RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 CEACAM3P40198 252 aa16.08■□□□□ 0.16
USP39-204ENST00000409766 TAS2R45P59539 299 aa16.08■□□□□ 0.16
USP39-204ENST00000409766 ZNF90Q03938 601 aa16.08■□□□□ 0.16
USP39-204ENST00000409766 ETFRF1Q6IPR1 90 aa16.08■□□□□ 0.16
USP39-204ENST00000409766 OR1P1Q8NH06 330 aa16.08■□□□□ 0.16
USP39-204ENST00000409766 CFHR4Q92496 578 aa16.08■□□□□ 0.16
USP39-204ENST00000409766 MRPL32Q9BYC8 188 aaKnown RBP16.08■□□□□ 0.16
USP39-204ENST00000409766 DNAJC4Q9NNZ3 241 aa16.08■□□□□ 0.16
USP39-204ENST00000409766 HILPDAQ9Y5L2 63 aa16.08■□□□□ 0.16
USP39-204ENST00000409766 RUSC1-AS1Q66K80 236 aa16.07■□□□□ 0.16
USP39-204ENST00000409766 C19orf35Q6ZS72 473 aa16.07■□□□□ 0.16
USP39-204ENST00000409766 LHFPL4Q7Z7J7 247 aa16.07■□□□□ 0.16
USP39-204ENST00000409766 C11orf52Q96A22 123 aa16.07■□□□□ 0.16
USP39-204ENST00000409766 MISP3Q96FF7 219 aa16.07■□□□□ 0.16
USP39-204ENST00000409766 C8orf88P0DMB2 117 aa16.07■□□□□ 0.16
USP39-204ENST00000409766 ZFP36P26651 326 aaKnown RBP16.07■□□□□ 0.16
USP39-204ENST00000409766 EFNA4P52798 201 aa16.07■□□□□ 0.16
USP39-204ENST00000409766 KIR3DL3Q8N743 410 aa16.07■□□□□ 0.16
USP39-204ENST00000409766 RNF2Q99496 336 aa16.07■□□□□ 0.16
USP39-204ENST00000409766 ASH1LQ9NR48 2969 aaKnown RBP16.07■□□□□ 0.16
USP39-204ENST00000409766 OR7C2O60412 319 aa16.06■□□□□ 0.16
USP39-204ENST00000409766 SELENOTP62341 195 aa16.06■□□□□ 0.16
USP39-204ENST00000409766 SRSF12Q8WXF0 261 aaKnown RBP16.06■□□□□ 0.16
USP39-204ENST00000409766 PYGO2Q9BRQ0 406 aa16.06■□□□□ 0.16
USP39-204ENST00000409766 F11RQ9Y624 299 aaKnown RBP16.06■□□□□ 0.16
USP39-204ENST00000409766 GALR1P47211 349 aa16.06■□□□□ 0.16
USP39-204ENST00000409766 PAX2Q02962 417 aa16.06■□□□□ 0.16
USP39-204ENST00000409766 MORN5Q5VZ52 161 aa16.06■□□□□ 0.16
USP39-204ENST00000409766 OR5T1Q8NG75 326 aa16.06■□□□□ 0.16
USP39-204ENST00000409766 FAM167A-AS1Q96KT0 104 aa16.06■□□□□ 0.16
USP39-204ENST00000409766 UHRF2Q96PU4 802 aa16.06■□□□□ 0.16
USP39-204ENST00000409766 CFAP46Q8IYW2 2715 aa16.05■□□□□ 0.16
USP39-204ENST00000409766 IGSF10Q6WRI0 2623 aa16.05■□□□□ 0.16
USP39-204ENST00000409766 PGPEP1LA6NFU8 196 aa16.05■□□□□ 0.16
USP39-204ENST00000409766 AP4M1O00189 453 aa16.05■□□□□ 0.16
USP39-204ENST00000409766 CORTO00230 105 aa16.05■□□□□ 0.16
USP39-204ENST00000409766 TRGC2P03986 189 aa16.05■□□□□ 0.16
USP39-204ENST00000409766 CD99P14209 185 aa16.05■□□□□ 0.16
USP39-204ENST00000409766 FABP9Q0Z7S8 132 aa16.05■□□□□ 0.16
USP39-204ENST00000409766 PATE2Q6UY27 113 aa16.05■□□□□ 0.16
USP39-204ENST00000409766 NECAP1Q8NC96 275 aa16.05■□□□□ 0.16
USP39-204ENST00000409766 TMEM116Q8NCL8 245 aa16.05■□□□□ 0.16
USP39-204ENST00000409766 OR5B12Q96R08 314 aa16.05■□□□□ 0.16
USP39-204ENST00000409766 PFDN5Q99471 154 aa16.05■□□□□ 0.16
USP39-204ENST00000409766 SLC25A2Q9BXI2 301 aa16.05■□□□□ 0.16
USP39-204ENST00000409766 AURKAIP1Q9NWT8 199 aaPredicted RBP16.05■□□□□ 0.16
USP39-204ENST00000409766 PLGLAQ15195 96 aa16.04■□□□□ 0.16
USP39-204ENST00000409766 MMDQ15546 238 aa16.04■□□□□ 0.16
USP39-204ENST00000409766 VMO1Q7Z5L0 202 aa16.04■□□□□ 0.16
USP39-204ENST00000409766 OR1L4Q8NGR5 311 aa16.04■□□□□ 0.16
USP39-204ENST00000409766 ELOVL1Q9BW60 279 aa16.04■□□□□ 0.16
USP39-204ENST00000409766 DMRT1Q9Y5R6 373 aa16.04■□□□□ 0.16
USP39-204ENST00000409766 TGOLN2O43493 480 aa16.04■□□□□ 0.16
USP39-204ENST00000409766 COX7A2P2O60397 106 aa16.04■□□□□ 0.16
USP39-204ENST00000409766 OR10J4P0C629 311 aa16.04■□□□□ 0.16
USP39-204ENST00000409766 OR4X1Q8NH49 305 aa16.04■□□□□ 0.16
USP39-204ENST00000409766 TRAV5A0A0B4J249 113 aa16.03■□□□□ 0.16
USP39-204ENST00000409766 NBR2O15453 112 aa16.03■□□□□ 0.16
USP39-204ENST00000409766 MOSP00540 346 aa16.03■□□□□ 0.16
USP39-204ENST00000409766 S100PP25815 95 aa16.03■□□□□ 0.16
USP39-204ENST00000409766 C10orf113Q5VZT2 155 aa16.03■□□□□ 0.16
USP39-204ENST00000409766 NPBQ8NG41 125 aa16.03■□□□□ 0.16
USP39-204ENST00000409766 IGFBPL1Q8WX77 278 aa16.03■□□□□ 0.16
USP39-204ENST00000409766 SRSF8Q9BRL6 282 aaKnown RBP16.03■□□□□ 0.16
USP39-204ENST00000409766 TNFRSF19Q9NS68 423 aa16.03■□□□□ 0.16
USP39-204ENST00000409766 A0A1W2PRD5 423 aa16.02■□□□□ 0.16
USP39-204ENST00000409766 A0A1W2PRF3 423 aa16.02■□□□□ 0.16
USP39-204ENST00000409766 A0A1W2PRM7 423 aa16.02■□□□□ 0.16
USP39-204ENST00000409766 NDUFA3O95167 84 aa16.02■□□□□ 0.16
USP39-204ENST00000409766 LGALS4P56470 323 aa16.02■□□□□ 0.16
USP39-204ENST00000409766 OCC1Q8TAD7 63 aa16.02■□□□□ 0.16
USP39-204ENST00000409766 TRGV9Q99603 122 aa16.02■□□□□ 0.16
USP39-204ENST00000409766 CD24P25063 80 aa16.02■□□□□ 0.15
USP39-204ENST00000409766 BPIFB3P59826 476 aa16.02■□□□□ 0.15
USP39-204ENST00000409766 C22orf15Q8WYQ4 148 aa16.02■□□□□ 0.15
USP39-204ENST00000409766 EAF1Q96JC9 268 aaPredicted RBP16.02■□□□□ 0.15
USP39-204ENST00000409766 ZNF355PQ9NSJ1 428 aa16.02■□□□□ 0.15
USP39-204ENST00000409766 USP24Q9UPU5 2620 aa16.02■□□□□ 0.15
USP39-204ENST00000409766 A0A1W2PRE2 83 aa16.01■□□□□ 0.15
USP39-204ENST00000409766 GGTLC3B5MD39 225 aa16.01■□□□□ 0.15
USP39-204ENST00000409766 PHOX2AO14813 284 aa16.01■□□□□ 0.15
USP39-204ENST00000409766 HIST1H2BKO60814 126 aa16.01■□□□□ 0.15
USP39-204ENST00000409766 HIST1H2BJP06899 126 aa16.01■□□□□ 0.15
USP39-204ENST00000409766 HOXB4P17483 251 aaPredicted RBP16.01■□□□□ 0.15
USP39-204ENST00000409766 HIST1H2BOP23527 126 aa16.01■□□□□ 0.15
USP39-204ENST00000409766 HIST1H2BBP33778 126 aa16.01■□□□□ 0.15
USP39-204ENST00000409766 SRP14P37108 136 aaKnown RBP16.01■□□□□ 0.15
USP39-204ENST00000409766 HIST1H2BDP58876 126 aa16.01■□□□□ 0.15
USP39-204ENST00000409766 HIST1H2BCP62807 126 aa16.01■□□□□ 0.15
USP39-204ENST00000409766 SSX2Q16385 188 aa16.01■□□□□ 0.15
USP39-204ENST00000409766 HIST2H2BEQ16778 126 aa16.01■□□□□ 0.15
USP39-204ENST00000409766 HIST2H2BFQ5QNW6 126 aaPredicted RBP16.01■□□□□ 0.15
USP39-204ENST00000409766 OR5AU1Q8NGC0 362 aa16.01■□□□□ 0.15
USP39-204ENST00000409766 HIST1H2BHQ93079 126 aa16.01■□□□□ 0.15
USP39-204ENST00000409766 HIST1H2BNQ99877 126 aa16.01■□□□□ 0.15
USP39-204ENST00000409766 HIST1H2BMQ99879 126 aa16.01■□□□□ 0.15
USP39-204ENST00000409766 SIRPDQ9H106 197 aa16.01■□□□□ 0.15
USP39-204ENST00000409766 C9JCJ5 164 aa16.01■□□□□ 0.15
USP39-204ENST00000409766 OVOL3O00110 214 aa16.01■□□□□ 0.15
USP39-204ENST00000409766 CNIH1O95406 144 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms