RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 GVINP1Q7Z2Y8 2422 aa9.29□□□□□ -0.92
CUX1-218ENST00000560541 FBLL1A6NHQ2 334 aaKnown RBP9.29□□□□□ -0.92
CUX1-218ENST00000560541 ZNF253O75346 499 aa9.29□□□□□ -0.92
CUX1-218ENST00000560541 MPDU1O75352 247 aa9.29□□□□□ -0.92
CUX1-218ENST00000560541 ZNF883P0CG24 379 aa9.29□□□□□ -0.92
CUX1-218ENST00000560541 IGFBP2P18065 325 aa9.29□□□□□ -0.92
CUX1-218ENST00000560541 LOXL3P58215 753 aa9.29□□□□□ -0.92
CUX1-218ENST00000560541 PLP1P60201 277 aa9.29□□□□□ -0.92
CUX1-218ENST00000560541 MOGAT3Q86VF5 341 aa9.29□□□□□ -0.92
CUX1-218ENST00000560541 FDCSPQ8NFU4 85 aa9.29□□□□□ -0.92
CUX1-218ENST00000560541 OR4A5Q8NH83 315 aa9.29□□□□□ -0.92
CUX1-218ENST00000560541 CNIH1O95406 144 aa9.28□□□□□ -0.92
CUX1-218ENST00000560541 CGAP01215 116 aa9.28□□□□□ -0.92
CUX1-218ENST00000560541 GPX1P07203 203 aa9.28□□□□□ -0.92
CUX1-218ENST00000560541 SLC35B1P78383 322 aa9.28□□□□□ -0.92
CUX1-218ENST00000560541 FAM90A1Q86YD7 464 aa9.28□□□□□ -0.92
CUX1-218ENST00000560541 GCSAMQ8N6F7 178 aa9.28□□□□□ -0.92
CUX1-218ENST00000560541 SPRY3O43610 288 aa9.28□□□□□ -0.92
CUX1-218ENST00000560541 CA2P00918 260 aa9.28□□□□□ -0.92
CUX1-218ENST00000560541 TRIP6Q15654 476 aaKnown RBP9.28□□□□□ -0.92
CUX1-218ENST00000560541 MIR17HGQ75NE6 70 aa9.28□□□□□ -0.92
CUX1-218ENST00000560541 MUC15Q8N387 334 aa9.28□□□□□ -0.92
CUX1-218ENST00000560541 OR2V2Q96R30 315 aa9.28□□□□□ -0.92
CUX1-218ENST00000560541 NPVFQ9HCQ7 196 aa9.28□□□□□ -0.92
CUX1-218ENST00000560541 ZNRD1Q9P1U0 126 aa9.28□□□□□ -0.92
CUX1-218ENST00000560541 JPT1Q9UK76 154 aa9.28□□□□□ -0.92
CUX1-218ENST00000560541 DSCAMO60469 2012 aa9.28□□□□□ -0.92
CUX1-218ENST00000560541 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.28□□□□□ -0.92
CUX1-218ENST00000560541 IGLL1P15814 213 aa9.28□□□□□ -0.92
CUX1-218ENST00000560541 NPY1RP25929 384 aa9.28□□□□□ -0.92
CUX1-218ENST00000560541 IER3P46695 156 aa9.28□□□□□ -0.92
CUX1-218ENST00000560541 ASPHD1Q5U4P2 390 aa9.28□□□□□ -0.92
CUX1-218ENST00000560541 STUMQ69YW2 141 aa9.28□□□□□ -0.92
CUX1-218ENST00000560541 TEPPQ6URK8 271 aa9.28□□□□□ -0.92
CUX1-218ENST00000560541 DEFB108BQ8NET1 73 aa9.28□□□□□ -0.92
CUX1-218ENST00000560541 GEMIN7Q9H840 131 aaKnown RBP9.28□□□□□ -0.92
CUX1-218ENST00000560541 LSM4Q9Y4Z0 139 aaKnown RBP9.28□□□□□ -0.92
CUX1-218ENST00000560541 SAA2-SAA4A0A096LPE2 208 aa9.27□□□□□ -0.93
CUX1-218ENST00000560541 SRRM5B3KS81 715 aa9.27□□□□□ -0.93
CUX1-218ENST00000560541 CLEC3BP05452 202 aa9.27□□□□□ -0.93
CUX1-218ENST00000560541 SAA2P0DJI9 122 aaPredicted RBP9.27□□□□□ -0.93
CUX1-218ENST00000560541 GPR6P46095 362 aaPredicted RBP9.27□□□□□ -0.93
CUX1-218ENST00000560541 LRFN3Q9BTN0 628 aa9.27□□□□□ -0.93
CUX1-218ENST00000560541 MRPL18Q9H0U6 180 aaKnown RBP9.27□□□□□ -0.93
CUX1-218ENST00000560541 CALYQ9NYX4 217 aa9.27□□□□□ -0.93
CUX1-218ENST00000560541 TTC28Q96AY4 2481 aa9.27□□□□□ -0.93
CUX1-218ENST00000560541 J3KRW8 73 aa9.27□□□□□ -0.93
CUX1-218ENST00000560541 MGST3O14880 152 aa9.27□□□□□ -0.93
CUX1-218ENST00000560541 DOLPP1Q86YN1 238 aa9.27□□□□□ -0.93
CUX1-218ENST00000560541 ADGRG4Q8IZF6 3080 aa9.27□□□□□ -0.93
CUX1-218ENST00000560541 FAM231BA6NCW3 169 aa9.26□□□□□ -0.93
CUX1-218ENST00000560541 C15orf61A6NNL5 157 aa9.26□□□□□ -0.93
CUX1-218ENST00000560541 FCN1O00602 326 aa9.26□□□□□ -0.93
CUX1-218ENST00000560541 OR10J4P0C629 311 aa9.26□□□□□ -0.93
CUX1-218ENST00000560541 UQCRFS1P47985 274 aa9.26□□□□□ -0.93
CUX1-218ENST00000560541 TCL1AP56279 114 aa9.26□□□□□ -0.93
CUX1-218ENST00000560541 RHOBP62745 196 aa9.26□□□□□ -0.93
CUX1-218ENST00000560541 FXYD3Q14802 87 aa9.26□□□□□ -0.93
CUX1-218ENST00000560541 PSG5Q15238 335 aa9.26□□□□□ -0.93
CUX1-218ENST00000560541 CT45A1Q5HYN5 189 aa9.26□□□□□ -0.93
CUX1-218ENST00000560541 TRAT1Q6PIZ9 186 aa9.26□□□□□ -0.93
CUX1-218ENST00000560541 GTF2H5Q6ZYL4 71 aa9.26□□□□□ -0.93
CUX1-218ENST00000560541 CT45A3Q8NHU0 189 aa9.26□□□□□ -0.93
CUX1-218ENST00000560541 C19orf24Q9BVV8 132 aa9.26□□□□□ -0.93
CUX1-218ENST00000560541 ENY2Q9NPA8 101 aa9.26□□□□□ -0.93
CUX1-218ENST00000560541 A0A1B0GW15 77 aa9.26□□□□□ -0.93
CUX1-218ENST00000560541 SNURFLB1AK76 121 aa9.26□□□□□ -0.93
CUX1-218ENST00000560541 CRYBB3P26998 211 aa9.26□□□□□ -0.93
CUX1-218ENST00000560541 GUSBP1Q15486 140 aa9.26□□□□□ -0.93
CUX1-218ENST00000560541 TMEM249Q2WGJ8 235 aa9.26□□□□□ -0.93
CUX1-218ENST00000560541 BVES-AS1Q5T3Y7 98 aa9.26□□□□□ -0.93
CUX1-218ENST00000560541 OR52E5Q8NH55 327 aa9.26□□□□□ -0.93
CUX1-218ENST00000560541 GNB4Q9HAV0 340 aa9.26□□□□□ -0.93
CUX1-218ENST00000560541 OR51B2Q9Y5P1 312 aa9.26□□□□□ -0.93
CUX1-218ENST00000560541 TSSC4Q9Y5U2 329 aaPredicted RBP9.26□□□□□ -0.93
CUX1-218ENST00000560541 TMPRSS3P57727 454 aa9.26□□□□□ -0.93
CUX1-218ENST00000560541 MEF2CQ06413 473 aaPredicted RBP9.26□□□□□ -0.93
CUX1-218ENST00000560541 MLANAQ16655 118 aa9.26□□□□□ -0.93
CUX1-218ENST00000560541 PRR31Q5SQ13 230 aa9.26□□□□□ -0.93
CUX1-218ENST00000560541 BOD1L2Q8IYS8 172 aa9.26□□□□□ -0.93
CUX1-218ENST00000560541 RNASE7Q9H1E1 156 aaKnown RBP9.26□□□□□ -0.93
CUX1-218ENST00000560541 HIF1ANQ9NWT6 349 aa9.26□□□□□ -0.93
CUX1-218ENST00000560541 IL36BQ9NZH7 164 aa9.26□□□□□ -0.93
CUX1-218ENST00000560541 M0R1B8 84 aa9.25□□□□□ -0.93
CUX1-218ENST00000560541 CA7P43166 264 aa9.25□□□□□ -0.93
CUX1-218ENST00000560541 YPEL3P61236 119 aaPredicted RBP9.25□□□□□ -0.93
CUX1-218ENST00000560541 MMD2Q8IY49 270 aa9.25□□□□□ -0.93
CUX1-218ENST00000560541 PNKDQ8N490 385 aa9.25□□□□□ -0.93
CUX1-218ENST00000560541 DDB2Q92466 427 aa9.25□□□□□ -0.93
CUX1-218ENST00000560541 SNRNP40Q96DI7 357 aaKnown RBP9.25□□□□□ -0.93
CUX1-218ENST00000560541 EAF1Q96JC9 268 aaPredicted RBP9.25□□□□□ -0.93
CUX1-218ENST00000560541 RCHY1Q96PM5 261 aa9.25□□□□□ -0.93
CUX1-218ENST00000560541 CLEC7AQ9BXN2 247 aa9.25□□□□□ -0.93
CUX1-218ENST00000560541 GCM1Q9NP62 436 aa9.25□□□□□ -0.93
CUX1-218ENST00000560541 SP9P0CG40 484 aa9.25□□□□□ -0.93
CUX1-218ENST00000560541 CENPWQ5EE01 88 aa9.25□□□□□ -0.93
CUX1-218ENST00000560541 MBNL2Q5VZF2 373 aaKnown RBP9.25□□□□□ -0.93
CUX1-218ENST00000560541 PQLC2Q6ZP29 291 aa9.25□□□□□ -0.93
CUX1-218ENST00000560541 DEFB125Q8N687 156 aa9.25□□□□□ -0.93
CUX1-218ENST00000560541 PPP1R35Q8TAP8 253 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms