1.8
VPS53-219ENST00000576019 GTSCR1Q86UQ5 136 aa3.82□□□□□ -1.8
VPS53-219ENST00000576019 WFDC9Q8NEX5 89 aa3.82□□□□□ -1.8
VPS53-219ENST00000576019 OR4X1Q8NH49 305 aa3.82□□□□□ -1.8
VPS53-219ENST00000576019 JOSD2Q8TAC2 188 aa3.82□□□□□ -1.8
VPS53-219ENST00000576019 LCN9Q8WX39 176 aa3.82□□□□□ -1.8
VPS53-219ENST00000576019 SLC25A44Q96H78 314 aaPredicted RBP3.82□□□□□ -1.8
VPS53-219ENST00000576019 THTPAQ9BU02 230 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 114.8 ms