RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 FAM58AQ8N1B3 248 aa3.95□□□□□ -1.78
USP40-213ENST00000483216 VN1R2Q8NFZ6 395 aa3.95□□□□□ -1.78
USP40-213ENST00000483216 OR10G3Q8NGC4 313 aa3.95□□□□□ -1.78
USP40-213ENST00000483216 OR5A1Q8NGJ0 315 aa3.95□□□□□ -1.78
USP40-213ENST00000483216 MRPL30Q8TCC3 161 aaKnown RBP3.95□□□□□ -1.78
USP40-213ENST00000483216 RNF138Q8WVD3 245 aa3.95□□□□□ -1.78
USP40-213ENST00000483216 FAM3CQ92520 227 aa3.95□□□□□ -1.78
USP40-213ENST00000483216 MRGPRFQ96AM1 343 aa3.95□□□□□ -1.78
USP40-213ENST00000483216 ELSPBP1Q96BH3 223 aa3.95□□□□□ -1.78
USP40-213ENST00000483216 APH1AQ96BI3 265 aa3.95□□□□□ -1.78
USP40-213ENST00000483216 ARHGAP5-AS1Q96IT6 56 aa3.95□□□□□ -1.78
USP40-213ENST00000483216 SPXQ9BT56 116 aa3.95□□□□□ -1.78
USP40-213ENST00000483216 FAAP24Q9BTP7 215 aa3.95□□□□□ -1.78
USP40-213ENST00000483216 PECRQ9BY49 303 aa3.95□□□□□ -1.78
USP40-213ENST00000483216 ULBP3Q9BZM4 244 aa3.95□□□□□ -1.78
USP40-213ENST00000483216 WDR61Q9GZS3 305 aaKnown RBP3.95□□□□□ -1.78
USP40-213ENST00000483216 MS4A6AQ9H2W1 248 aa3.95□□□□□ -1.78
USP40-213ENST00000483216 TUBG2Q9NRH3 451 aa3.95□□□□□ -1.78
USP40-213ENST00000483216 FAM206AQ9NX38 181 aa3.95□□□□□ -1.78
USP40-213ENST00000483216 RHBDD3Q9Y3P4 386 aa3.95□□□□□ -1.78
USP40-213ENST00000483216 KIF26AQ9ULI4 1882 aaPredicted RBP3.94□□□□□ -1.78
USP40-213ENST00000483216 CHD7Q9P2D1 2997 aa3.94□□□□□ -1.78
USP40-213ENST00000483216 A0A0G2JN53 185 aa3.94□□□□□ -1.78
USP40-213ENST00000483216 A0A0J9YY10 115 aa3.94□□□□□ -1.78
USP40-213ENST00000483216 A0A1W2PNV4 684 aa3.94□□□□□ -1.78
USP40-213ENST00000483216 A0A1W2PPV4 95 aa3.94□□□□□ -1.78
USP40-213ENST00000483216 VSTM2BA6NLU5 285 aa3.94□□□□□ -1.78
USP40-213ENST00000483216 CD300LBA8K4G0 201 aa3.94□□□□□ -1.78
USP40-213ENST00000483216 PLPP3O14495 311 aa3.94□□□□□ -1.78
USP40-213ENST00000483216 RTL8CO15255 209 aa3.94□□□□□ -1.78
USP40-213ENST00000483216 VAMP5O95183 116 aa3.94□□□□□ -1.78
USP40-213ENST00000483216 HLA-DRB1P01911 266 aa3.94□□□□□ -1.78
USP40-213ENST00000483216 BGLAPP02818 100 aa3.94□□□□□ -1.78
USP40-213ENST00000483216 OR10J4P0C629 311 aa3.94□□□□□ -1.78
USP40-213ENST00000483216 CCNOP22674 350 aa3.94□□□□□ -1.78
USP40-213ENST00000483216 CD1BP29016 333 aa3.94□□□□□ -1.78
USP40-213ENST00000483216 DYNLT3P51808 116 aa3.94□□□□□ -1.78
USP40-213ENST00000483216 PRRX1P54821 245 aa3.94□□□□□ -1.78
USP40-213ENST00000483216 ATP5IP56385 69 aaPredicted RBP3.94□□□□□ -1.78
USP40-213ENST00000483216 RPL23P62829 140 aaKnown RBP3.94□□□□□ -1.78
USP40-213ENST00000483216 ZNF90Q03938 601 aa3.94□□□□□ -1.78
USP40-213ENST00000483216 PSG7Q13046 419 aa3.94□□□□□ -1.78
USP40-213ENST00000483216 PDGFRLQ15198 375 aa3.94□□□□□ -1.78
USP40-213ENST00000483216 RPEL1Q2QD12 228 aa3.94□□□□□ -1.78
USP40-213ENST00000483216 HLA-DRB5Q30154 266 aa3.94□□□□□ -1.78
USP40-213ENST00000483216 SPATA45Q537H7 98 aa3.94□□□□□ -1.78
USP40-213ENST00000483216 OCIAD2Q56VL3 154 aa3.94□□□□□ -1.78
USP40-213ENST00000483216 PHYHD1Q5SRE7 291 aa3.94□□□□□ -1.78
USP40-213ENST00000483216 LCE3AQ5TA76 89 aa3.94□□□□□ -1.78
USP40-213ENST00000483216 RAET1LQ5VY80 246 aa3.94□□□□□ -1.78
USP40-213ENST00000483216 ZNF880Q6PDB4 577 aa3.94□□□□□ -1.78
USP40-213ENST00000483216 PPP1R27Q86WC6 154 aa3.94□□□□□ -1.78
USP40-213ENST00000483216 WDFY1Q8IWB7 410 aa3.94□□□□□ -1.78
USP40-213ENST00000483216 BCORP1Q8N888 145 aa3.94□□□□□ -1.78
USP40-213ENST00000483216 WDR31Q8NA23 367 aa3.94□□□□□ -1.78
USP40-213ENST00000483216 LINC01555Q8NAE3 123 aa3.94□□□□□ -1.78
USP40-213ENST00000483216 TSTD1Q8NFU3 115 aa3.94□□□□□ -1.78
USP40-213ENST00000483216 OR4S2Q8NH73 311 aa3.94□□□□□ -1.78
USP40-213ENST00000483216 REEP6Q96HR9 211 aa3.94□□□□□ -1.78
USP40-213ENST00000483216 JSRP1Q96MG2 331 aaPredicted RBP3.94□□□□□ -1.78
USP40-213ENST00000483216 OR2A5Q96R48 311 aa3.94□□□□□ -1.78
USP40-213ENST00000483216 SPANXDQ9BXN6 97 aa3.94□□□□□ -1.78
USP40-213ENST00000483216 ZNF430Q9H8G1 570 aaPredicted RBP3.94□□□□□ -1.78
USP40-213ENST00000483216 PRTFDC1Q9NRG1 225 aa3.94□□□□□ -1.78
USP40-213ENST00000483216 MRPL22Q9NWU5 206 aaKnown RBP3.94□□□□□ -1.78
USP40-213ENST00000483216 SPANXCQ9NY87 97 aa3.94□□□□□ -1.78
USP40-213ENST00000483216 DEC1Q9P2X7 70 aa3.94□□□□□ -1.78
USP40-213ENST00000483216 ONECUT1Q9UBC0 465 aa3.94□□□□□ -1.78
USP40-213ENST00000483216 RPH3ALQ9UNE2 315 aa3.94□□□□□ -1.78
USP40-213ENST00000483216 SLC17A4Q9Y2C5 497 aa3.94□□□□□ -1.78
USP40-213ENST00000483216 YTHDF2Q9Y5A9 579 aaKnown RBP3.94□□□□□ -1.78
USP40-213ENST00000483216 OR51B2Q9Y5P1 312 aa3.94□□□□□ -1.78
USP40-213ENST00000483216 PRUNE2Q8WUY3 3088 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 MYO9BQ13459 2157 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 C2orf16Q68DN1 1984 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 IGHV2-26A0A0B4J1V2 119 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 IGKV1-8A0A0C4DH67 115 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 LOC102725191A0A1B0GVB3 256 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 A0A1W2PRS3 328 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 C9JCJ5 164 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 PRAMEF26H0Y7S4 382 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 CORTO00230 105 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 FCN1O00602 326 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 SOCS1O15524 211 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 SYNGR2O43760 224 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 CD5LO43866 347 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 SSSCA1O60232 199 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 ZNF861PO60384 105 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 UTS2O95399 124 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 CXorf1O96002 111 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 PPYP01298 95 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 GYPAP02724 150 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 TTRP02766 147 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 OR4A8P0C604 315 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 IGLC2P0DOY2 106 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 IGLC3P0DOY3 106 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 P2RY2P41231 377 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 GPM6AP51674 278 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 PCBD1P61457 104 aa3.93□□□□□ -1.78
USP40-213ENST00000483216 RPL8P62917 257 aaKnown RBP3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms