RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 ARID1BQ8NFD5 2236 aaPredicted RBP6.1□□□□□ -1.43
SCN9A-202ENST00000409435 PLXNA4Q9HCM2 1894 aa6.1□□□□□ -1.43
SCN9A-202ENST00000409435 VWC2LB2RUY7 222 aa6.1□□□□□ -1.43
SCN9A-202ENST00000409435 H3BRM9 83 aa6.1□□□□□ -1.43
SCN9A-202ENST00000409435 NHLRC3Q5JS37 347 aa6.1□□□□□ -1.43
SCN9A-202ENST00000409435 DTX2Q86UW9 622 aa6.1□□□□□ -1.43
SCN9A-202ENST00000409435 MYO7BQ6PIF6 2116 aa6.1□□□□□ -1.43
SCN9A-202ENST00000409435 SUMO2P61956 95 aaKnown RBP6.09□□□□□ -1.43
SCN9A-202ENST00000409435 DRAM1Q8N682 238 aa6.09□□□□□ -1.43
SCN9A-202ENST00000409435 TMEM56-RWDD3S4R434 201 aa6.09□□□□□ -1.43
SCN9A-202ENST00000409435 GAGE12BA1L429 117 aa6.09□□□□□ -1.43
SCN9A-202ENST00000409435 CD5LO43866 347 aa6.09□□□□□ -1.43
SCN9A-202ENST00000409435 TNFSF13O75888 250 aa6.09□□□□□ -1.43
SCN9A-202ENST00000409435 ACP7Q6ZNF0 438 aa6.09□□□□□ -1.43
SCN9A-202ENST00000409435 ANKRD29Q8N6D5 301 aa6.09□□□□□ -1.43
SCN9A-202ENST00000409435 SVIPQ8NHG7 77 aa6.09□□□□□ -1.43
SCN9A-202ENST00000409435 TRBV20-1A0A075B6N2 111 aa6.09□□□□□ -1.43
SCN9A-202ENST00000409435 A0A087WWC5 75 aa6.09□□□□□ -1.43
SCN9A-202ENST00000409435 IGHV1-69DA0A0B4J2H0 117 aa6.09□□□□□ -1.43
SCN9A-202ENST00000409435 TMEM178BH3BS89 294 aa6.09□□□□□ -1.43
SCN9A-202ENST00000409435 PLA2G10O15496 165 aa6.09□□□□□ -1.43
SCN9A-202ENST00000409435 IGHV1-69P01742 117 aa6.09□□□□□ -1.43
SCN9A-202ENST00000409435 APOC4P55056 127 aa6.09□□□□□ -1.43
SCN9A-202ENST00000409435 TMEM177Q53S58 311 aa6.09□□□□□ -1.43
SCN9A-202ENST00000409435 PRSS57Q6UWY2 283 aa6.09□□□□□ -1.43
SCN9A-202ENST00000409435 FLVCR1-AS1Q8TAF5 88 aa6.09□□□□□ -1.43
SCN9A-202ENST00000409435 JPT1Q9UK76 154 aa6.09□□□□□ -1.43
SCN9A-202ENST00000409435 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.09□□□□□ -1.43
SCN9A-202ENST00000409435 WNT5AP41221 380 aa6.09□□□□□ -1.43
SCN9A-202ENST00000409435 C1orf122Q6ZSJ8 110 aa6.09□□□□□ -1.43
SCN9A-202ENST00000409435 GOLT1AQ6ZVE7 132 aa6.09□□□□□ -1.43
SCN9A-202ENST00000409435 PIP4P2Q8N4L2 257 aa6.09□□□□□ -1.43
SCN9A-202ENST00000409435 FBLIM1Q8WUP2 373 aa6.09□□□□□ -1.43
SCN9A-202ENST00000409435 TMEM133Q9H2Q1 129 aa6.09□□□□□ -1.43
SCN9A-202ENST00000409435 FBXL7Q9UJT9 491 aa6.09□□□□□ -1.43
SCN9A-202ENST00000409435 IGLV3-32A0A0A0MS00 114 aa6.09□□□□□ -1.44
SCN9A-202ENST00000409435 PRSS47A8MTI9 375 aa6.09□□□□□ -1.44
SCN9A-202ENST00000409435 RND3P61587 244 aa6.09□□□□□ -1.44
SCN9A-202ENST00000409435 RPL8P62917 257 aaKnown RBP6.09□□□□□ -1.44
SCN9A-202ENST00000409435 MBNL2Q5VZF2 373 aaKnown RBP6.09□□□□□ -1.44
SCN9A-202ENST00000409435 RASL11AQ6T310 242 aa6.09□□□□□ -1.44
SCN9A-202ENST00000409435 PQLC2Q6ZP29 291 aa6.09□□□□□ -1.44
SCN9A-202ENST00000409435 OR9G4Q8NGQ1 327 aa6.09□□□□□ -1.44
SCN9A-202ENST00000409435 RNASEH2CQ8TDP1 164 aaKnown RBP6.09□□□□□ -1.44
SCN9A-202ENST00000409435 DLX4Q92988 240 aaPredicted RBP6.09□□□□□ -1.44
SCN9A-202ENST00000409435 HIGD1AQ9Y241 93 aa6.09□□□□□ -1.44
SCN9A-202ENST00000409435 GAGE12JA6NER3 117 aa6.08□□□□□ -1.44
SCN9A-202ENST00000409435 RPL36A-HNRNPH2H7BZ11 118 aa6.08□□□□□ -1.44
SCN9A-202ENST00000409435 MLNRO43193 412 aa6.08□□□□□ -1.44
SCN9A-202ENST00000409435 GAGE7O76087 117 aa6.08□□□□□ -1.44
SCN9A-202ENST00000409435 GAGE12FP0CL80 117 aa6.08□□□□□ -1.44
SCN9A-202ENST00000409435 GAGE12GP0CL81 117 aa6.08□□□□□ -1.44
SCN9A-202ENST00000409435 GAGE12IP0CL82 117 aa6.08□□□□□ -1.44
SCN9A-202ENST00000409435 CBLN1P23435 193 aa6.08□□□□□ -1.44
SCN9A-202ENST00000409435 GAGE4Q13068 117 aa6.08□□□□□ -1.44
SCN9A-202ENST00000409435 RUSC1-AS1Q66K80 236 aa6.08□□□□□ -1.44
SCN9A-202ENST00000409435 OR4D11Q8NGI4 311 aa6.08□□□□□ -1.44
SCN9A-202ENST00000409435 OR5P3Q8WZ94 311 aa6.08□□□□□ -1.44
SCN9A-202ENST00000409435 FOXA2Q9Y261 457 aaPredicted RBP6.08□□□□□ -1.44
SCN9A-202ENST00000409435 TRAV41A0A0B4J266 112 aa6.08□□□□□ -1.44
SCN9A-202ENST00000409435 TGFBR3LH3BV60 316 aa6.08□□□□□ -1.44
SCN9A-202ENST00000409435 IGKV3-20P01619 116 aa6.08□□□□□ -1.44
SCN9A-202ENST00000409435 CNTFRP26992 372 aa6.08□□□□□ -1.44
SCN9A-202ENST00000409435 GAGE5Q13069 117 aa6.08□□□□□ -1.44
SCN9A-202ENST00000409435 GAGE6Q13070 117 aa6.08□□□□□ -1.44
SCN9A-202ENST00000409435 C9orf66Q5T8R8 295 aa6.08□□□□□ -1.44
SCN9A-202ENST00000409435 MESP1Q9BRJ9 268 aa6.08□□□□□ -1.44
SCN9A-202ENST00000409435 KLK15Q9H2R5 256 aa6.08□□□□□ -1.44
SCN9A-202ENST00000409435 TSSC4Q9Y5U2 329 aaPredicted RBP6.08□□□□□ -1.44
SCN9A-202ENST00000409435 PSG1P11464 419 aa6.08□□□□□ -1.44
SCN9A-202ENST00000409435 PSG2P11465 335 aa6.08□□□□□ -1.44
SCN9A-202ENST00000409435 LEAP2Q969E1 77 aa6.08□□□□□ -1.44
SCN9A-202ENST00000409435 NRN1Q9NPD7 142 aa6.08□□□□□ -1.44
SCN9A-202ENST00000409435 OOSP1A8MZH6 123 aa6.08□□□□□ -1.44
SCN9A-202ENST00000409435 FCN3O75636 299 aa6.08□□□□□ -1.44
SCN9A-202ENST00000409435 ANOS1P23352 680 aa6.08□□□□□ -1.44
SCN9A-202ENST00000409435 LINC01587Q99440 93 aa6.08□□□□□ -1.44
SCN9A-202ENST00000409435 SS18L2Q9UHA2 77 aa6.08□□□□□ -1.44
SCN9A-202ENST00000409435 ERG28Q9UKR5 140 aa6.08□□□□□ -1.44
SCN9A-202ENST00000409435 MTCL1Q9Y4B5 1905 aaKnown RBP6.08□□□□□ -1.44
SCN9A-202ENST00000409435 TRGV2A0A075B6R0 118 aa6.08□□□□□ -1.44
SCN9A-202ENST00000409435 IGKV3D-15A0A087WSY6 115 aa6.08□□□□□ -1.44
SCN9A-202ENST00000409435 PRB3Q04118 309 aaPredicted RBP6.08□□□□□ -1.44
SCN9A-202ENST00000409435 PIGYQ3MUY2 71 aa6.08□□□□□ -1.44
SCN9A-202ENST00000409435 TMEM78Q5T7P6 136 aa6.08□□□□□ -1.44
SCN9A-202ENST00000409435 HCP5Q6MZN7 132 aa6.08□□□□□ -1.44
SCN9A-202ENST00000409435 GPR82Q96P67 336 aa6.08□□□□□ -1.44
SCN9A-202ENST00000409435 NABP2Q9BQ15 211 aa6.08□□□□□ -1.44
SCN9A-202ENST00000409435 CST9LQ9H4G1 147 aa6.08□□□□□ -1.44
SCN9A-202ENST00000409435 IGHV4-30-2A0A087WSY4 118 aa6.07□□□□□ -1.44
SCN9A-202ENST00000409435 NBR2O15453 112 aa6.07□□□□□ -1.44
SCN9A-202ENST00000409435 RPL35AP18077 110 aaKnown RBP6.07□□□□□ -1.44
SCN9A-202ENST00000409435 ASPHD2Q6ICH7 369 aa6.07□□□□□ -1.44
SCN9A-202ENST00000409435 IGFL2Q6UWQ7 119 aa6.07□□□□□ -1.44
SCN9A-202ENST00000409435 ABHD14BQ96IU4 210 aa6.07□□□□□ -1.44
SCN9A-202ENST00000409435 PDCD11Q14690 1871 aaKnown RBP6.07□□□□□ -1.44
SCN9A-202ENST00000409435 APOHP02749 345 aaPredicted RBP6.07□□□□□ -1.44
SCN9A-202ENST00000409435 ZFP36P26651 326 aaKnown RBP6.07□□□□□ -1.44
SCN9A-202ENST00000409435 CLEC19AQ6UXS0 136 aa6.07□□□□□ -1.44
SCN9A-202ENST00000409435 SPSB4Q96A44 273 aa6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 98.5 ms