RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 KLK11Q9UBX7 282 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 PRNDQ9UKY0 176 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 HIGD1AQ9Y241 93 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 VSIG4Q9Y279 399 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 TP53TG1Q9Y2A0 90 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 LINC00312Q9Y6C7 94 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 LY96Q9Y6Y9 160 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 DLEC1Q9Y238 1755 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 CITO14578 2027 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 HCFC1P51610 2035 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 FRMPD3Q5JV73 1810 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 SBF2Q86WG5 1849 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 NSG1A0A0A6YYJ2 146 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 TRAV8-6A0A0B4J262 113 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 A0A0U1RQV1 116 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 TEX48A0A1B0GUV7 120 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 LOC102725191A0A1B0GVB3 256 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 FAM231BA6NCW3 169 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 OR2T8A6NH00 312 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 ZNF727A8MUV8 499 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 PRSS46E5RG02 174 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 H0YIG0 161 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 J3QRE1 110 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 OVOL1O14753 267 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 P04436 131 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 KLK2P20151 261 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 BLVRBP30043 206 aaPredicted RBP2.66□□□□□ -1.98
VPS35-203ENST00000562420 NSG1P42857 185 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 RGRP47804 291 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 FABP6P51161 128 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 SSR4P51571 173 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 CRYBA2P53672 197 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 FOXA1P55317 472 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 ZNF121P58317 390 aaPredicted RBP2.66□□□□□ -1.98
VPS35-203ENST00000562420 RPS4XP62701 263 aaKnown RBP2.66□□□□□ -1.98
VPS35-203ENST00000562420 PSG4Q00888 419 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 ZNF85Q03923 595 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 CD164Q04900 197 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 ZNF146Q15072 292 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 CDK5R1Q15078 307 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 MPV17L2Q567V2 206 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 MEIG1Q5JSS6 88 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 KLF17Q5JT82 389 aaPredicted RBP2.66□□□□□ -1.98
VPS35-203ENST00000562420 SPANXN4Q5MJ08 99 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 LCE3CQ5T5A8 94 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 SPATA31B1PQ5VZV4 182 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 RPL7L1Q6DKI1 246 aaKnown RBP2.66□□□□□ -1.98
VPS35-203ENST00000562420 LCN15Q6UWW0 184 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 TMEM64Q6YI46 380 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 ZNF841Q6ZN19 808 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 SHISA6Q6ZSJ9 500 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 Q6ZUT4 128 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 SPATA12Q7Z6I5 190 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 OOSP2Q86WS3 158 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 MSRB3Q8IXL7 192 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 ABHD12Q8N2K0 398 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 NFAM1Q8NET5 270 aaPredicted RBP2.66□□□□□ -1.98
VPS35-203ENST00000562420 NUP35Q8NFH5 326 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 CLDND2Q8NHS1 167 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 PIFOQ8TCI5 191 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 SLC37A2Q8TED4 501 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 ARPC1AQ92747 370 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 LSM10Q969L4 123 aaKnown RBP2.66□□□□□ -1.98
VPS35-203ENST00000562420 TMEM101Q96IK0 257 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 PDCD1LG2Q9BQ51 273 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 TM2D1Q9BX74 207 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 PPDPFQ9H3Y8 114 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 GNB4Q9HAV0 340 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 NRN1Q9NPD7 142 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 ZNF443Q9Y2A4 671 aaPredicted RBP2.66□□□□□ -1.98
VPS35-203ENST00000562420 POLR1DQ9Y2S0 133 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 TMED7Q9Y3B3 224 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 RFNGQ9Y644 331 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 SPCS1Q9Y6A9 102 aa2.66□□□□□ -1.98
VPS35-203ENST00000562420 NRXN2Q9P2S2 1712 aa2.65□□□□□ -1.98
VPS35-203ENST00000562420 UBR3Q6ZT12 1888 aa2.65□□□□□ -1.98
VPS35-203ENST00000562420 TRGV10A0A0A0MS01 117 aa2.65□□□□□ -1.99
VPS35-203ENST00000562420 A0A1B0GUS0 222 aa2.65□□□□□ -1.99
VPS35-203ENST00000562420 TINCRA0A1B0GVN0 87 aa2.65□□□□□ -1.99
VPS35-203ENST00000562420 K7ENP7 123 aa2.65□□□□□ -1.99
VPS35-203ENST00000562420 ISLRO14498 428 aa2.65□□□□□ -1.99
VPS35-203ENST00000562420 UQCRQO14949 82 aa2.65□□□□□ -1.99
VPS35-203ENST00000562420 NPFFO15130 113 aa2.65□□□□□ -1.99
VPS35-203ENST00000562420 ZNF737O75373 536 aa2.65□□□□□ -1.99
VPS35-203ENST00000562420 ZNF324O75467 553 aaPredicted RBP2.65□□□□□ -1.99
VPS35-203ENST00000562420 ATP5LO75964 103 aa2.65□□□□□ -1.99
VPS35-203ENST00000562420 CXorf1O96002 111 aa2.65□□□□□ -1.99
VPS35-203ENST00000562420 NAPSAO96009 420 aa2.65□□□□□ -1.99
VPS35-203ENST00000562420 SMIM13P0DJ93 91 aa2.65□□□□□ -1.99
VPS35-203ENST00000562420 GABRG2P18507 467 aa2.65□□□□□ -1.99
VPS35-203ENST00000562420 FCGR2CP31995 323 aa2.65□□□□□ -1.99
VPS35-203ENST00000562420 NOVP48745 357 aa2.65□□□□□ -1.99
VPS35-203ENST00000562420 SGSHP51688 502 aa2.65□□□□□ -1.99
VPS35-203ENST00000562420 DLX1P56177 255 aa2.65□□□□□ -1.99
VPS35-203ENST00000562420 RPS14P62263 151 aaKnown RBP2.65□□□□□ -1.99
VPS35-203ENST00000562420 ZNF117Q03924 483 aa2.65□□□□□ -1.99
VPS35-203ENST00000562420 CATR1Q13166 79 aa2.65□□□□□ -1.99
VPS35-203ENST00000562420 OR1C1Q15619 314 aa2.65□□□□□ -1.99
VPS35-203ENST00000562420 HIGD2BQ4VC39 106 aa2.65□□□□□ -1.99
VPS35-203ENST00000562420 DCAF12Q5T6F0 453 aa2.65□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms