RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 OR2T4Q8NH00 348 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 OR10J5Q8NHC4 309 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 TERB2Q8NHR7 220 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 SFT2D1Q8WV19 159 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 PATE1Q8WXA2 126 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 ZNF75CPQ92670 426 aaPredicted RBP-0.16□□□□□ -2.44
VPS35-212ENST00000640313 BORCS5Q969J3 196 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 TMEM106AQ96A25 262 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 ROPN1LQ96C74 230 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 LRRC45Q96CN5 670 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 SMIM19Q96E16 107 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 C19orf60Q96EN9 201 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 SLC50A1Q9BRV3 221 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 SIKE1Q9BRV8 207 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 MED10Q9BTT4 135 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 DERL1Q9BUN8 251 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 TIPINQ9BVW5 301 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 TLNRD1Q9H1K6 362 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 MIXL1Q9H2W2 232 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 SPACA1Q9HBV2 294 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 NIT2Q9NQR4 276 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 ACER3Q9NUN7 267 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 IL36BQ9NZH7 164 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 DKKL1Q9UK85 242 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 PXMP4Q9Y6I8 212 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 ASXL3Q9C0F0 2248 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 DCCP43146 1447 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 MCM3APO60318 1980 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 EIF4G1Q04637 1599 aaKnown RBP-0.16□□□□□ -2.44
VPS35-212ENST00000640313 NBPF19A0A087WUL8 3843 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 CITO14578 2027 aa-0.16□□□□□ -2.44
VPS35-212ENST00000640313 GREB1Q4ZG55 1949 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 MAP1AP78559 2803 aaPredicted RBP-0.17□□□□□ -2.44
VPS35-212ENST00000640313 KIAA1549Q9HCM3 1950 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 HERC2O95714 4834 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 TRBV20OR9-2A0A075B6H5 130 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 TRAV9-1A0A075B6T8 112 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 TRAV3A0A0B4J244 114 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 IGHV1-58A0A0C4DH39 117 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 A0A0D9SG52 128 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 A0A0J9YY10 115 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 TRBV6-4A0A1B0GX49 114 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 A0A1B0GX78 115 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 FUOMA2VDF0 154 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 TLCD2A6NGC4 264 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 OR2T8A6NH00 312 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 B4DSR2 109 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 ZNF879B4DU55 563 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 DISC1C4P0D8 188 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 STX10O60499 249 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 NEMFO60524 1076 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 OR2J2O76002 312 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 ATP6V1G2O95670 118 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 S100A9P06702 114 aaKnown RBP-0.17□□□□□ -2.44
VPS35-212ENST00000640313 CCDC172P0C7W6 258 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 BAALC-AS2P0C853 105 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 C8orf88P0DMB2 117 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 COX6A1P12074 109 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 KCNE1P15382 129 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 UGT2B7P16662 529 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 PSMB6P28072 239 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 MAP2K4P45985 399 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 HAAOP46952 286 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 MARCKSL1P49006 195 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 EIF2B2P49770 351 aaKnown RBP-0.17□□□□□ -2.44
VPS35-212ENST00000640313 FABP9Q0Z7S8 132 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 PPP1R1AQ13522 171 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 RHEBQ15382 184 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 KCNJ8Q15842 424 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 KRTAP6-1Q3LI64 71 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 RNASE10Q5GAN6 216 aaKnown RBP-0.17□□□□□ -2.44
VPS35-212ENST00000640313 SDHAF4Q5VUM1 108 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 AADACL3Q5VUY0 350 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 GLT8D1Q68CQ7 371 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 TEX261Q6UWH6 196 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 GLIPR1L1Q6UWM5 242 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 C5orf46Q6UWT4 87 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 LINC00322Q6ZN03 302 aaPredicted RBP-0.17□□□□□ -2.44
VPS35-212ENST00000640313 AAED1Q7RTV5 226 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 OOSP2Q86WS3 158 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 GKN2Q86XP6 184 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 PHF13Q86YI8 300 aaPredicted RBP-0.17□□□□□ -2.44
VPS35-212ENST00000640313 Q8IYB0 196 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 EXOC3-AS1Q8N2X6 119 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 LRRC25Q8N386 305 aaPredicted RBP-0.17□□□□□ -2.44
VPS35-212ENST00000640313 Q8N402 240 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 C12orf45Q8N5I9 185 aaPredicted RBP-0.17□□□□□ -2.44
VPS35-212ENST00000640313 TMEM86BQ8N661 226 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 WFDC11Q8NEX6 87 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 ATP6V1C2Q8NEY4 427 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 GPR32P1Q8NGA4 272 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 OR5A1Q8NGJ0 315 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 OR8D4Q8NGM9 314 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 OR13C4Q8NGS5 318 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 TSKUQ8WUA8 353 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 KLK6Q92876 244 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 ADAT3Q96EY9 351 aaPredicted RBP-0.17□□□□□ -2.44
VPS35-212ENST00000640313 CNBD2Q96M20 576 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 KCTD7Q96MP8 289 aa-0.17□□□□□ -2.44
VPS35-212ENST00000640313 NIPSNAP1Q9BPW8 284 aa-0.17□□□□□ -2.44
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms