RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 INS-IGF2F8WCM5 200 aa7.53□□□□□ -1.2
LDLR-214ENST00000560628 DNASE2O00115 360 aaPredicted RBP7.53□□□□□ -1.2
LDLR-214ENST00000560628 OPRK1P41145 380 aa7.53□□□□□ -1.2
LDLR-214ENST00000560628 PAFAH1B2P68402 229 aa7.53□□□□□ -1.2
LDLR-214ENST00000560628 TNFRSF9Q07011 255 aa7.53□□□□□ -1.2
LDLR-214ENST00000560628 PVRIGQ6DKI7 326 aa7.53□□□□□ -1.2
LDLR-214ENST00000560628 CLVS1Q8IUQ0 354 aaPredicted RBP7.53□□□□□ -1.2
LDLR-214ENST00000560628 SELENOHQ8IZQ5 122 aaKnown RBP7.53□□□□□ -1.2
LDLR-214ENST00000560628 LHFPL5Q8TAF8 219 aa7.53□□□□□ -1.2
LDLR-214ENST00000560628 GLYATL2Q8WU03 294 aa7.53□□□□□ -1.2
LDLR-214ENST00000560628 GPR146Q96CH1 333 aa7.53□□□□□ -1.2
LDLR-214ENST00000560628 DIRAS2Q96HU8 199 aa7.53□□□□□ -1.2
LDLR-214ENST00000560628 TMEM222Q9H0R3 208 aa7.53□□□□□ -1.2
LDLR-214ENST00000560628 MS4A6AQ9H2W1 248 aa7.53□□□□□ -1.2
LDLR-214ENST00000560628 VSIRQ9H7M9 311 aa7.53□□□□□ -1.2
LDLR-214ENST00000560628 ZFAND3Q9H8U3 227 aa7.53□□□□□ -1.2
LDLR-214ENST00000560628 CTNNBIP1Q9NSA3 81 aaPredicted RBP7.53□□□□□ -1.2
LDLR-214ENST00000560628 MPTX1A8MV57 137 aa7.52□□□□□ -1.21
LDLR-214ENST00000560628 DISC1C4P0D8 188 aa7.52□□□□□ -1.21
LDLR-214ENST00000560628 CORTO00230 105 aa7.52□□□□□ -1.21
LDLR-214ENST00000560628 CLN5O75503 358 aa7.52□□□□□ -1.21
LDLR-214ENST00000560628 CDS2O95674 445 aa7.52□□□□□ -1.21
LDLR-214ENST00000560628 NPPCP23582 126 aa7.52□□□□□ -1.21
LDLR-214ENST00000560628 DEFB131AP59861 70 aa7.52□□□□□ -1.21
LDLR-214ENST00000560628 SPCS3P61009 180 aa7.52□□□□□ -1.21
LDLR-214ENST00000560628 MRPS10P82664 201 aaKnown RBP7.52□□□□□ -1.21
LDLR-214ENST00000560628 IL18Q14116 193 aa7.52□□□□□ -1.21
LDLR-214ENST00000560628 MEF2DQ14814 521 aa7.52□□□□□ -1.21
LDLR-214ENST00000560628 TIGITQ495A1 244 aa7.52□□□□□ -1.21
LDLR-214ENST00000560628 LEMD1Q68G75 181 aa7.52□□□□□ -1.21
LDLR-214ENST00000560628 CEMP1Q6PRD7 247 aaPredicted RBP7.52□□□□□ -1.21
LDLR-214ENST00000560628 FAM24BQ8N5W8 94 aa7.52□□□□□ -1.21
LDLR-214ENST00000560628 OR4C16Q8NGL9 310 aa7.52□□□□□ -1.21
LDLR-214ENST00000560628 TMEM230Q96A57 120 aa7.52□□□□□ -1.21
LDLR-214ENST00000560628 NAA60Q9H7X0 242 aa7.52□□□□□ -1.21
LDLR-214ENST00000560628 HEYLQ9NQ87 328 aaPredicted RBP7.52□□□□□ -1.21
LDLR-214ENST00000560628 PRR13Q9NZ81 148 aa7.52□□□□□ -1.21
LDLR-214ENST00000560628 CACNG5Q9UF02 275 aa7.52□□□□□ -1.21
LDLR-214ENST00000560628 RABAC1Q9UI14 185 aa7.52□□□□□ -1.21
LDLR-214ENST00000560628 CEBPZOSA8MTT3 80 aa7.51□□□□□ -1.21
LDLR-214ENST00000560628 B3GALNT1O75752 331 aa7.51□□□□□ -1.21
LDLR-214ENST00000560628 NXPH3O95157 252 aa7.51□□□□□ -1.21
LDLR-214ENST00000560628 LY6G6CO95867 125 aa7.51□□□□□ -1.21
LDLR-214ENST00000560628 CD5P06127 495 aa7.51□□□□□ -1.21
LDLR-214ENST00000560628 AKAIN1P0CW23 69 aa7.51□□□□□ -1.21
LDLR-214ENST00000560628 RPL5P46777 297 aaKnown RBP7.51□□□□□ -1.21
LDLR-214ENST00000560628 DHODHQ02127 395 aa7.51□□□□□ -1.21
LDLR-214ENST00000560628 SSBP1Q04837 148 aaKnown RBP7.51□□□□□ -1.21
LDLR-214ENST00000560628 TMEM268Q5VZI3 342 aa7.51□□□□□ -1.21
LDLR-214ENST00000560628 FAM219AQ8IW50 185 aa7.51□□□□□ -1.21
LDLR-214ENST00000560628 OR51S1Q8NGJ8 323 aa7.51□□□□□ -1.21
LDLR-214ENST00000560628 OR4X1Q8NH49 305 aa7.51□□□□□ -1.21
LDLR-214ENST00000560628 SMIM4Q8WVI0 70 aa7.51□□□□□ -1.21
LDLR-214ENST00000560628 RBPMSQ93062 196 aaKnown RBP7.51□□□□□ -1.21
LDLR-214ENST00000560628 RARRES2Q99969 163 aa7.51□□□□□ -1.21
LDLR-214ENST00000560628 GPR132Q9UNW8 380 aa7.51□□□□□ -1.21
LDLR-214ENST00000560628 LYSTQ99698 3801 aa7.51□□□□□ -1.21
LDLR-214ENST00000560628 NUPR2A6NF83 97 aa7.5□□□□□ -1.21
LDLR-214ENST00000560628 CRYM-AS1A6NIL9 109 aa7.5□□□□□ -1.21
LDLR-214ENST00000560628 CTDSPLO15194 276 aa7.5□□□□□ -1.21
LDLR-214ENST00000560628 IGKV1-17P01599 117 aa7.5□□□□□ -1.21
LDLR-214ENST00000560628 HTR2BP41595 481 aa7.5□□□□□ -1.21
LDLR-214ENST00000560628 RBMS2Q15434 407 aaKnown RBP7.5□□□□□ -1.21
LDLR-214ENST00000560628 BSXQ3C1V8 233 aa7.5□□□□□ -1.21
LDLR-214ENST00000560628 TMEM217Q8N7C4 229 aa7.5□□□□□ -1.21
LDLR-214ENST00000560628 STXBP6Q8NFX7 210 aa7.5□□□□□ -1.21
LDLR-214ENST00000560628 OR11H2Q8NH07 326 aa7.5□□□□□ -1.21
LDLR-214ENST00000560628 OR52E5Q8NH55 327 aa7.5□□□□□ -1.21
LDLR-214ENST00000560628 DYNC2LI1Q8TCX1 351 aa7.5□□□□□ -1.21
LDLR-214ENST00000560628 LINC00476Q8WZB0 136 aa7.5□□□□□ -1.21
LDLR-214ENST00000560628 METTL26Q96S19 204 aa7.5□□□□□ -1.21
LDLR-214ENST00000560628 TMEM231Q9H6L2 316 aa7.5□□□□□ -1.21
LDLR-214ENST00000560628 DNAH1Q9P2D7 4330 aa7.5□□□□□ -1.21
LDLR-214ENST00000560628 RPS10-NUDT3A0A1W2PQS6 291 aa7.49□□□□□ -1.21
LDLR-214ENST00000560628 A0A1W2PS18 150 aa7.49□□□□□ -1.21
LDLR-214ENST00000560628 ANKRD20A5PA0PJZ0 165 aa7.49□□□□□ -1.21
LDLR-214ENST00000560628 DEFB4AO15263 64 aa7.49□□□□□ -1.21
LDLR-214ENST00000560628 CA1P00915 261 aaPredicted RBP7.49□□□□□ -1.21
LDLR-214ENST00000560628 CRYBB3P26998 211 aa7.49□□□□□ -1.21
LDLR-214ENST00000560628 P2RY1P47900 373 aa7.49□□□□□ -1.21
LDLR-214ENST00000560628 RND2P52198 227 aa7.49□□□□□ -1.21
LDLR-214ENST00000560628 TMBIM6P55061 237 aa7.49□□□□□ -1.21
LDLR-214ENST00000560628 SURF2Q15527 256 aaPredicted RBP7.49□□□□□ -1.21
LDLR-214ENST00000560628 AARDQ4LEZ3 155 aa7.49□□□□□ -1.21
LDLR-214ENST00000560628 PRSS54Q6PEW0 395 aa7.49□□□□□ -1.21
LDLR-214ENST00000560628 RAB2BQ8WUD1 216 aa7.49□□□□□ -1.21
LDLR-214ENST00000560628 GATAD1Q8WUU5 269 aa7.49□□□□□ -1.21
LDLR-214ENST00000560628 PRRT1Q99946 306 aa7.49□□□□□ -1.21
LDLR-214ENST00000560628 MCUBQ9NWR8 336 aa7.49□□□□□ -1.21
LDLR-214ENST00000560628 CCDC59Q9P031 241 aaKnown RBP7.49□□□□□ -1.21
LDLR-214ENST00000560628 KCNIP3Q9Y2W7 256 aa7.49□□□□□ -1.21
LDLR-214ENST00000560628 KLK5Q9Y337 293 aaPredicted RBP7.49□□□□□ -1.21
LDLR-214ENST00000560628 TMEM56-RWDD3S4R434 201 aa7.49□□□□□ -1.21
LDLR-214ENST00000560628 TRAV30A0A087WSZ9 112 aa7.48□□□□□ -1.21
LDLR-214ENST00000560628 TRAV2A0A0B4J234 112 aa7.48□□□□□ -1.21
LDLR-214ENST00000560628 FABP12A6NFH5 140 aa7.48□□□□□ -1.21
LDLR-214ENST00000560628 KNCNA6PVL3 124 aa7.48□□□□□ -1.21
LDLR-214ENST00000560628 K7EQG2 157 aa7.48□□□□□ -1.21
LDLR-214ENST00000560628 GSTZ1O43708 216 aaPredicted RBP7.48□□□□□ -1.21
LDLR-214ENST00000560628 SCGB2A1O75556 95 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms