RNA–Protein interactions for RNA: ENST00000464454.1

CLK1-208, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 484 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-208ENST00000464454 CMSS1Q9BQ75 279 aaKnown RBP1.33□□□□□ -2.2
CLK1-208ENST00000464454 DDA1Q9BW61 102 aa1.33□□□□□ -2.2
CLK1-208ENST00000464454 DCSTAMPQ9H295 470 aa1.33□□□□□ -2.2
CLK1-208ENST00000464454 C11orf68Q9H3H3 251 aaKnown RBP1.33□□□□□ -2.2
CLK1-208ENST00000464454 IDI2-AS1Q9NZ38 188 aa1.33□□□□□ -2.2
CLK1-208ENST00000464454 GLTPQ9NZD2 209 aa1.33□□□□□ -2.2
CLK1-208ENST00000464454 CKLFQ9UBR5 152 aa1.33□□□□□ -2.2
CLK1-208ENST00000464454 TP73-AS1Q9UF72 201 aa1.33□□□□□ -2.2
CLK1-208ENST00000464454 ARL2BPQ9Y2Y0 163 aa1.33□□□□□ -2.2
CLK1-208ENST00000464454 HEATR5BQ9P2D3 2071 aa1.33□□□□□ -2.2
CLK1-208ENST00000464454 TRAV9-1A0A075B6T8 112 aa1.32□□□□□ -2.2
CLK1-208ENST00000464454 OR4C46A6NHA9 309 aa1.32□□□□□ -2.2
CLK1-208ENST00000464454 MRPS14O60783 128 aaKnown RBP1.32□□□□□ -2.2
CLK1-208ENST00000464454 OR7C1O76099 320 aaPredicted RBP1.32□□□□□ -2.2
CLK1-208ENST00000464454 C1QBP02746 253 aa1.32□□□□□ -2.2
CLK1-208ENST00000464454 UBBP0CG47 229 aa1.32□□□□□ -2.2
CLK1-208ENST00000464454 RPS20P60866 119 aaKnown RBP1.32□□□□□ -2.2
CLK1-208ENST00000464454 RUNX1Q01196 453 aa1.32□□□□□ -2.2
CLK1-208ENST00000464454 POU6F1Q14863 301 aa1.32□□□□□ -2.2
CLK1-208ENST00000464454 TEX36Q5VZQ5 186 aa1.32□□□□□ -2.2
CLK1-208ENST00000464454 TMED4Q7Z7H5 227 aa1.32□□□□□ -2.2
CLK1-208ENST00000464454 TAC4Q86UU9 113 aa1.32□□□□□ -2.2
CLK1-208ENST00000464454 C12orf45Q8N5I9 185 aaPredicted RBP1.32□□□□□ -2.2
CLK1-208ENST00000464454 ZNF439Q8NDP4 499 aa1.32□□□□□ -2.2
CLK1-208ENST00000464454 WFDC11Q8NEX6 87 aa1.32□□□□□ -2.2
CLK1-208ENST00000464454 PFN4Q8NHR9 129 aa1.32□□□□□ -2.2
CLK1-208ENST00000464454 GINS4Q9BRT9 223 aa1.32□□□□□ -2.2
CLK1-208ENST00000464454 ADAT1Q9BUB4 502 aaKnown RBP1.32□□□□□ -2.2
CLK1-208ENST00000464454 TMEM147Q9BVK8 224 aa1.32□□□□□ -2.2
CLK1-208ENST00000464454 PARVBQ9HBI1 364 aa1.32□□□□□ -2.2
CLK1-208ENST00000464454 ARMC1Q9NVT9 282 aa1.32□□□□□ -2.2
CLK1-208ENST00000464454 MED9Q9NWA0 146 aa1.32□□□□□ -2.2
CLK1-208ENST00000464454 HECW2Q9P2P5 1572 aa1.32□□□□□ -2.2
CLK1-208ENST00000464454 INTS1Q8N201 2190 aaKnown RBP1.32□□□□□ -2.2
CLK1-208ENST00000464454 CAMSAP1Q5T5Y3 1602 aa1.32□□□□□ -2.2
CLK1-208ENST00000464454 SETD5Q9C0A6 1442 aa1.32□□□□□ -2.2
CLK1-208ENST00000464454 IGKV2-40A0A087WW87 121 aaPredicted RBP1.31□□□□□ -2.2
CLK1-208ENST00000464454 TRAV26-2A0A0B4J265 109 aa1.31□□□□□ -2.2
CLK1-208ENST00000464454 IGKV3D-7A0A0C4DH55 119 aa1.31□□□□□ -2.2
CLK1-208ENST00000464454 IGKV3OR2-268A0A0C4DH90 116 aa1.31□□□□□ -2.2
CLK1-208ENST00000464454 LOC105371267A0A1B0GV96 52 aa1.31□□□□□ -2.2
CLK1-208ENST00000464454 FUOMA2VDF0 154 aa1.31□□□□□ -2.2
CLK1-208ENST00000464454 FAM159BA6NKW6 160 aa1.31□□□□□ -2.2
CLK1-208ENST00000464454 PIRO00625 290 aa1.31□□□□□ -2.2
CLK1-208ENST00000464454 IGKV2D-40P01614 121 aaPredicted RBP1.31□□□□□ -2.2
CLK1-208ENST00000464454 NBEAP1P0C6P0 100 aa1.31□□□□□ -2.2
CLK1-208ENST00000464454 SPA17Q15506 151 aa1.31□□□□□ -2.2
CLK1-208ENST00000464454 LCN15Q6UWW0 184 aa1.31□□□□□ -2.2
CLK1-208ENST00000464454 UNQ6190/PRO20217Q6UXQ8 127 aa1.31□□□□□ -2.2
CLK1-208ENST00000464454 MIR17HGQ75NE6 70 aa1.31□□□□□ -2.2
CLK1-208ENST00000464454 DEFB128Q7Z7B8 93 aa1.31□□□□□ -2.2
CLK1-208ENST00000464454 AKAP14Q86UN6 197 aa1.31□□□□□ -2.2
CLK1-208ENST00000464454 H1FXQ92522 213 aaKnown RBP1.31□□□□□ -2.2
CLK1-208ENST00000464454 BORCS7Q96B45 105 aa1.31□□□□□ -2.2
CLK1-208ENST00000464454 SELENOSQ9BQE4 189 aa1.31□□□□□ -2.2
CLK1-208ENST00000464454 C20orf27Q9GZN8 174 aa1.31□□□□□ -2.2
CLK1-208ENST00000464454 PRELID3BQ9Y3B1 194 aa1.31□□□□□ -2.2
CLK1-208ENST00000464454 SOX21Q9Y651 276 aaPredicted RBP1.31□□□□□ -2.2
CLK1-208ENST00000464454 HTR1AP08908 422 aa1.3□□□□□ -2.2
CLK1-208ENST00000464454 G0S2P27469 103 aa1.3□□□□□ -2.2
CLK1-208ENST00000464454 CRYBA4P53673 196 aa1.3□□□□□ -2.2
CLK1-208ENST00000464454 HSPE1P61604 102 aaKnown RBP1.3□□□□□ -2.2
CLK1-208ENST00000464454 TFAMQ00059 246 aaKnown RBP1.3□□□□□ -2.2
CLK1-208ENST00000464454 CDK5R1Q15078 307 aa1.3□□□□□ -2.2
CLK1-208ENST00000464454 HACD4Q5VWC8 232 aa1.3□□□□□ -2.2
CLK1-208ENST00000464454 BPIFA4PQ86YQ2 179 aa1.3□□□□□ -2.2
CLK1-208ENST00000464454 CLVS1Q8IUQ0 354 aaPredicted RBP1.3□□□□□ -2.2
CLK1-208ENST00000464454 LINC00471Q8N535 108 aa1.3□□□□□ -2.2
CLK1-208ENST00000464454 SREK1IP1Q8N9Q2 155 aaPredicted RBP1.3□□□□□ -2.2
CLK1-208ENST00000464454 OR52L1Q8NGH7 329 aa1.3□□□□□ -2.2
CLK1-208ENST00000464454 TERB2Q8NHR7 220 aa1.3□□□□□ -2.2
CLK1-208ENST00000464454 TEX47Q8TBZ9 253 aa1.3□□□□□ -2.2
CLK1-208ENST00000464454 NEK7Q8TDX7 302 aa1.3□□□□□ -2.2
CLK1-208ENST00000464454 C10orf105Q8TEF2 133 aa1.3□□□□□ -2.2
CLK1-208ENST00000464454 DNAJC9Q8WXX5 260 aa1.3□□□□□ -2.2
CLK1-208ENST00000464454 DGCR14Q96DF8 476 aaKnown RBP1.3□□□□□ -2.2
CLK1-208ENST00000464454 RNF122Q9H9V4 155 aa1.3□□□□□ -2.2
CLK1-208ENST00000464454 NMNAT1Q9HAN9 279 aaPredicted RBP1.3□□□□□ -2.2
CLK1-208ENST00000464454 SLC39A9Q9NUM3 307 aa1.3□□□□□ -2.2
CLK1-208ENST00000464454 V9GYQ6 96 aa1.3□□□□□ -2.2
CLK1-208ENST00000464454 ANKRD30AQ9BXX3 1397 aa1.3□□□□□ -2.2
CLK1-208ENST00000464454 PIK3C2GO75747 1445 aa1.3□□□□□ -2.2
CLK1-208ENST00000464454 RIC1Q4ADV7 1423 aa1.3□□□□□ -2.2
CLK1-208ENST00000464454 MYOFQ9NZM1 2061 aa1.3□□□□□ -2.2
CLK1-208ENST00000464454 HECW1Q76N89 1606 aa1.29□□□□□ -2.2
CLK1-208ENST00000464454 FAM236DA0A1B0GTK5 79 aa1.29□□□□□ -2.2
CLK1-208ENST00000464454 TMEM212A6NML5 194 aa1.29□□□□□ -2.2
CLK1-208ENST00000464454 CNIH1O95406 144 aa1.29□□□□□ -2.2
CLK1-208ENST00000464454 RBP1P09455 135 aa1.29□□□□□ -2.2
CLK1-208ENST00000464454 SMIM10L2AP0DMW4 78 aa1.29□□□□□ -2.2
CLK1-208ENST00000464454 SMIM10L2BP0DMW5 78 aa1.29□□□□□ -2.2
CLK1-208ENST00000464454 LYNX1P0DP58 116 aa1.29□□□□□ -2.2
CLK1-208ENST00000464454 FAM236CP0DP71 79 aa1.29□□□□□ -2.2
CLK1-208ENST00000464454 IL9P15248 144 aa1.29□□□□□ -2.2
CLK1-208ENST00000464454 G6PCP35575 357 aa1.29□□□□□ -2.2
CLK1-208ENST00000464454 DEFA1P59665 94 aa1.29□□□□□ -2.2
CLK1-208ENST00000464454 RPL19P84098 196 aaKnown RBP1.29□□□□□ -2.2
CLK1-208ENST00000464454 CDK10Q15131 360 aa1.29□□□□□ -2.2
CLK1-208ENST00000464454 ZNF826PQ6ZT77 177 aa1.29□□□□□ -2.2
CLK1-208ENST00000464454 OOSP2Q86WS3 158 aa1.29□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms