RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 CFAP161Q6P656 301 aa11.02□□□□□ -0.65
CCDC88C-201ENST00000331194 OR1N2Q8NGR9 330 aa11.02□□□□□ -0.65
CCDC88C-201ENST00000331194 FZR1Q9UM11 496 aa11.02□□□□□ -0.65
CCDC88C-201ENST00000331194 ZNF318Q5VUA4 2279 aa11.01□□□□□ -0.65
CCDC88C-201ENST00000331194 GABRA6Q16445 453 aa11.01□□□□□ -0.65
CCDC88C-201ENST00000331194 SAMD13Q5VXD3 122 aa11.01□□□□□ -0.65
CCDC88C-201ENST00000331194 C1orf210Q8IVY1 113 aa11.01□□□□□ -0.65
CCDC88C-201ENST00000331194 LOXL2Q9Y4K0 774 aa11.01□□□□□ -0.65
CCDC88C-201ENST00000331194 CEP295Q9C0D2 2601 aa11.01□□□□□ -0.65
CCDC88C-201ENST00000331194 HIGD1CA8MV81 97 aa11.01□□□□□ -0.65
CCDC88C-201ENST00000331194 NRN1LQ496H8 165 aa11.01□□□□□ -0.65
CCDC88C-201ENST00000331194 PMS2CLQ68D20 193 aa11.01□□□□□ -0.65
CCDC88C-201ENST00000331194 SLC25A34Q6PIV7 304 aa11.01□□□□□ -0.65
CCDC88C-201ENST00000331194 SSX8Q7RTT4 187 aa11.01□□□□□ -0.65
CCDC88C-201ENST00000331194 TCF24Q7RTU0 167 aa11.01□□□□□ -0.65
CCDC88C-201ENST00000331194 FNDC4Q9H6D8 234 aaPredicted RBP11.01□□□□□ -0.65
CCDC88C-201ENST00000331194 OBP2BQ9NPH6 170 aa11.01□□□□□ -0.65
CCDC88C-201ENST00000331194 PILRBQ9UKJ0 227 aa11.01□□□□□ -0.65
CCDC88C-201ENST00000331194 UQCRFS1P47985 274 aa11□□□□□ -0.65
CCDC88C-201ENST00000331194 ZNF766Q5HY98 468 aa11□□□□□ -0.65
CCDC88C-201ENST00000331194 TRIB1Q96RU8 372 aa11□□□□□ -0.65
CCDC88C-201ENST00000331194 SAP30LQ9HAJ7 183 aa11□□□□□ -0.65
CCDC88C-201ENST00000331194 GNG12Q9UBI6 72 aa11□□□□□ -0.65
CCDC88C-201ENST00000331194 C21orf140B9A014 251 aa11□□□□□ -0.65
CCDC88C-201ENST00000331194 SYS1-DBNDD2H3BUS1 97 aa11□□□□□ -0.65
CCDC88C-201ENST00000331194 LINC00696Q6ZRV3 163 aa11□□□□□ -0.65
CCDC88C-201ENST00000331194 OR9G1Q8NH87 305 aa11□□□□□ -0.65
CCDC88C-201ENST00000331194 SAP25Q8TEE9 199 aa11□□□□□ -0.65
CCDC88C-201ENST00000331194 TMEM186Q96B77 213 aa11□□□□□ -0.65
CCDC88C-201ENST00000331194 KLF13Q9Y2Y9 288 aaPredicted RBP11□□□□□ -0.65
CCDC88C-201ENST00000331194 PPIAL4DF5H284 164 aa11□□□□□ -0.65
CCDC88C-201ENST00000331194 PYYP10082 97 aa11□□□□□ -0.65
CCDC88C-201ENST00000331194 ZNF137PP52743 207 aa11□□□□□ -0.65
CCDC88C-201ENST00000331194 COX19Q49B96 90 aa11□□□□□ -0.65
CCDC88C-201ENST00000331194 Q8IYB0 196 aa11□□□□□ -0.65
CCDC88C-201ENST00000331194 UBALD2Q8IYN6 164 aa11□□□□□ -0.65
CCDC88C-201ENST00000331194 LINC00470Q9BZP3 86 aa11□□□□□ -0.65
CCDC88C-201ENST00000331194 CADP27708 2225 aa10.99□□□□□ -0.65
CCDC88C-201ENST00000331194 PIEZO2Q9H5I5 2752 aa10.99□□□□□ -0.65
CCDC88C-201ENST00000331194 IGKV3D-15A0A087WSY6 115 aa10.99□□□□□ -0.65
CCDC88C-201ENST00000331194 IGHV1-24A0A0C4DH33 117 aa10.99□□□□□ -0.65
CCDC88C-201ENST00000331194 IGHV3-48P01763 117 aa10.99□□□□□ -0.65
CCDC88C-201ENST00000331194 MPV17P39210 176 aa10.99□□□□□ -0.65
CCDC88C-201ENST00000331194 ERVK-16P61578 105 aa10.99□□□□□ -0.65
CCDC88C-201ENST00000331194 RAB31Q13636 194 aa10.99□□□□□ -0.65
CCDC88C-201ENST00000331194 SLC25A40Q8TBP6 338 aa10.99□□□□□ -0.65
CCDC88C-201ENST00000331194 MBD6Q96DN6 1003 aa10.99□□□□□ -0.65
CCDC88C-201ENST00000331194 TMEM167BQ9NRX6 74 aa10.99□□□□□ -0.65
CCDC88C-201ENST00000331194 OTOGLQ3ZCN5 2332 aa10.99□□□□□ -0.65
CCDC88C-201ENST00000331194 PLXNB1O43157 2135 aa10.99□□□□□ -0.65
CCDC88C-201ENST00000331194 LGALS7P47929 136 aa10.99□□□□□ -0.65
CCDC88C-201ENST00000331194 GNG5P63218 68 aa10.99□□□□□ -0.65
CCDC88C-201ENST00000331194 C11orf53Q8IXP5 236 aa10.99□□□□□ -0.65
CCDC88C-201ENST00000331194 ARRDC1-AS1Q9H2J1 176 aa10.99□□□□□ -0.65
CCDC88C-201ENST00000331194 DUSP13Q9UII6 198 aa10.99□□□□□ -0.65
CCDC88C-201ENST00000331194 NAV3Q8IVL0 2385 aa10.98□□□□□ -0.65
CCDC88C-201ENST00000331194 MAGEA5P43359 124 aa10.98□□□□□ -0.65
CCDC88C-201ENST00000331194 MED13Q9UHV7 2174 aa10.98□□□□□ -0.65
CCDC88C-201ENST00000331194 TANC2Q9HCD6 1990 aa10.98□□□□□ -0.65
CCDC88C-201ENST00000331194 ZNF292O60281 2723 aa10.98□□□□□ -0.65
CCDC88C-201ENST00000331194 AKAP13Q12802 2813 aa10.98□□□□□ -0.65
CCDC88C-201ENST00000331194 PRB4P10163 310 aaPredicted RBP10.98□□□□□ -0.65
CCDC88C-201ENST00000331194 KLF5Q13887 457 aaPredicted RBP10.98□□□□□ -0.65
CCDC88C-201ENST00000331194 ST20Q9HBF5 79 aa10.98□□□□□ -0.65
CCDC88C-201ENST00000331194 ZNF835Q9Y2P0 537 aa10.98□□□□□ -0.65
CCDC88C-201ENST00000331194 FAM231BA6NCW3 169 aa10.98□□□□□ -0.65
CCDC88C-201ENST00000331194 LEPROTL1O95214 131 aa10.98□□□□□ -0.65
CCDC88C-201ENST00000331194 PRSS57Q6UWY2 283 aa10.98□□□□□ -0.65
CCDC88C-201ENST00000331194 CT55Q8WUE5 264 aa10.98□□□□□ -0.65
CCDC88C-201ENST00000331194 CHRDL1Q9BU40 450 aa10.98□□□□□ -0.65
CCDC88C-201ENST00000331194 C15orf65H3BRN8 121 aa10.97□□□□□ -0.65
CCDC88C-201ENST00000331194 S1PR3Q99500 378 aa10.97□□□□□ -0.65
CCDC88C-201ENST00000331194 COMMD5Q9GZQ3 224 aa10.97□□□□□ -0.65
CCDC88C-201ENST00000331194 KLK10O43240 276 aa10.97□□□□□ -0.65
CCDC88C-201ENST00000331194 KALRNO60229 2985 aa10.97□□□□□ -0.65
CCDC88C-201ENST00000331194 PLAUP00749 431 aa10.97□□□□□ -0.65
CCDC88C-201ENST00000331194 CSN3P07498 182 aa10.97□□□□□ -0.65
CCDC88C-201ENST00000331194 IGLC1P0CG04 106 aa10.97□□□□□ -0.65
CCDC88C-201ENST00000331194 CYB561P49447 251 aa10.97□□□□□ -0.65
CCDC88C-201ENST00000331194 PAX2Q02962 417 aa10.97□□□□□ -0.65
CCDC88C-201ENST00000331194 RBPJQ06330 500 aa10.97□□□□□ -0.65
CCDC88C-201ENST00000331194 WDR31Q8NA23 367 aa10.97□□□□□ -0.65
CCDC88C-201ENST00000331194 FER1L6-AS1Q8NA97 138 aa10.97□□□□□ -0.65
CCDC88C-201ENST00000331194 SCRT2Q9NQ03 307 aa10.97□□□□□ -0.65
CCDC88C-201ENST00000331194 C7orf71A4D174 169 aa10.96□□□□□ -0.65
CCDC88C-201ENST00000331194 C19orf67A6NJJ6 358 aa10.96□□□□□ -0.65
CCDC88C-201ENST00000331194 ACP7Q6ZNF0 438 aa10.96□□□□□ -0.65
CCDC88C-201ENST00000331194 OR1B1Q8NGR6 318 aa10.96□□□□□ -0.65
CCDC88C-201ENST00000331194 AMMECR1Q9Y4X0 333 aaPredicted RBP10.96□□□□□ -0.65
CCDC88C-201ENST00000331194 SPINT2O43291 252 aa10.96□□□□□ -0.66
CCDC88C-201ENST00000331194 APOBEC3AP31941 199 aaPredicted RBP10.96□□□□□ -0.66
CCDC88C-201ENST00000331194 FOLR3P41439 243 aa10.96□□□□□ -0.66
CCDC88C-201ENST00000331194 RPS20P60866 119 aaKnown RBP10.96□□□□□ -0.66
CCDC88C-201ENST00000331194 UBE2L3P68036 154 aaKnown RBP10.96□□□□□ -0.66
CCDC88C-201ENST00000331194 SSBP2P81877 361 aaPredicted RBP10.96□□□□□ -0.66
CCDC88C-201ENST00000331194 FAM71F2Q6NXP2 309 aa10.96□□□□□ -0.66
CCDC88C-201ENST00000331194 LINC00322Q6ZN03 302 aaPredicted RBP10.96□□□□□ -0.66
CCDC88C-201ENST00000331194 TEX45Q8NA69 505 aa10.96□□□□□ -0.66
CCDC88C-201ENST00000331194 SLC25A10Q9UBX3 287 aaPredicted RBP10.96□□□□□ -0.66
CCDC88C-201ENST00000331194 GAGE10A6NGK3 116 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms