RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 MED14OSP0DP75 135 aa5.44□□□□□ -1.54
VPS53-217ENST00000575100 PTHLHP12272 177 aa5.44□□□□□ -1.54
VPS53-217ENST00000575100 RPS20P60866 119 aaKnown RBP5.44□□□□□ -1.54
VPS53-217ENST00000575100 ODF3L2Q3SX64 289 aa5.44□□□□□ -1.54
VPS53-217ENST00000575100 TPTE2P1Q5T6R2 138 aa5.44□□□□□ -1.54
VPS53-217ENST00000575100 ZNF626Q68DY1 528 aa5.44□□□□□ -1.54
VPS53-217ENST00000575100 ZNF57Q68EA5 555 aaPredicted RBP5.44□□□□□ -1.54
VPS53-217ENST00000575100 AWAT2Q6E213 333 aa5.44□□□□□ -1.54
VPS53-217ENST00000575100 GLIPR1L1Q6UWM5 242 aa5.44□□□□□ -1.54
VPS53-217ENST00000575100 ZNF826PQ6ZT77 177 aa5.44□□□□□ -1.54
VPS53-217ENST00000575100 SSX8Q7RTT4 187 aa5.44□□□□□ -1.54
VPS53-217ENST00000575100 C11orf53Q8IXP5 236 aa5.44□□□□□ -1.54
VPS53-217ENST00000575100 CIARTQ8N365 385 aaPredicted RBP5.44□□□□□ -1.54
VPS53-217ENST00000575100 FTMTQ8N4E7 242 aa5.44□□□□□ -1.54
VPS53-217ENST00000575100 RBPMSQ93062 196 aaKnown RBP5.44□□□□□ -1.54
VPS53-217ENST00000575100 TMEM100Q9NV29 134 aa5.44□□□□□ -1.54
VPS53-217ENST00000575100 TAAR3PQ9P1P4 343 aa5.44□□□□□ -1.54
VPS53-217ENST00000575100 C14orf166Q9Y224 244 aaKnown RBP5.44□□□□□ -1.54
VPS53-217ENST00000575100 MPC1Q9Y5U8 109 aa5.44□□□□□ -1.54
VPS53-217ENST00000575100 JMJD1CQ15652 2540 aa5.44□□□□□ -1.54
VPS53-217ENST00000575100 KRTAP9-6A0A140TA67 174 aa5.44□□□□□ -1.54
VPS53-217ENST00000575100 RPS10-NUDT3A0A1W2PQS6 291 aa5.44□□□□□ -1.54
VPS53-217ENST00000575100 C20orf202A1L168 122 aa5.44□□□□□ -1.54
VPS53-217ENST00000575100 OR5H14A6NHG9 310 aa5.44□□□□□ -1.54
VPS53-217ENST00000575100 J3QRK9 145 aa5.44□□□□□ -1.54
VPS53-217ENST00000575100 FABP7O15540 132 aa5.44□□□□□ -1.54
VPS53-217ENST00000575100 TNFSF12O43508 249 aa5.44□□□□□ -1.54
VPS53-217ENST00000575100 NUDT3O95989 172 aa5.44□□□□□ -1.54
VPS53-217ENST00000575100 MT-ND4P03905 459 aa5.44□□□□□ -1.54
VPS53-217ENST00000575100 OR5AL1P0C617 328 aa5.44□□□□□ -1.54
VPS53-217ENST00000575100 RAB5AP20339 215 aa5.44□□□□□ -1.54
VPS53-217ENST00000575100 SUB1P53999 127 aaKnown RBP eCLIP5.44□□□□□ -1.54
VPS53-217ENST00000575100 OR2F1Q13607 317 aa5.44□□□□□ -1.54
VPS53-217ENST00000575100 SURF2Q15527 256 aaPredicted RBP5.44□□□□□ -1.54
VPS53-217ENST00000575100 ZNF79Q15937 498 aa5.44□□□□□ -1.54
VPS53-217ENST00000575100 LINC00242Q5T6M2 205 aa5.44□□□□□ -1.54
VPS53-217ENST00000575100 CNIH2Q6PI25 160 aa5.44□□□□□ -1.54
VPS53-217ENST00000575100 SLC25A26Q70HW3 274 aa5.44□□□□□ -1.54
VPS53-217ENST00000575100 C1orf174Q8IYL3 243 aa5.44□□□□□ -1.54
VPS53-217ENST00000575100 OR4M1Q8NGD0 313 aa5.44□□□□□ -1.54
VPS53-217ENST00000575100 OR5A2Q8NGI9 324 aa5.44□□□□□ -1.54
VPS53-217ENST00000575100 OR8S1Q8NH09 359 aa5.44□□□□□ -1.54
VPS53-217ENST00000575100 OR2T6Q8NHC8 308 aa5.44□□□□□ -1.54
VPS53-217ENST00000575100 ARPC1AQ92747 370 aa5.44□□□□□ -1.54
VPS53-217ENST00000575100 SEH1LQ96EE3 360 aa5.44□□□□□ -1.54
VPS53-217ENST00000575100 C20orf144Q9BQM9 153 aa5.44□□□□□ -1.54
VPS53-217ENST00000575100 SSBP3Q9BWW4 388 aaPredicted RBP5.44□□□□□ -1.54
VPS53-217ENST00000575100 OR51I2Q9H344 312 aa5.44□□□□□ -1.54
VPS53-217ENST00000575100 BANF2Q9H503 90 aa5.44□□□□□ -1.54
VPS53-217ENST00000575100 ABRACLQ9P1F3 81 aa5.44□□□□□ -1.54
VPS53-217ENST00000575100 SS18L2Q9UHA2 77 aa5.44□□□□□ -1.54
VPS53-217ENST00000575100 HIVEP2P31629 2446 aa5.43□□□□□ -1.54
VPS53-217ENST00000575100 NCBP2LA6PVI3 153 aaKnown RBP5.43□□□□□ -1.54
VPS53-217ENST00000575100 TMEM14DPA8MWL7 114 aa5.43□□□□□ -1.54
VPS53-217ENST00000575100 IGHV1-46P01743 117 aa5.43□□□□□ -1.54
VPS53-217ENST00000575100 SOD3P08294 240 aa5.43□□□□□ -1.54
VPS53-217ENST00000575100 GALR1P47211 349 aa5.43□□□□□ -1.54
VPS53-217ENST00000575100 RPS23P62266 143 aaKnown RBP5.43□□□□□ -1.54
VPS53-217ENST00000575100 HLA-DRB5Q30154 266 aa5.43□□□□□ -1.54
VPS53-217ENST00000575100 TCTEX1D4Q5JR98 221 aa5.43□□□□□ -1.54
VPS53-217ENST00000575100 OR51S1Q8NGJ8 323 aa5.43□□□□□ -1.54
VPS53-217ENST00000575100 OR4P4Q8NGL7 312 aa5.43□□□□□ -1.54
VPS53-217ENST00000575100 ZFAND1Q8TCF1 268 aa5.43□□□□□ -1.54
VPS53-217ENST00000575100 FAM168AQ92567 244 aa5.43□□□□□ -1.54
VPS53-217ENST00000575100 RARRES2Q99969 163 aa5.43□□□□□ -1.54
VPS53-217ENST00000575100 RBFOX1Q9NWB1 397 aaKnown RBP5.43□□□□□ -1.54
VPS53-217ENST00000575100 CENPVL3A0A0U1RRI6 287 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 A0A1B0GWB2 263 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 K7ERU9 68 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 TAAR5O14804 337 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 VENTXO95231 258 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 HAND1O96004 215 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 TFF1P04155 84 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 CD55P08174 381 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 TRAPPC2P0DI81 140 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 TRAPPC2BP0DI82 140 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 TCL1AP56279 114 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 GNG3P63215 75 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 CCL8P80075 99 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 PIGYQ3MUY2 71 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 Q5BKY6 102 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 UBE2NLQ5JXB2 153 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 MUC15Q8N387 334 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 ZNF114Q8NC26 417 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 OR13G1Q8NGZ3 307 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 OR1P1Q8NH06 330 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 AQP3Q92482 292 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 MRAP2Q96G30 205 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 DIRAS2Q96HU8 199 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 P2RX4Q99571 388 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 SOSTQ9BQB4 213 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 LPAR5Q9H1C0 372 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 WDR13Q9H1Z4 485 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 ZNF256Q9Y2P7 627 aaPredicted RBP5.42□□□□□ -1.54
VPS53-217ENST00000575100 CR1P17927 2039 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 TLN2Q9Y4G6 2542 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 TGIF2-C20orf24A0A0A6YYL0 155 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 INAFM1C9JVW0 142 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 TRAPPC2LH3BP13 241 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 C15orf65H3BRN8 121 aa5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms