RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 GALR1P47211 349 aa16.87■□□□□ 0.29
CCDC88B-208ENST00000492980 ZNF90Q03938 601 aa16.87■□□□□ 0.29
CCDC88B-208ENST00000492980 FABP9Q0Z7S8 132 aa16.87■□□□□ 0.29
CCDC88B-208ENST00000492980 MISP3Q96FF7 219 aa16.87■□□□□ 0.29
CCDC88B-208ENST00000492980 C8orf88P0DMB2 117 aa16.87■□□□□ 0.29
CCDC88B-208ENST00000492980 RUSC1-AS1Q66K80 236 aa16.87■□□□□ 0.29
CCDC88B-208ENST00000492980 ETFRF1Q6IPR1 90 aa16.87■□□□□ 0.29
CCDC88B-208ENST00000492980 CFHR4Q92496 578 aa16.87■□□□□ 0.29
CCDC88B-208ENST00000492980 RNF2Q99496 336 aa16.87■□□□□ 0.29
CCDC88B-208ENST00000492980 PYGO2Q9BRQ0 406 aa16.87■□□□□ 0.29
CCDC88B-208ENST00000492980 PGPEP1LA6NFU8 196 aa16.86■□□□□ 0.29
CCDC88B-208ENST00000492980 FCN1O00602 326 aa16.86■□□□□ 0.29
CCDC88B-208ENST00000492980 OR7C2O60412 319 aa16.86■□□□□ 0.29
CCDC88B-208ENST00000492980 TRGC2P03986 189 aa16.86■□□□□ 0.29
CCDC88B-208ENST00000492980 MORN5Q5VZ52 161 aa16.86■□□□□ 0.29
CCDC88B-208ENST00000492980 OR1P1Q8NH06 330 aa16.86■□□□□ 0.29
CCDC88B-208ENST00000492980 UHRF2Q96PU4 802 aa16.86■□□□□ 0.29
CCDC88B-208ENST00000492980 OR5B12Q96R08 314 aa16.86■□□□□ 0.29
CCDC88B-208ENST00000492980 ELOVL1Q9BW60 279 aa16.86■□□□□ 0.29
CCDC88B-208ENST00000492980 DNAJC4Q9NNZ3 241 aa16.86■□□□□ 0.29
CCDC88B-208ENST00000492980 AURKAIP1Q9NWT8 199 aaPredicted RBP16.86■□□□□ 0.29
CCDC88B-208ENST00000492980 HILPDAQ9Y5L2 63 aa16.86■□□□□ 0.29
CCDC88B-208ENST00000492980 CACNA1AO00555 2505 aa16.85■□□□□ 0.29
CCDC88B-208ENST00000492980 CEACAM3P40198 252 aa16.85■□□□□ 0.29
CCDC88B-208ENST00000492980 LHFPL4Q7Z7J7 247 aa16.85■□□□□ 0.29
CCDC88B-208ENST00000492980 SRSF12Q8WXF0 261 aaKnown RBP16.85■□□□□ 0.29
CCDC88B-208ENST00000492980 FAM167A-AS1Q96KT0 104 aa16.85■□□□□ 0.29
CCDC88B-208ENST00000492980 TGOLN2O43493 480 aa16.85■□□□□ 0.29
CCDC88B-208ENST00000492980 SELENOTP62341 195 aa16.85■□□□□ 0.29
CCDC88B-208ENST00000492980 SLC25A2Q9BXI2 301 aa16.85■□□□□ 0.29
CCDC88B-208ENST00000492980 COX7A2P2O60397 106 aa16.84■□□□□ 0.29
CCDC88B-208ENST00000492980 CD99P14209 185 aa16.84■□□□□ 0.29
CCDC88B-208ENST00000492980 S100PP25815 95 aa16.84■□□□□ 0.29
CCDC88B-208ENST00000492980 ZFP36P26651 326 aaKnown RBP16.84■□□□□ 0.29
CCDC88B-208ENST00000492980 PATE2Q6UY27 113 aa16.84■□□□□ 0.29
CCDC88B-208ENST00000492980 KIR3DL3Q8N743 410 aa16.84■□□□□ 0.29
CCDC88B-208ENST00000492980 OR1L4Q8NGR5 311 aa16.84■□□□□ 0.29
CCDC88B-208ENST00000492980 F11RQ9Y624 299 aaKnown RBP16.84■□□□□ 0.29
CCDC88B-208ENST00000492980 TRAV5A0A0B4J249 113 aa16.84■□□□□ 0.29
CCDC88B-208ENST00000492980 PAX2Q02962 417 aa16.84■□□□□ 0.29
CCDC88B-208ENST00000492980 PLGLAQ15195 96 aa16.84■□□□□ 0.29
CCDC88B-208ENST00000492980 C1orf122Q6ZSJ8 110 aa16.84■□□□□ 0.29
CCDC88B-208ENST00000492980 IGFBPL1Q8WX77 278 aa16.84■□□□□ 0.29
CCDC88B-208ENST00000492980 PFDN5Q99471 154 aa16.84■□□□□ 0.29
CCDC88B-208ENST00000492980 DMRT1Q9Y5R6 373 aa16.84■□□□□ 0.29
CCDC88B-208ENST00000492980 PKD1L2Q7Z442 2459 aa16.83■□□□□ 0.29
CCDC88B-208ENST00000492980 PIEZO1Q92508 2521 aa16.83■□□□□ 0.29
CCDC88B-208ENST00000492980 CORTO00230 105 aa16.83■□□□□ 0.28
CCDC88B-208ENST00000492980 OR10J4P0C629 311 aa16.83■□□□□ 0.28
CCDC88B-208ENST00000492980 EFNA4P52798 201 aa16.83■□□□□ 0.28
CCDC88B-208ENST00000492980 MMDQ15546 238 aa16.83■□□□□ 0.28
CCDC88B-208ENST00000492980 VMO1Q7Z5L0 202 aa16.83■□□□□ 0.28
CCDC88B-208ENST00000492980 OR4X1Q8NH49 305 aa16.83■□□□□ 0.28
CCDC88B-208ENST00000492980 HIST1H2BKO60814 126 aa16.82■□□□□ 0.28
CCDC88B-208ENST00000492980 HIST1H2BJP06899 126 aa16.82■□□□□ 0.28
CCDC88B-208ENST00000492980 HIST1H2BOP23527 126 aa16.82■□□□□ 0.28
CCDC88B-208ENST00000492980 HIST1H2BBP33778 126 aa16.82■□□□□ 0.28
CCDC88B-208ENST00000492980 LGALS4P56470 323 aa16.82■□□□□ 0.28
CCDC88B-208ENST00000492980 HIST1H2BDP58876 126 aa16.82■□□□□ 0.28
CCDC88B-208ENST00000492980 HIST1H2BCP62807 126 aa16.82■□□□□ 0.28
CCDC88B-208ENST00000492980 HIST2H2BEQ16778 126 aa16.82■□□□□ 0.28
CCDC88B-208ENST00000492980 HIST2H2BFQ5QNW6 126 aaPredicted RBP16.82■□□□□ 0.28
CCDC88B-208ENST00000492980 C10orf113Q5VZT2 155 aa16.82■□□□□ 0.28
CCDC88B-208ENST00000492980 HIST1H2BHQ93079 126 aa16.82■□□□□ 0.28
CCDC88B-208ENST00000492980 HIST1H2BNQ99877 126 aa16.82■□□□□ 0.28
CCDC88B-208ENST00000492980 HIST1H2BMQ99879 126 aa16.82■□□□□ 0.28
CCDC88B-208ENST00000492980 TNFRSF19Q9NS68 423 aa16.82■□□□□ 0.28
CCDC88B-208ENST00000492980 A0A1W2PRD5 423 aa16.82■□□□□ 0.28
CCDC88B-208ENST00000492980 A0A1W2PRF3 423 aa16.82■□□□□ 0.28
CCDC88B-208ENST00000492980 A0A1W2PRM7 423 aa16.82■□□□□ 0.28
CCDC88B-208ENST00000492980 PHOX2AO14813 284 aa16.82■□□□□ 0.28
CCDC88B-208ENST00000492980 MOSP00540 346 aa16.82■□□□□ 0.28
CCDC88B-208ENST00000492980 SRP14P37108 136 aaKnown RBP16.82■□□□□ 0.28
CCDC88B-208ENST00000492980 BPIFB3P59826 476 aa16.82■□□□□ 0.28
CCDC88B-208ENST00000492980 TMEM116Q8NCL8 245 aa16.82■□□□□ 0.28
CCDC88B-208ENST00000492980 TMEM8BA6NDV4 472 aa16.81■□□□□ 0.28
CCDC88B-208ENST00000492980 NBR2O15453 112 aa16.81■□□□□ 0.28
CCDC88B-208ENST00000492980 OR5AU1Q8NGC0 362 aa16.81■□□□□ 0.28
CCDC88B-208ENST00000492980 OCC1Q8TAD7 63 aa16.81■□□□□ 0.28
CCDC88B-208ENST00000492980 C22orf15Q8WYQ4 148 aa16.81■□□□□ 0.28
CCDC88B-208ENST00000492980 TRGV9Q99603 122 aa16.81■□□□□ 0.28
CCDC88B-208ENST00000492980 SRD5A3Q9H8P0 318 aa16.81■□□□□ 0.28
CCDC88B-208ENST00000492980 ZNF355PQ9NSJ1 428 aa16.81■□□□□ 0.28
CCDC88B-208ENST00000492980 TACC2O95359 2948 aa16.81■□□□□ 0.28
CCDC88B-208ENST00000492980 IGHV3-21A0A0B4J1V1 117 aa16.81■□□□□ 0.28
CCDC88B-208ENST00000492980 GGTLC3B5MD39 225 aa16.81■□□□□ 0.28
CCDC88B-208ENST00000492980 C9JCJ5 164 aa16.81■□□□□ 0.28
CCDC88B-208ENST00000492980 NPBQ8NG41 125 aa16.81■□□□□ 0.28
CCDC88B-208ENST00000492980 FRZBQ92765 325 aa16.81■□□□□ 0.28
CCDC88B-208ENST00000492980 SFRP2Q96HF1 295 aa16.81■□□□□ 0.28
CCDC88B-208ENST00000492980 SRSF8Q9BRL6 282 aaKnown RBP16.81■□□□□ 0.28
CCDC88B-208ENST00000492980 A0A1W2PRE2 83 aa16.8■□□□□ 0.28
CCDC88B-208ENST00000492980 ZNF98A6NK75 572 aa16.8■□□□□ 0.28
CCDC88B-208ENST00000492980 PPP1R2P9O14990 202 aa16.8■□□□□ 0.28
CCDC88B-208ENST00000492980 GGCTO75223 188 aaKnown RBP16.8■□□□□ 0.28
CCDC88B-208ENST00000492980 NDUFA3O95167 84 aa16.8■□□□□ 0.28
CCDC88B-208ENST00000492980 HOXB4P17483 251 aaPredicted RBP16.8■□□□□ 0.28
CCDC88B-208ENST00000492980 CD24P25063 80 aa16.8■□□□□ 0.28
CCDC88B-208ENST00000492980 FBLN7Q53RD9 439 aa16.8■□□□□ 0.28
CCDC88B-208ENST00000492980 EAF1Q96JC9 268 aaPredicted RBP16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms