RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 GRAMD2BQ96HH9 432 aa12.96□□□□□ -0.33
COL7A1-206ENST00000466591 ABHD1Q96SE0 405 aa12.96□□□□□ -0.33
COL7A1-206ENST00000466591 RARRES2Q99969 163 aa12.96□□□□□ -0.33
COL7A1-206ENST00000466591 MRPS26Q9BYN8 205 aaKnown RBP12.96□□□□□ -0.33
COL7A1-206ENST00000466591 CEBPZOSA8MTT3 80 aa12.95□□□□□ -0.34
COL7A1-206ENST00000466591 CA1P00915 261 aaPredicted RBP12.95□□□□□ -0.34
COL7A1-206ENST00000466591 OR5AC1P0C628 307 aa12.95□□□□□ -0.34
COL7A1-206ENST00000466591 SSBP1Q04837 148 aaKnown RBP12.95□□□□□ -0.34
COL7A1-206ENST00000466591 FAM219AQ8IW50 185 aa12.95□□□□□ -0.34
COL7A1-206ENST00000466591 STHQ8IWL8 128 aa12.95□□□□□ -0.34
COL7A1-206ENST00000466591 STXBP6Q8NFX7 210 aa12.95□□□□□ -0.34
COL7A1-206ENST00000466591 GATAD1Q8WUU5 269 aa12.95□□□□□ -0.34
COL7A1-206ENST00000466591 MS4A6AQ9H2W1 248 aa12.95□□□□□ -0.34
COL7A1-206ENST00000466591 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.95□□□□□ -0.34
COL7A1-206ENST00000466591 DFFBO76075 338 aa12.94□□□□□ -0.34
COL7A1-206ENST00000466591 TMEM50AO95807 157 aa12.94□□□□□ -0.34
COL7A1-206ENST00000466591 AKAIN1P0CW23 69 aa12.94□□□□□ -0.34
COL7A1-206ENST00000466591 RNASE2P10153 161 aaKnown RBP12.94□□□□□ -0.34
COL7A1-206ENST00000466591 UCP1P25874 307 aa12.94□□□□□ -0.34
COL7A1-206ENST00000466591 HTR2BP41595 481 aa12.94□□□□□ -0.34
COL7A1-206ENST00000466591 DEFB131AP59861 70 aa12.94□□□□□ -0.34
COL7A1-206ENST00000466591 SPCS3P61009 180 aa12.94□□□□□ -0.34
COL7A1-206ENST00000466591 DHODHQ02127 395 aa12.94□□□□□ -0.34
COL7A1-206ENST00000466591 LEMD1Q68G75 181 aa12.94□□□□□ -0.34
COL7A1-206ENST00000466591 FAAP20Q6NZ36 180 aa12.94□□□□□ -0.34
COL7A1-206ENST00000466591 CEMP1Q6PRD7 247 aaPredicted RBP12.94□□□□□ -0.34
COL7A1-206ENST00000466591 DIRAS2Q96HU8 199 aa12.94□□□□□ -0.34
COL7A1-206ENST00000466591 NAA60Q9H7X0 242 aa12.94□□□□□ -0.34
COL7A1-206ENST00000466591 CSMD3Q7Z407 3707 aa12.94□□□□□ -0.34
COL7A1-206ENST00000466591 TRAV30A0A087WSZ9 112 aa12.93□□□□□ -0.34
COL7A1-206ENST00000466591 CLN5O75503 358 aa12.93□□□□□ -0.34
COL7A1-206ENST00000466591 CD74P04233 296 aa12.93□□□□□ -0.34
COL7A1-206ENST00000466591 SMIM18P0DKX4 95 aa12.93□□□□□ -0.34
COL7A1-206ENST00000466591 TMEM268Q5VZI3 342 aa12.93□□□□□ -0.34
COL7A1-206ENST00000466591 CENPSQ8N2Z9 138 aa12.93□□□□□ -0.34
COL7A1-206ENST00000466591 OR11H2Q8NH07 326 aa12.93□□□□□ -0.34
COL7A1-206ENST00000466591 LINC00476Q8WZB0 136 aa12.93□□□□□ -0.34
COL7A1-206ENST00000466591 RBPMSQ93062 196 aaKnown RBP12.93□□□□□ -0.34
COL7A1-206ENST00000466591 PRRT1Q99946 306 aa12.93□□□□□ -0.34
COL7A1-206ENST00000466591 MFFQ9GZY8 342 aa12.93□□□□□ -0.34
COL7A1-206ENST00000466591 TMEM222Q9H0R3 208 aa12.93□□□□□ -0.34
COL7A1-206ENST00000466591 FBXL17Q9UF56 701 aa12.93□□□□□ -0.34
COL7A1-206ENST00000466591 INS-IGF2F8WCM5 200 aa12.92□□□□□ -0.34
COL7A1-206ENST00000466591 APOHP02749 345 aaPredicted RBP12.92□□□□□ -0.34
COL7A1-206ENST00000466591 IFNA4P05014 189 aa12.92□□□□□ -0.34
COL7A1-206ENST00000466591 TMEM187Q14656 261 aa12.92□□□□□ -0.34
COL7A1-206ENST00000466591 FAM90A2PQ658T7 463 aa12.92□□□□□ -0.34
COL7A1-206ENST00000466591 CLVS1Q8IUQ0 354 aaPredicted RBP12.92□□□□□ -0.34
COL7A1-206ENST00000466591 SCGB3A2Q96PL1 93 aa12.92□□□□□ -0.34
COL7A1-206ENST00000466591 VSIRQ9H7M9 311 aa12.92□□□□□ -0.34
COL7A1-206ENST00000466591 MCUBQ9NWR8 336 aa12.92□□□□□ -0.34
COL7A1-206ENST00000466591 RABL2AQ9UBK7 228 aaPredicted RBP12.92□□□□□ -0.34
COL7A1-206ENST00000466591 CACNG5Q9UF02 275 aa12.92□□□□□ -0.34
COL7A1-206ENST00000466591 RABL2BQ9UNT1 228 aa12.92□□□□□ -0.34
COL7A1-206ENST00000466591 KCNIP3Q9Y2W7 256 aa12.92□□□□□ -0.34
COL7A1-206ENST00000466591 A0A1B0GU03 582 aa12.91□□□□□ -0.34
COL7A1-206ENST00000466591 NXPH3O95157 252 aa12.91□□□□□ -0.34
COL7A1-206ENST00000466591 P0C879 139 aa12.91□□□□□ -0.34
COL7A1-206ENST00000466591 EWSR1Q01844 656 aaKnown RBP eCLIP12.91□□□□□ -0.34
COL7A1-206ENST00000466591 SURF2Q15527 256 aaPredicted RBP12.91□□□□□ -0.34
COL7A1-206ENST00000466591 NOXA1Q86UR1 476 aa12.91□□□□□ -0.34
COL7A1-206ENST00000466591 SLC24A4Q8NFF2 622 aa12.91□□□□□ -0.34
COL7A1-206ENST00000466591 OR4X1Q8NH49 305 aa12.91□□□□□ -0.34
COL7A1-206ENST00000466591 Q8WTZ3 238 aa12.91□□□□□ -0.34
COL7A1-206ENST00000466591 SMIM4Q8WVI0 70 aa12.91□□□□□ -0.34
COL7A1-206ENST00000466591 ZFAND3Q9H8U3 227 aa12.91□□□□□ -0.34
COL7A1-206ENST00000466591 CACFD1Q9UGQ2 172 aa12.91□□□□□ -0.34
COL7A1-206ENST00000466591 SCP2D1Q9UJQ7 156 aa12.91□□□□□ -0.34
COL7A1-206ENST00000466591 LYSTQ99698 3801 aa12.9□□□□□ -0.34
COL7A1-206ENST00000466591 TRAV2A0A0B4J234 112 aa12.9□□□□□ -0.34
COL7A1-206ENST00000466591 A0A0G2JRQ6 117 aa12.9□□□□□ -0.34
COL7A1-206ENST00000466591 CTDSP2O14595 271 aa12.9□□□□□ -0.34
COL7A1-206ENST00000466591 CDS2O95674 445 aa12.9□□□□□ -0.34
COL7A1-206ENST00000466591 ATF4P18848 351 aaPredicted RBP12.9□□□□□ -0.34
COL7A1-206ENST00000466591 RPL5P46777 297 aaKnown RBP12.9□□□□□ -0.34
COL7A1-206ENST00000466591 P2RY1P47900 373 aa12.9□□□□□ -0.34
COL7A1-206ENST00000466591 RBMS2Q15434 407 aaKnown RBP12.9□□□□□ -0.34
COL7A1-206ENST00000466591 TIGITQ495A1 244 aa12.9□□□□□ -0.34
COL7A1-206ENST00000466591 ETFRF1Q6IPR1 90 aa12.9□□□□□ -0.34
COL7A1-206ENST00000466591 OR1S2Q8NGQ3 325 aa12.9□□□□□ -0.34
COL7A1-206ENST00000466591 OR52E5Q8NH55 327 aa12.9□□□□□ -0.34
COL7A1-206ENST00000466591 C11orf45Q8TAV5 145 aa12.9□□□□□ -0.34
COL7A1-206ENST00000466591 RAB2BQ8WUD1 216 aa12.9□□□□□ -0.34
COL7A1-206ENST00000466591 PHLDA1Q8WV24 401 aaPredicted RBP12.9□□□□□ -0.34
COL7A1-206ENST00000466591 ZNF414Q96IQ9 312 aa12.9□□□□□ -0.34
COL7A1-206ENST00000466591 MIXL1Q9H2W2 232 aa12.9□□□□□ -0.34
COL7A1-206ENST00000466591 HELTA6NFD8 242 aa12.89□□□□□ -0.35
COL7A1-206ENST00000466591 SLC25A4P12235 298 aa12.89□□□□□ -0.35
COL7A1-206ENST00000466591 RND2P52198 227 aa12.89□□□□□ -0.35
COL7A1-206ENST00000466591 SPCS2Q15005 226 aa12.89□□□□□ -0.35
COL7A1-206ENST00000466591 OR4C16Q8NGL9 310 aa12.89□□□□□ -0.35
COL7A1-206ENST00000466591 CRYM-AS1A6NIL9 109 aa12.88□□□□□ -0.35
COL7A1-206ENST00000466591 IFNA10P01566 189 aa12.88□□□□□ -0.35
COL7A1-206ENST00000466591 ZNF688P0C7X2 276 aa12.88□□□□□ -0.35
COL7A1-206ENST00000466591 SULT1A3P0DMM9 295 aa12.88□□□□□ -0.35
COL7A1-206ENST00000466591 SULT1A4P0DMN0 295 aa12.88□□□□□ -0.35
COL7A1-206ENST00000466591 ANXA3P12429 323 aa12.88□□□□□ -0.35
COL7A1-206ENST00000466591 OR10J1P30954 320 aa12.88□□□□□ -0.35
COL7A1-206ENST00000466591 MLANAQ16655 118 aa12.88□□□□□ -0.35
COL7A1-206ENST00000466591 SELENOHQ8IZQ5 122 aaKnown RBP12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms