RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 BPESC1Q9GZL8 116 aa9.21□□□□□ -0.93
CUX1-202ENST00000292538 KCNIP2Q9NS61 270 aa9.21□□□□□ -0.93
CUX1-202ENST00000292538 A0A1W2PPQ1 181 aa9.21□□□□□ -0.93
CUX1-202ENST00000292538 H3BTX0 84 aa9.21□□□□□ -0.93
CUX1-202ENST00000292538 MT-CO2P00403 227 aa9.21□□□□□ -0.93
CUX1-202ENST00000292538 FBLN7Q53RD9 439 aa9.21□□□□□ -0.93
CUX1-202ENST00000292538 NANPQ8TBE9 248 aa9.21□□□□□ -0.93
CUX1-202ENST00000292538 TMEM37Q8WXS4 190 aa9.21□□□□□ -0.93
CUX1-202ENST00000292538 DPM3Q9P2X0 92 aa9.21□□□□□ -0.93
CUX1-202ENST00000292538 H7BYZ3 331 aa9.21□□□□□ -0.94
CUX1-202ENST00000292538 COX7A2P2O60397 106 aa9.21□□□□□ -0.94
CUX1-202ENST00000292538 NDUFA6P56556 154 aa9.21□□□□□ -0.94
CUX1-202ENST00000292538 FAM3BP58499 235 aaPredicted RBP9.21□□□□□ -0.94
CUX1-202ENST00000292538 FABP9Q0Z7S8 132 aa9.21□□□□□ -0.94
CUX1-202ENST00000292538 PNRC1Q12796 327 aaPredicted RBP9.21□□□□□ -0.94
CUX1-202ENST00000292538 ASPHD1Q5U4P2 390 aa9.21□□□□□ -0.94
CUX1-202ENST00000292538 LEMD1Q68G75 181 aa9.21□□□□□ -0.94
CUX1-202ENST00000292538 VMO1Q7Z5L0 202 aa9.21□□□□□ -0.94
CUX1-202ENST00000292538 MMD2Q8IY49 270 aa9.21□□□□□ -0.94
CUX1-202ENST00000292538 ZNF114Q8NC26 417 aa9.21□□□□□ -0.94
CUX1-202ENST00000292538 FAM210BQ96KR6 192 aa9.21□□□□□ -0.94
CUX1-202ENST00000292538 RBM14Q96PK6 669 aaKnown RBP9.21□□□□□ -0.94
CUX1-202ENST00000292538 TUBA4BQ9H853 241 aa9.21□□□□□ -0.94
CUX1-202ENST00000292538 AMMECR1Q9Y4X0 333 aaPredicted RBP9.21□□□□□ -0.94
CUX1-202ENST00000292538 CELSR2Q9HCU4 2923 aa9.21□□□□□ -0.94
CUX1-202ENST00000292538 USP9YO00507 2555 aaPredicted RBP9.21□□□□□ -0.94
CUX1-202ENST00000292538 TMEM250H0YL14 139 aa9.2□□□□□ -0.94
CUX1-202ENST00000292538 PYYP10082 97 aa9.2□□□□□ -0.94
CUX1-202ENST00000292538 SUMO1P63165 101 aaKnown RBP9.2□□□□□ -0.94
CUX1-202ENST00000292538 PRR20EP86478 221 aa9.2□□□□□ -0.94
CUX1-202ENST00000292538 PRR20CP86479 221 aa9.2□□□□□ -0.94
CUX1-202ENST00000292538 PRR20DP86480 221 aa9.2□□□□□ -0.94
CUX1-202ENST00000292538 PRR20BP86481 221 aa9.2□□□□□ -0.94
CUX1-202ENST00000292538 PRR20AP86496 221 aa9.2□□□□□ -0.94
CUX1-202ENST00000292538 RPH3ALQ9UNE2 315 aa9.2□□□□□ -0.94
CUX1-202ENST00000292538 ZNF137PP52743 207 aa9.2□□□□□ -0.94
CUX1-202ENST00000292538 CYP2G1PQ6ZSU1 146 aa9.2□□□□□ -0.94
CUX1-202ENST00000292538 BLNKQ8WV28 456 aa9.2□□□□□ -0.94
CUX1-202ENST00000292538 SRSF12Q8WXF0 261 aaKnown RBP9.2□□□□□ -0.94
CUX1-202ENST00000292538 OR5B12Q96R08 314 aa9.2□□□□□ -0.94
CUX1-202ENST00000292538 FUT9Q9Y231 359 aa9.2□□□□□ -0.94
CUX1-202ENST00000292538 IGLC7A0M8Q6 106 aa9.19□□□□□ -0.94
CUX1-202ENST00000292538 RBP4P02753 201 aa9.19□□□□□ -0.94
CUX1-202ENST00000292538 CRYBB3P26998 211 aa9.19□□□□□ -0.94
CUX1-202ENST00000292538 GALR1P47211 349 aa9.19□□□□□ -0.94
CUX1-202ENST00000292538 MFAP2P55001 183 aa9.19□□□□□ -0.94
CUX1-202ENST00000292538 TPTE2P1Q5T6R2 138 aa9.19□□□□□ -0.94
CUX1-202ENST00000292538 KIR3DL3Q8N743 410 aa9.19□□□□□ -0.94
CUX1-202ENST00000292538 C8orf31Q8N9H6 132 aa9.19□□□□□ -0.94
CUX1-202ENST00000292538 SGK494Q96LW2 274 aa9.19□□□□□ -0.94
CUX1-202ENST00000292538 PDE6DO43924 150 aa9.19□□□□□ -0.94
CUX1-202ENST00000292538 TOX4O94842 621 aa9.19□□□□□ -0.94
CUX1-202ENST00000292538 VENTXO95231 258 aa9.19□□□□□ -0.94
CUX1-202ENST00000292538 FAM71F2Q6NXP2 309 aa9.19□□□□□ -0.94
CUX1-202ENST00000292538 BEND2Q8NDZ0 799 aa9.19□□□□□ -0.94
CUX1-202ENST00000292538 OR5AU1Q8NGC0 362 aa9.19□□□□□ -0.94
CUX1-202ENST00000292538 OR4A5Q8NH83 315 aa9.19□□□□□ -0.94
CUX1-202ENST00000292538 TNFRSF19Q9NS68 423 aa9.19□□□□□ -0.94
CUX1-202ENST00000292538 A0A087WWC5 75 aa9.18□□□□□ -0.94
CUX1-202ENST00000292538 MRGPRG-AS1Q2M3A8 158 aa9.18□□□□□ -0.94
CUX1-202ENST00000292538 TEX45Q8NA69 505 aa9.18□□□□□ -0.94
CUX1-202ENST00000292538 NHLRC2Q8NBF2 726 aa9.18□□□□□ -0.94
CUX1-202ENST00000292538 TNFRSF14Q92956 283 aa9.18□□□□□ -0.94
CUX1-202ENST00000292538 DNAJC4Q9NNZ3 241 aa9.18□□□□□ -0.94
CUX1-202ENST00000292538 TECRQ9NZ01 308 aaKnown RBP9.18□□□□□ -0.94
CUX1-202ENST00000292538 B4DEV8 164 aa9.18□□□□□ -0.94
CUX1-202ENST00000292538 COMPP49747 757 aaPredicted RBP9.18□□□□□ -0.94
CUX1-202ENST00000292538 UBE2L3P68036 154 aaKnown RBP9.18□□□□□ -0.94
CUX1-202ENST00000292538 C10orf113Q5VZT2 155 aa9.18□□□□□ -0.94
CUX1-202ENST00000292538 DYNAPQ8N1N2 210 aa9.18□□□□□ -0.94
CUX1-202ENST00000292538 ZNF355PQ9NSJ1 428 aa9.18□□□□□ -0.94
CUX1-202ENST00000292538 USP24Q9UPU5 2620 aa9.18□□□□□ -0.94
CUX1-202ENST00000292538 F6UZH7 168 aa9.18□□□□□ -0.94
CUX1-202ENST00000292538 IGHV3-23P01764 117 aa9.18□□□□□ -0.94
CUX1-202ENST00000292538 AGAP20933 346 aa9.18□□□□□ -0.94
CUX1-202ENST00000292538 S100PP25815 95 aa9.18□□□□□ -0.94
CUX1-202ENST00000292538 OR5I1Q13606 314 aa9.18□□□□□ -0.94
CUX1-202ENST00000292538 FXYD3Q14802 87 aa9.18□□□□□ -0.94
CUX1-202ENST00000292538 CACNG8Q8WXS5 425 aa9.18□□□□□ -0.94
CUX1-202ENST00000292538 WNT10AQ9GZT5 417 aa9.18□□□□□ -0.94
CUX1-202ENST00000292538 TRBV20OR9-2A0A075B6H5 130 aa9.17□□□□□ -0.94
CUX1-202ENST00000292538 SH2D7A6NKC9 451 aaPredicted RBP9.17□□□□□ -0.94
CUX1-202ENST00000292538 CLN5O75503 358 aa9.17□□□□□ -0.94
CUX1-202ENST00000292538 CEACAM3P40198 252 aa9.17□□□□□ -0.94
CUX1-202ENST00000292538 LINC00305Q7Z4B0 112 aa9.17□□□□□ -0.94
CUX1-202ENST00000292538 DTX2Q86UW9 622 aa9.17□□□□□ -0.94
CUX1-202ENST00000292538 LY6G5BQ8NDX9 201 aa9.17□□□□□ -0.94
CUX1-202ENST00000292538 NRGNQ92686 78 aa9.17□□□□□ -0.94
CUX1-202ENST00000292538 LINC00479Q96M42 142 aa9.17□□□□□ -0.94
CUX1-202ENST00000292538 A6NNC1 897 aa9.17□□□□□ -0.94
CUX1-202ENST00000292538 SPINK4O60575 86 aa9.17□□□□□ -0.94
CUX1-202ENST00000292538 MGST1P10620 155 aaKnown RBP9.17□□□□□ -0.94
CUX1-202ENST00000292538 EFNA4P52798 201 aa9.17□□□□□ -0.94
CUX1-202ENST00000292538 TAS2R45P59539 299 aa9.17□□□□□ -0.94
CUX1-202ENST00000292538 LYZP61626 148 aa9.17□□□□□ -0.94
CUX1-202ENST00000292538 RANP62826 216 aaKnown RBP9.17□□□□□ -0.94
CUX1-202ENST00000292538 LINC01551Q86U37 167 aa9.17□□□□□ -0.94
CUX1-202ENST00000292538 OCC1Q8TAD7 63 aa9.17□□□□□ -0.94
CUX1-202ENST00000292538 RNASEH2CQ8TDP1 164 aaKnown RBP9.17□□□□□ -0.94
CUX1-202ENST00000292538 C22orf15Q8WYQ4 148 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms