RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 GAMTQ14353 236 aa13.37□□□□□ -0.27
CLN3-252ENST00000636907 ZNF562Q6V9R5 426 aa13.37□□□□□ -0.27
CLN3-252ENST00000636907 GGTLC1Q9BX51 225 aa13.37□□□□□ -0.27
CLN3-252ENST00000636907 FAM96BQ9Y3D0 163 aa13.37□□□□□ -0.27
CLN3-252ENST00000636907 A0A1B0GV50 99 aa13.37□□□□□ -0.27
CLN3-252ENST00000636907 H2AFB1P0C5Y9 115 aa13.37□□□□□ -0.27
CLN3-252ENST00000636907 OPRK1P41145 380 aa13.37□□□□□ -0.27
CLN3-252ENST00000636907 ZNF726P1Q15940 193 aa13.37□□□□□ -0.27
CLN3-252ENST00000636907 TOR2AQ5JU69 321 aa13.37□□□□□ -0.27
CLN3-252ENST00000636907 SPSB3Q6PJ21 355 aa13.37□□□□□ -0.27
CLN3-252ENST00000636907 TMEM144Q7Z5S9 345 aa13.37□□□□□ -0.27
CLN3-252ENST00000636907 WFDC11Q8NEX6 87 aa13.37□□□□□ -0.27
CLN3-252ENST00000636907 OR1P1Q8NH06 330 aa13.37□□□□□ -0.27
CLN3-252ENST00000636907 OR2T6Q8NHC8 308 aa13.37□□□□□ -0.27
CLN3-252ENST00000636907 CACNG8Q8WXS5 425 aa13.37□□□□□ -0.27
CLN3-252ENST00000636907 ARPC1AQ92747 370 aa13.37□□□□□ -0.27
CLN3-252ENST00000636907 F11RQ9Y624 299 aaKnown RBP13.37□□□□□ -0.27
CLN3-252ENST00000636907 CSMD1Q96PZ7 3565 aa13.36□□□□□ -0.27
CLN3-252ENST00000636907 HLA-DRB1P01911 266 aa13.36□□□□□ -0.27
CLN3-252ENST00000636907 SRSF3P84103 164 aaKnown RBP13.36□□□□□ -0.27
CLN3-252ENST00000636907 SSX7Q7RTT5 188 aa13.36□□□□□ -0.27
CLN3-252ENST00000636907 SLC35E1Q96K37 410 aa13.36□□□□□ -0.27
CLN3-252ENST00000636907 SSX3Q99909 188 aa13.36□□□□□ -0.27
CLN3-252ENST00000636907 RASL11BQ9BPW5 248 aa13.36□□□□□ -0.27
CLN3-252ENST00000636907 DMRT1Q9Y5R6 373 aa13.36□□□□□ -0.27
CLN3-252ENST00000636907 IGKV1OR2-108A0A075B7D4 117 aa13.35□□□□□ -0.27
CLN3-252ENST00000636907 IGHV7-81A0A0B4J1V7 117 aa13.35□□□□□ -0.27
CLN3-252ENST00000636907 FBP1P09467 338 aa13.35□□□□□ -0.27
CLN3-252ENST00000636907 CTRB1P17538 263 aa13.35□□□□□ -0.27
CLN3-252ENST00000636907 MIC13Q5XKP0 118 aa13.35□□□□□ -0.27
CLN3-252ENST00000636907 CTRB2Q6GPI1 263 aa13.35□□□□□ -0.27
CLN3-252ENST00000636907 TMEM219Q86XT9 240 aa13.35□□□□□ -0.27
CLN3-252ENST00000636907 RPP25LQ8N5L8 163 aaKnown RBP13.35□□□□□ -0.27
CLN3-252ENST00000636907 SFT2D1Q8WV19 159 aa13.35□□□□□ -0.27
CLN3-252ENST00000636907 MISP3Q96FF7 219 aa13.35□□□□□ -0.27
CLN3-252ENST00000636907 PXMP4Q9Y6I8 212 aa13.35□□□□□ -0.27
CLN3-252ENST00000636907 IGHV3-48P01763 117 aa13.34□□□□□ -0.27
CLN3-252ENST00000636907 MBP02144 154 aa13.34□□□□□ -0.27
CLN3-252ENST00000636907 ASPHD1Q5U4P2 390 aa13.34□□□□□ -0.27
CLN3-252ENST00000636907 ACY3Q96HD9 319 aa13.34□□□□□ -0.27
CLN3-252ENST00000636907 RCC1LQ96I51 464 aaKnown RBP13.34□□□□□ -0.27
CLN3-252ENST00000636907 RBM14Q96PK6 669 aaKnown RBP13.34□□□□□ -0.27
CLN3-252ENST00000636907 SLC25A33Q9BSK2 321 aa13.34□□□□□ -0.27
CLN3-252ENST00000636907 WNT10AQ9GZT5 417 aa13.34□□□□□ -0.27
CLN3-252ENST00000636907 MRPL36Q9P0J6 103 aaKnown RBP13.34□□□□□ -0.27
CLN3-252ENST00000636907 EIF3GO75821 320 aaKnown RBP eCLIP13.34□□□□□ -0.27
CLN3-252ENST00000636907 YIF1AO95070 293 aa13.34□□□□□ -0.27
CLN3-252ENST00000636907 CCL20P78556 96 aa13.34□□□□□ -0.27
CLN3-252ENST00000636907 RAB31Q13636 194 aa13.34□□□□□ -0.27
CLN3-252ENST00000636907 UQCC3Q6UW78 93 aa13.34□□□□□ -0.27
CLN3-252ENST00000636907 OR10G4Q8NGN3 311 aa13.34□□□□□ -0.27
CLN3-252ENST00000636907 OR10G9Q8NGN4 311 aa13.34□□□□□ -0.27
CLN3-252ENST00000636907 OR10G7Q8NGN6 311 aa13.34□□□□□ -0.27
CLN3-252ENST00000636907 LINC00052Q96N35 136 aa13.34□□□□□ -0.27
CLN3-252ENST00000636907 HSPB9Q9BQS6 159 aa13.34□□□□□ -0.27
CLN3-252ENST00000636907 CELSR1Q9NYQ6 3014 aa13.33□□□□□ -0.28
CLN3-252ENST00000636907 SOX15O60248 233 aa13.33□□□□□ -0.28
CLN3-252ENST00000636907 CRYGCP07315 174 aa13.33□□□□□ -0.28
CLN3-252ENST00000636907 EGR2P11161 476 aaPredicted RBP13.33□□□□□ -0.28
CLN3-252ENST00000636907 M6PRP20645 277 aa13.33□□□□□ -0.28
CLN3-252ENST00000636907 ACOT6Q3I5F7 207 aaPredicted RBP13.33□□□□□ -0.28
CLN3-252ENST00000636907 GCSAMLQ5JQS6 135 aa13.33□□□□□ -0.28
CLN3-252ENST00000636907 CYB5R2Q6BCY4 276 aa13.33□□□□□ -0.28
CLN3-252ENST00000636907 LCN15Q6UWW0 184 aa13.33□□□□□ -0.28
CLN3-252ENST00000636907 COMMD1Q8N668 190 aa13.33□□□□□ -0.28
CLN3-252ENST00000636907 STPG3Q8N7X2 389 aa13.33□□□□□ -0.28
CLN3-252ENST00000636907 C5orf56Q8N8D9 126 aa13.33□□□□□ -0.28
CLN3-252ENST00000636907 BPIFCQ8NFQ6 507 aa13.33□□□□□ -0.28
CLN3-252ENST00000636907 MBD3L1Q8WWY6 194 aa13.33□□□□□ -0.28
CLN3-252ENST00000636907 TMEM231Q9H6L2 316 aa13.33□□□□□ -0.28
CLN3-252ENST00000636907 KCNIP2Q9NS61 270 aa13.33□□□□□ -0.28
CLN3-252ENST00000636907 MOB4Q9Y3A3 225 aa13.33□□□□□ -0.28
CLN3-252ENST00000636907 PDZD2O15018 2839 aa13.33□□□□□ -0.28
CLN3-252ENST00000636907 IGHV3-21A0A0B4J1V1 117 aa13.32□□□□□ -0.28
CLN3-252ENST00000636907 TRAV1-1A0A0B4J248 108 aa13.32□□□□□ -0.28
CLN3-252ENST00000636907 SH2D7A6NKC9 451 aaPredicted RBP13.32□□□□□ -0.28
CLN3-252ENST00000636907 H3BUX3 64 aa13.32□□□□□ -0.28
CLN3-252ENST00000636907 CORTO00230 105 aa13.32□□□□□ -0.28
CLN3-252ENST00000636907 DEFA4P12838 97 aa13.32□□□□□ -0.28
CLN3-252ENST00000636907 OR10J1P30954 320 aa13.32□□□□□ -0.28
CLN3-252ENST00000636907 RPL29P47914 159 aaKnown RBP13.32□□□□□ -0.28
CLN3-252ENST00000636907 ETFRF1Q6IPR1 90 aa13.32□□□□□ -0.28
CLN3-252ENST00000636907 FAM122CQ6P4D5 195 aa13.32□□□□□ -0.28
CLN3-252ENST00000636907 BCL6BQ8N143 479 aaPredicted RBP13.32□□□□□ -0.28
CLN3-252ENST00000636907 CIARTQ8N365 385 aaPredicted RBP13.32□□□□□ -0.28
CLN3-252ENST00000636907 LFNGQ8NES3 379 aa13.32□□□□□ -0.28
CLN3-252ENST00000636907 SLC45A2Q9UMX9 530 aa13.32□□□□□ -0.28
CLN3-252ENST00000636907 PRRC2AP48634 2157 aaKnown RBP13.32□□□□□ -0.28
CLN3-252ENST00000636907 MDFIC2A0A1B0GVS7 189 aa13.31□□□□□ -0.28
CLN3-252ENST00000636907 BTBD17A6NE02 478 aa13.31□□□□□ -0.28
CLN3-252ENST00000636907 NPIPB5A8MRT5 1133 aa13.31□□□□□ -0.28
CLN3-252ENST00000636907 MT-CO2P00403 227 aa13.31□□□□□ -0.28
CLN3-252ENST00000636907 FSHBP01225 129 aa13.31□□□□□ -0.28
CLN3-252ENST00000636907 HBE1P02100 147 aa13.31□□□□□ -0.28
CLN3-252ENST00000636907 BPIFB3P59826 476 aa13.31□□□□□ -0.28
CLN3-252ENST00000636907 B2MP61769 119 aa13.31□□□□□ -0.28
CLN3-252ENST00000636907 PRR20EP86478 221 aa13.31□□□□□ -0.28
CLN3-252ENST00000636907 PRR20CP86479 221 aa13.31□□□□□ -0.28
CLN3-252ENST00000636907 PRR20DP86480 221 aa13.31□□□□□ -0.28
CLN3-252ENST00000636907 PRR20BP86481 221 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms