RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 RPL7L1Q6DKI1 246 aaKnown RBP4.74□□□□□ -1.65
LSM1-202ENST00000520286 SLC25A26Q70HW3 274 aa4.74□□□□□ -1.65
LSM1-202ENST00000520286 CALHM1Q8IU99 346 aa4.74□□□□□ -1.65
LSM1-202ENST00000520286 OR6K2Q8NGY2 324 aa4.74□□□□□ -1.65
LSM1-202ENST00000520286 C22orf15Q8WYQ4 148 aa4.74□□□□□ -1.65
LSM1-202ENST00000520286 FRZBQ92765 325 aa4.74□□□□□ -1.65
LSM1-202ENST00000520286 TMEM243Q9BU79 118 aa4.74□□□□□ -1.65
LSM1-202ENST00000520286 OR8D2Q9GZM6 311 aa4.74□□□□□ -1.65
LSM1-202ENST00000520286 TAF9BQ9HBM6 251 aa4.74□□□□□ -1.65
LSM1-202ENST00000520286 OR5AC2Q9NZP5 309 aa4.74□□□□□ -1.65
LSM1-202ENST00000520286 ANAPC10Q9UM13 185 aa4.74□□□□□ -1.65
LSM1-202ENST00000520286 KLF12Q9Y4X4 402 aa4.74□□□□□ -1.65
LSM1-202ENST00000520286 SPTA1P02549 2419 aa4.74□□□□□ -1.65
LSM1-202ENST00000520286 MYO18BQ8IUG5 2567 aa4.73□□□□□ -1.65
LSM1-202ENST00000520286 EML5Q05BV3 1969 aa4.73□□□□□ -1.65
LSM1-202ENST00000520286 NACAE9PAV3 2078 aa4.73□□□□□ -1.65
LSM1-202ENST00000520286 TRBV24-1A0A075B6N3 115 aa4.73□□□□□ -1.65
LSM1-202ENST00000520286 TRAV8-7A0A075B6U6 113 aa4.73□□□□□ -1.65
LSM1-202ENST00000520286 IGHV1OR15-9A0A0B4J2B8 117 aa4.73□□□□□ -1.65
LSM1-202ENST00000520286 A0A0U1RQV1 116 aa4.73□□□□□ -1.65
LSM1-202ENST00000520286 TMEM235A6NFC5 223 aa4.73□□□□□ -1.65
LSM1-202ENST00000520286 ZNF736B4DX44 427 aaPredicted RBP4.73□□□□□ -1.65
LSM1-202ENST00000520286 PPBPP02775 128 aa4.73□□□□□ -1.65
LSM1-202ENST00000520286 PET100P0DJ07 73 aa4.73□□□□□ -1.65
LSM1-202ENST00000520286 RPS4Y1P22090 263 aaKnown RBP4.73□□□□□ -1.65
LSM1-202ENST00000520286 APLNRP35414 380 aa4.73□□□□□ -1.65
LSM1-202ENST00000520286 ARR3P36575 388 aa4.73□□□□□ -1.65
LSM1-202ENST00000520286 PPOXP50336 477 aa4.73□□□□□ -1.65
LSM1-202ENST00000520286 UCNP55089 124 aa4.73□□□□□ -1.65
LSM1-202ENST00000520286 GFERP55789 205 aa4.73□□□□□ -1.65
LSM1-202ENST00000520286 TBPL1P62380 186 aa4.73□□□□□ -1.65
LSM1-202ENST00000520286 RPL31P62899 125 aaKnown RBP4.73□□□□□ -1.65
LSM1-202ENST00000520286 FOXF1Q12946 379 aa4.73□□□□□ -1.65
LSM1-202ENST00000520286 PRDX4Q13162 271 aa4.73□□□□□ -1.65
LSM1-202ENST00000520286 CCSMST1Q4G0I0 132 aa4.73□□□□□ -1.65
LSM1-202ENST00000520286 AKR1C8PQ5T2L2 129 aa4.73□□□□□ -1.65
LSM1-202ENST00000520286 OR2T2Q6IF00 324 aa4.73□□□□□ -1.65
LSM1-202ENST00000520286 OLIG3Q7RTU3 272 aa4.73□□□□□ -1.65
LSM1-202ENST00000520286 CYB561D1Q8N8Q1 229 aa4.73□□□□□ -1.65
LSM1-202ENST00000520286 NEK7Q8TDX7 302 aa4.73□□□□□ -1.65
LSM1-202ENST00000520286 KLK6Q92876 244 aa4.73□□□□□ -1.65
LSM1-202ENST00000520286 RERGQ96A58 199 aaPredicted RBP4.73□□□□□ -1.65
LSM1-202ENST00000520286 PRAP1Q96NZ9 151 aa4.73□□□□□ -1.65
LSM1-202ENST00000520286 GINS3Q9BRX5 216 aa4.73□□□□□ -1.65
LSM1-202ENST00000520286 PBDC1Q9BVG4 233 aa4.73□□□□□ -1.65
LSM1-202ENST00000520286 MS4A8Q9BY19 250 aa4.73□□□□□ -1.65
LSM1-202ENST00000520286 ANGPTL4Q9BY76 406 aa4.73□□□□□ -1.65
LSM1-202ENST00000520286 ZNF442Q9H7R0 627 aa4.73□□□□□ -1.65
LSM1-202ENST00000520286 TMEM242Q9NWH2 141 aa4.73□□□□□ -1.65
LSM1-202ENST00000520286 VAX2Q9UIW0 290 aa4.73□□□□□ -1.65
LSM1-202ENST00000520286 GNG8Q9UK08 70 aa4.73□□□□□ -1.65
LSM1-202ENST00000520286 OR51B4Q9Y5P0 310 aa4.73□□□□□ -1.65
LSM1-202ENST00000520286 ASCC3Q8N3C0 2202 aaKnown RBP4.73□□□□□ -1.65
LSM1-202ENST00000520286 KALRNO60229 2985 aa4.73□□□□□ -1.65
LSM1-202ENST00000520286 CXorf51AA0A1B0GTR3 108 aa4.72□□□□□ -1.65
LSM1-202ENST00000520286 OR4C45A6NMZ5 311 aa4.72□□□□□ -1.65
LSM1-202ENST00000520286 B4DEV8 164 aa4.72□□□□□ -1.65
LSM1-202ENST00000520286 EEF1E1-BLOC1S5C9J1V9 151 aa4.72□□□□□ -1.65
LSM1-202ENST00000520286 LINC01619G3V211 115 aa4.72□□□□□ -1.65
LSM1-202ENST00000520286 K7ERQ8 282 aa4.72□□□□□ -1.65
LSM1-202ENST00000520286 SFT2D2O95562 160 aa4.72□□□□□ -1.65
LSM1-202ENST00000520286 TRGC2P03986 189 aa4.72□□□□□ -1.65
LSM1-202ENST00000520286 GNRHRP30968 328 aa4.72□□□□□ -1.65
LSM1-202ENST00000520286 RHOAP61586 193 aa4.72□□□□□ -1.65
LSM1-202ENST00000520286 RPS24P62847 133 aaKnown RBP4.72□□□□□ -1.65
LSM1-202ENST00000520286 SLC35A1P78382 337 aa4.72□□□□□ -1.65
LSM1-202ENST00000520286 SYCNQ0VAF6 134 aa4.72□□□□□ -1.65
LSM1-202ENST00000520286 TAL2Q16559 108 aa4.72□□□□□ -1.65
LSM1-202ENST00000520286 TMEM176BQ3YBM2 270 aaPredicted RBP4.72□□□□□ -1.65
LSM1-202ENST00000520286 KHDRBS2Q5VWX1 349 aaKnown RBP4.72□□□□□ -1.65
LSM1-202ENST00000520286 NTM-AS1Q6ZSK4 140 aa4.72□□□□□ -1.65
LSM1-202ENST00000520286 Q6ZVH6 145 aa4.72□□□□□ -1.65
LSM1-202ENST00000520286 SLC35E3Q7Z769 313 aa4.72□□□□□ -1.65
LSM1-202ENST00000520286 KRTAP11-1Q8IUC1 163 aa4.72□□□□□ -1.65
LSM1-202ENST00000520286 WDFY1Q8IWB7 410 aa4.72□□□□□ -1.65
LSM1-202ENST00000520286 ZNF101Q8IZC7 436 aa4.72□□□□□ -1.65
LSM1-202ENST00000520286 OR51A2Q8NGJ7 313 aa4.72□□□□□ -1.65
LSM1-202ENST00000520286 OR1P1Q8NH06 330 aa4.72□□□□□ -1.65
LSM1-202ENST00000520286 ZNF563Q8TA94 476 aa4.72□□□□□ -1.65
LSM1-202ENST00000520286 C2orf15Q8WU43 125 aaKnown RBP4.72□□□□□ -1.65
LSM1-202ENST00000520286 TMEM239Q8WW34 195 aa4.72□□□□□ -1.65
LSM1-202ENST00000520286 AQP3Q92482 292 aa4.72□□□□□ -1.65
LSM1-202ENST00000520286 CDS1Q92903 461 aa4.72□□□□□ -1.65
LSM1-202ENST00000520286 FLYWCH2Q96CP2 140 aaKnown RBP4.72□□□□□ -1.65
LSM1-202ENST00000520286 CMBLQ96DG6 245 aa4.72□□□□□ -1.65
LSM1-202ENST00000520286 MS4A6EQ96DS6 147 aa4.72□□□□□ -1.65
LSM1-202ENST00000520286 ZMYND19Q96E35 227 aaPredicted RBP4.72□□□□□ -1.65
LSM1-202ENST00000520286 C2orf50Q96LR7 162 aa4.72□□□□□ -1.65
LSM1-202ENST00000520286 OR7D2Q96RA2 312 aa4.72□□□□□ -1.65
LSM1-202ENST00000520286 C20orf144Q9BQM9 153 aa4.72□□□□□ -1.65
LSM1-202ENST00000520286 KRTAP17-1Q9BYP8 105 aa4.72□□□□□ -1.65
LSM1-202ENST00000520286 FARSAQ9Y285 508 aaKnown RBP4.72□□□□□ -1.65
LSM1-202ENST00000520286 ZNF443Q9Y2A4 671 aaPredicted RBP4.72□□□□□ -1.65
LSM1-202ENST00000520286 CELSR3Q9NYQ7 3312 aa4.72□□□□□ -1.65
LSM1-202ENST00000520286 ACACAQ13085 2346 aa4.71□□□□□ -1.66
LSM1-202ENST00000520286 A0A0A6YYD5 115 aa4.71□□□□□ -1.66
LSM1-202ENST00000520286 TGIF2-C20orf24A0A0A6YYL0 155 aa4.71□□□□□ -1.66
LSM1-202ENST00000520286 MEIS3P1A6NDR6 274 aa4.71□□□□□ -1.66
LSM1-202ENST00000520286 PPP5D1E7EU14 171 aa4.71□□□□□ -1.66
LSM1-202ENST00000520286 NDUFC2-KCTD14E9PQ53 114 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms