RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 LHFPL5Q8TAF8 219 aa13.82□□□□□ -0.2
CCDC88B-206ENST00000473405 PDCD10Q9BUL8 212 aa13.82□□□□□ -0.2
CCDC88B-206ENST00000473405 MRPS26Q9BYN8 205 aaKnown RBP13.82□□□□□ -0.2
CCDC88B-206ENST00000473405 TMEM222Q9H0R3 208 aa13.82□□□□□ -0.2
CCDC88B-206ENST00000473405 IGHV3-66A0A0C4DH42 116 aa13.81□□□□□ -0.2
CCDC88B-206ENST00000473405 CORTO00230 105 aa13.81□□□□□ -0.2
CCDC88B-206ENST00000473405 CTDSP2O14595 271 aa13.81□□□□□ -0.2
CCDC88B-206ENST00000473405 RGS5O15539 181 aa13.81□□□□□ -0.2
CCDC88B-206ENST00000473405 B3GALNT1O75752 331 aa13.81□□□□□ -0.2
CCDC88B-206ENST00000473405 CDS2O95674 445 aa13.81□□□□□ -0.2
CCDC88B-206ENST00000473405 SMIM4Q8WVI0 70 aa13.81□□□□□ -0.2
CCDC88B-206ENST00000473405 RRNAD1Q96FB5 475 aaKnown RBP13.81□□□□□ -0.2
CCDC88B-206ENST00000473405 RTBDNQ9BSG5 229 aaPredicted RBP13.81□□□□□ -0.2
CCDC88B-206ENST00000473405 C6orf62Q9GZU0 229 aaPredicted RBP13.81□□□□□ -0.2
CCDC88B-206ENST00000473405 CSTL1Q9H114 145 aa13.81□□□□□ -0.2
CCDC88B-206ENST00000473405 MS4A6AQ9H2W1 248 aa13.81□□□□□ -0.2
CCDC88B-206ENST00000473405 DFFBO76075 338 aa13.8□□□□□ -0.2
CCDC88B-206ENST00000473405 OR5AC1P0C628 307 aa13.8□□□□□ -0.2
CCDC88B-206ENST00000473405 SUB1P53999 127 aaKnown RBP eCLIP13.8□□□□□ -0.2
CCDC88B-206ENST00000473405 CMC4P56277 68 aaPredicted RBP13.8□□□□□ -0.2
CCDC88B-206ENST00000473405 FAM24BQ8N5W8 94 aa13.8□□□□□ -0.2
CCDC88B-206ENST00000473405 GLYATL2Q8WU03 294 aa13.8□□□□□ -0.2
CCDC88B-206ENST00000473405 CLN5O75503 358 aa13.79□□□□□ -0.2
CCDC88B-206ENST00000473405 CD5P06127 495 aa13.79□□□□□ -0.2
CCDC88B-206ENST00000473405 OPRK1P41145 380 aa13.79□□□□□ -0.2
CCDC88B-206ENST00000473405 MRPS10P82664 201 aaKnown RBP13.79□□□□□ -0.2
CCDC88B-206ENST00000473405 MEF2DQ14814 521 aa13.79□□□□□ -0.2
CCDC88B-206ENST00000473405 MLANAQ16655 118 aa13.79□□□□□ -0.2
CCDC88B-206ENST00000473405 CEMP1Q6PRD7 247 aaPredicted RBP13.79□□□□□ -0.2
CCDC88B-206ENST00000473405 GPR141Q7Z602 305 aa13.79□□□□□ -0.2
CCDC88B-206ENST00000473405 FAM219AQ8IW50 185 aa13.79□□□□□ -0.2
CCDC88B-206ENST00000473405 OR4C16Q8NGL9 310 aa13.79□□□□□ -0.2
CCDC88B-206ENST00000473405 OR4X1Q8NH49 305 aa13.79□□□□□ -0.2
CCDC88B-206ENST00000473405 RNASE11Q8TAA1 199 aaKnown RBP13.79□□□□□ -0.2
CCDC88B-206ENST00000473405 NAA60Q9H7X0 242 aa13.79□□□□□ -0.2
CCDC88B-206ENST00000473405 AGRNO00468 2067 aa13.78□□□□□ -0.2
CCDC88B-206ENST00000473405 TRAV2A0A0B4J234 112 aa13.78□□□□□ -0.2
CCDC88B-206ENST00000473405 MPTX1A8MV57 137 aa13.78□□□□□ -0.2
CCDC88B-206ENST00000473405 IGKV1-17P01599 117 aa13.78□□□□□ -0.2
CCDC88B-206ENST00000473405 RPL5P46777 297 aaKnown RBP13.78□□□□□ -0.2
CCDC88B-206ENST00000473405 SPCS3P61009 180 aa13.78□□□□□ -0.2
CCDC88B-206ENST00000473405 PAFAH1B2P68402 229 aa13.78□□□□□ -0.2
CCDC88B-206ENST00000473405 SURF2Q15527 256 aaPredicted RBP13.78□□□□□ -0.2
CCDC88B-206ENST00000473405 GATAD1Q8WUU5 269 aa13.78□□□□□ -0.2
CCDC88B-206ENST00000473405 RBPMSQ93062 196 aaKnown RBP13.78□□□□□ -0.2
CCDC88B-206ENST00000473405 ENY2Q9NPA8 101 aa13.78□□□□□ -0.2
CCDC88B-206ENST00000473405 C14orf166Q9Y224 244 aaKnown RBP13.78□□□□□ -0.2
CCDC88B-206ENST00000473405 TEX13DA0A0J9YY54 714 aaPredicted RBP13.77□□□□□ -0.21
CCDC88B-206ENST00000473405 CRYM-AS1A6NIL9 109 aa13.77□□□□□ -0.21
CCDC88B-206ENST00000473405 LEMD1Q68G75 181 aa13.77□□□□□ -0.21
CCDC88B-206ENST00000473405 SELENOHQ8IZQ5 122 aaKnown RBP13.77□□□□□ -0.21
CCDC88B-206ENST00000473405 TMEM217Q8N7C4 229 aa13.77□□□□□ -0.21
CCDC88B-206ENST00000473405 OR52E5Q8NH55 327 aa13.77□□□□□ -0.21
CCDC88B-206ENST00000473405 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.77□□□□□ -0.21
CCDC88B-206ENST00000473405 CACNG5Q9UF02 275 aa13.77□□□□□ -0.21
CCDC88B-206ENST00000473405 CTDSPLO15194 276 aa13.76□□□□□ -0.21
CCDC88B-206ENST00000473405 LY6G6CO95867 125 aa13.76□□□□□ -0.21
CCDC88B-206ENST00000473405 CRYBB3P26998 211 aa13.76□□□□□ -0.21
CCDC88B-206ENST00000473405 DEFB131AP59861 70 aa13.76□□□□□ -0.21
CCDC88B-206ENST00000473405 TIGITQ495A1 244 aa13.76□□□□□ -0.21
CCDC88B-206ENST00000473405 DYNC2LI1Q8TCX1 351 aa13.76□□□□□ -0.21
CCDC88B-206ENST00000473405 VPS13DQ5THJ4 4388 aa13.75□□□□□ -0.21
CCDC88B-206ENST00000473405 HECTD4Q9Y4D8 3996 aa13.75□□□□□ -0.21
CCDC88B-206ENST00000473405 DISC1C4P0D8 188 aa13.75□□□□□ -0.21
CCDC88B-206ENST00000473405 DNASE2O00115 360 aaPredicted RBP13.75□□□□□ -0.21
CCDC88B-206ENST00000473405 CA1P00915 261 aaPredicted RBP13.75□□□□□ -0.21
CCDC88B-206ENST00000473405 AKAIN1P0CW23 69 aa13.75□□□□□ -0.21
CCDC88B-206ENST00000473405 NPPCP23582 126 aa13.75□□□□□ -0.21
CCDC88B-206ENST00000473405 HTR2BP41595 481 aa13.75□□□□□ -0.21
CCDC88B-206ENST00000473405 RPL11P62913 178 aaKnown RBP13.75□□□□□ -0.21
CCDC88B-206ENST00000473405 IL18Q14116 193 aa13.75□□□□□ -0.21
CCDC88B-206ENST00000473405 CLVS1Q8IUQ0 354 aaPredicted RBP13.75□□□□□ -0.21
CCDC88B-206ENST00000473405 TMEM170AQ8WVE7 144 aa13.75□□□□□ -0.21
CCDC88B-206ENST00000473405 GPR146Q96CH1 333 aa13.75□□□□□ -0.21
CCDC88B-206ENST00000473405 METTL26Q96S19 204 aa13.75□□□□□ -0.21
CCDC88B-206ENST00000473405 RARRES2Q99969 163 aa13.75□□□□□ -0.21
CCDC88B-206ENST00000473405 C11orf68Q9H3H3 251 aaKnown RBP13.75□□□□□ -0.21
CCDC88B-206ENST00000473405 TMEM231Q9H6L2 316 aa13.75□□□□□ -0.21
CCDC88B-206ENST00000473405 CCDC59Q9P031 241 aaKnown RBP13.75□□□□□ -0.21
CCDC88B-206ENST00000473405 GPR132Q9UNW8 380 aa13.75□□□□□ -0.21
CCDC88B-206ENST00000473405 P2RY1P47900 373 aa13.74□□□□□ -0.21
CCDC88B-206ENST00000473405 DHODHQ02127 395 aa13.74□□□□□ -0.21
CCDC88B-206ENST00000473405 C2orf83Q53S99 150 aa13.74□□□□□ -0.21
CCDC88B-206ENST00000473405 TMEM268Q5VZI3 342 aa13.74□□□□□ -0.21
CCDC88B-206ENST00000473405 PRSS54Q6PEW0 395 aa13.74□□□□□ -0.21
CCDC88B-206ENST00000473405 OR51S1Q8NGJ8 323 aa13.74□□□□□ -0.21
CCDC88B-206ENST00000473405 OR11H2Q8NH07 326 aa13.74□□□□□ -0.21
CCDC88B-206ENST00000473405 RAB2BQ8WUD1 216 aa13.74□□□□□ -0.21
CCDC88B-206ENST00000473405 PHLDA1Q8WV24 401 aaPredicted RBP13.74□□□□□ -0.21
CCDC88B-206ENST00000473405 DIRAS2Q96HU8 199 aa13.74□□□□□ -0.21
CCDC88B-206ENST00000473405 HEYLQ9NQ87 328 aaPredicted RBP13.74□□□□□ -0.21
CCDC88B-206ENST00000473405 RABAC1Q9UI14 185 aa13.74□□□□□ -0.21
CCDC88B-206ENST00000473405 TMEM56-RWDD3S4R434 201 aa13.74□□□□□ -0.21
CCDC88B-206ENST00000473405 DNAH10Q8IVF4 4471 aa13.74□□□□□ -0.21
CCDC88B-206ENST00000473405 A0A1W2PS18 150 aa13.73□□□□□ -0.21
CCDC88B-206ENST00000473405 ANKRD20A5PA0PJZ0 165 aa13.73□□□□□ -0.21
CCDC88B-206ENST00000473405 K7EQG2 157 aa13.73□□□□□ -0.21
CCDC88B-206ENST00000473405 IGLC1P0CG04 106 aa13.73□□□□□ -0.21
CCDC88B-206ENST00000473405 SLC24A4Q8NFF2 622 aa13.73□□□□□ -0.21
CCDC88B-206ENST00000473405 TMEM230Q96A57 120 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms