RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 WFDC3Q8IUB2 231 aa14.44□□□□□ -0.1
LIME1-201ENST00000309546 KIR2DL5AQ8N109 375 aa14.44□□□□□ -0.1
LIME1-201ENST00000309546 KIR2DL5BQ8NHK3 375 aa14.44□□□□□ -0.1
LIME1-201ENST00000309546 LHFPL5Q8TAF8 219 aa14.44□□□□□ -0.1
LIME1-201ENST00000309546 ST8SIA2Q92186 375 aa14.44□□□□□ -0.1
LIME1-201ENST00000309546 ZFAND3Q9H8U3 227 aa14.44□□□□□ -0.1
LIME1-201ENST00000309546 CXorf65A6NEN9 183 aa14.43□□□□□ -0.1
LIME1-201ENST00000309546 NOL3O60936 208 aaKnown RBP14.43□□□□□ -0.1
LIME1-201ENST00000309546 CDS2O95674 445 aa14.43□□□□□ -0.1
LIME1-201ENST00000309546 TMEM50AO95807 157 aa14.43□□□□□ -0.1
LIME1-201ENST00000309546 APOHP02749 345 aaPredicted RBP14.43□□□□□ -0.1
LIME1-201ENST00000309546 PAFAH1B2P68402 229 aa14.43□□□□□ -0.1
LIME1-201ENST00000309546 SURF2Q15527 256 aaPredicted RBP14.43□□□□□ -0.1
LIME1-201ENST00000309546 TMEM268Q5VZI3 342 aa14.43□□□□□ -0.1
LIME1-201ENST00000309546 FAM90A2PQ658T7 463 aa14.43□□□□□ -0.1
LIME1-201ENST00000309546 FAM219AQ8IW50 185 aa14.43□□□□□ -0.1
LIME1-201ENST00000309546 DYNC2LI1Q8TCX1 351 aa14.43□□□□□ -0.1
LIME1-201ENST00000309546 GLYATL2Q8WU03 294 aa14.43□□□□□ -0.1
LIME1-201ENST00000309546 RBPMSQ93062 196 aaKnown RBP14.43□□□□□ -0.1
LIME1-201ENST00000309546 FNDC4Q9H6D8 234 aaPredicted RBP14.43□□□□□ -0.1
LIME1-201ENST00000309546 MAP6D1Q9H9H5 199 aa14.43□□□□□ -0.1
LIME1-201ENST00000309546 MRPL36Q9P0J6 103 aaKnown RBP14.43□□□□□ -0.1
LIME1-201ENST00000309546 CACNG5Q9UF02 275 aa14.43□□□□□ -0.1
LIME1-201ENST00000309546 ALMS1Q8TCU4 4167 aa14.42□□□□□ -0.1
LIME1-201ENST00000309546 A0A1B0GU03 582 aa14.42□□□□□ -0.1
LIME1-201ENST00000309546 CTDSPLO15194 276 aa14.42□□□□□ -0.1
LIME1-201ENST00000309546 CMC4P56277 68 aaPredicted RBP14.42□□□□□ -0.1
LIME1-201ENST00000309546 SPCS3P61009 180 aa14.42□□□□□ -0.1
LIME1-201ENST00000309546 RPL11P62913 178 aaKnown RBP14.42□□□□□ -0.1
LIME1-201ENST00000309546 DHODHQ02127 395 aa14.42□□□□□ -0.1
LIME1-201ENST00000309546 MLANAQ16655 118 aa14.42□□□□□ -0.1
LIME1-201ENST00000309546 PVRIGQ6DKI7 326 aa14.42□□□□□ -0.1
LIME1-201ENST00000309546 SELENOHQ8IZQ5 122 aaKnown RBP14.42□□□□□ -0.1
LIME1-201ENST00000309546 OR51S1Q8NGJ8 323 aa14.42□□□□□ -0.1
LIME1-201ENST00000309546 RNF183Q96D59 192 aa14.42□□□□□ -0.1
LIME1-201ENST00000309546 PRRT1Q99946 306 aa14.42□□□□□ -0.1
LIME1-201ENST00000309546 CTNNBIP1Q9NSA3 81 aaPredicted RBP14.42□□□□□ -0.1
LIME1-201ENST00000309546 PLECQ15149 4684 aaKnown RBP14.42□□□□□ -0.1
LIME1-201ENST00000309546 CRYM-AS1A6NIL9 109 aa14.41□□□□□ -0.1
LIME1-201ENST00000309546 DNASE2O00115 360 aaPredicted RBP14.41□□□□□ -0.1
LIME1-201ENST00000309546 CLN5O75503 358 aa14.41□□□□□ -0.1
LIME1-201ENST00000309546 SCGB2A1O75556 95 aa14.41□□□□□ -0.1
LIME1-201ENST00000309546 NXPH3O95157 252 aa14.41□□□□□ -0.1
LIME1-201ENST00000309546 TMBIM6P55061 237 aa14.41□□□□□ -0.1
LIME1-201ENST00000309546 EWSR1Q01844 656 aaKnown RBP eCLIP14.41□□□□□ -0.1
LIME1-201ENST00000309546 LILRB2Q8N423 598 aa14.41□□□□□ -0.1
LIME1-201ENST00000309546 VSIRQ9H7M9 311 aa14.41□□□□□ -0.1
LIME1-201ENST00000309546 HEYLQ9NQ87 328 aaPredicted RBP14.41□□□□□ -0.1
LIME1-201ENST00000309546 RABL2AQ9UBK7 228 aaPredicted RBP14.41□□□□□ -0.1
LIME1-201ENST00000309546 RABL2BQ9UNT1 228 aa14.41□□□□□ -0.1
LIME1-201ENST00000309546 GPR132Q9UNW8 380 aa14.41□□□□□ -0.1
LIME1-201ENST00000309546 DFFBO76075 338 aa14.4□□□□□ -0.1
LIME1-201ENST00000309546 CD5P06127 495 aa14.4□□□□□ -0.1
LIME1-201ENST00000309546 TNFRSF9Q07011 255 aa14.4□□□□□ -0.1
LIME1-201ENST00000309546 OR4X1Q8NH49 305 aa14.4□□□□□ -0.1
LIME1-201ENST00000309546 TMEM230Q96A57 120 aa14.4□□□□□ -0.1
LIME1-201ENST00000309546 GPR146Q96CH1 333 aa14.4□□□□□ -0.1
LIME1-201ENST00000309546 BCL7BQ9BQE9 202 aa14.4□□□□□ -0.1
LIME1-201ENST00000309546 MS4A6AQ9H2W1 248 aa14.4□□□□□ -0.1
LIME1-201ENST00000309546 TMEM231Q9H6L2 316 aa14.4□□□□□ -0.1
LIME1-201ENST00000309546 MCUBQ9NWR8 336 aa14.4□□□□□ -0.1
LIME1-201ENST00000309546 PRR13Q9NZ81 148 aa14.4□□□□□ -0.1
LIME1-201ENST00000309546 CEBPZOSA8MTT3 80 aa14.39□□□□□ -0.11
LIME1-201ENST00000309546 NPPCP23582 126 aa14.39□□□□□ -0.11
LIME1-201ENST00000309546 HTR2BP41595 481 aa14.39□□□□□ -0.11
LIME1-201ENST00000309546 RPL5P46777 297 aaKnown RBP14.39□□□□□ -0.11
LIME1-201ENST00000309546 BSXQ3C1V8 233 aa14.39□□□□□ -0.11
LIME1-201ENST00000309546 TIGITQ495A1 244 aa14.39□□□□□ -0.11
LIME1-201ENST00000309546 OR52E5Q8NH55 327 aa14.39□□□□□ -0.11
LIME1-201ENST00000309546 METTL26Q96S19 204 aa14.39□□□□□ -0.11
LIME1-201ENST00000309546 RSL24D1Q9UHA3 163 aaKnown RBP14.39□□□□□ -0.11
LIME1-201ENST00000309546 RABAC1Q9UI14 185 aa14.39□□□□□ -0.11
LIME1-201ENST00000309546 RPS10-NUDT3A0A1W2PQS6 291 aa14.38□□□□□ -0.11
LIME1-201ENST00000309546 ANKRD20A5PA0PJZ0 165 aa14.38□□□□□ -0.11
LIME1-201ENST00000309546 GSTZ1O43708 216 aaPredicted RBP14.38□□□□□ -0.11
LIME1-201ENST00000309546 AARDQ4LEZ3 155 aa14.38□□□□□ -0.11
LIME1-201ENST00000309546 LEMD1Q68G75 181 aa14.38□□□□□ -0.11
LIME1-201ENST00000309546 SLC24A4Q8NFF2 622 aa14.38□□□□□ -0.11
LIME1-201ENST00000309546 CSTL1Q9H114 145 aa14.38□□□□□ -0.11
LIME1-201ENST00000309546 SCP2D1Q9UJQ7 156 aa14.38□□□□□ -0.11
LIME1-201ENST00000309546 MPTX1A8MV57 137 aa14.37□□□□□ -0.11
LIME1-201ENST00000309546 H3BMQ9 156 aa14.37□□□□□ -0.11
LIME1-201ENST00000309546 DEFB131AP59861 70 aa14.37□□□□□ -0.11
LIME1-201ENST00000309546 FAM24BQ8N5W8 94 aa14.37□□□□□ -0.11
LIME1-201ENST00000309546 SLIRPQ9GZT3 109 aaKnown RBP14.37□□□□□ -0.11
LIME1-201ENST00000309546 TRAV30A0A087WSZ9 112 aa14.36□□□□□ -0.11
LIME1-201ENST00000309546 A0A1W2PS18 150 aa14.36□□□□□ -0.11
LIME1-201ENST00000309546 NUPR2A6NF83 97 aa14.36□□□□□ -0.11
LIME1-201ENST00000309546 RND2P52198 227 aa14.36□□□□□ -0.11
LIME1-201ENST00000309546 TMEM187Q14656 261 aa14.36□□□□□ -0.11
LIME1-201ENST00000309546 C2orf83Q53S99 150 aa14.36□□□□□ -0.11
LIME1-201ENST00000309546 TMEM217Q8N7C4 229 aa14.36□□□□□ -0.11
LIME1-201ENST00000309546 STXBP6Q8NFX7 210 aa14.36□□□□□ -0.11
LIME1-201ENST00000309546 MCFD2Q8NI22 146 aa14.36□□□□□ -0.11
LIME1-201ENST00000309546 NARS2Q96I59 477 aaKnown RBP14.36□□□□□ -0.11
LIME1-201ENST00000309546 SCGB3A2Q96PL1 93 aa14.36□□□□□ -0.11
LIME1-201ENST00000309546 KCNIP3Q9Y2W7 256 aa14.36□□□□□ -0.11
LIME1-201ENST00000309546 TMEM56-RWDD3S4R434 201 aa14.36□□□□□ -0.11
LIME1-201ENST00000309546 EPPK1P58107 5090 aaKnown RBP14.36□□□□□ -0.11
LIME1-201ENST00000309546 FABP12A6NFH5 140 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms