RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 A8MWP6 167 aa18.46■□□□□ 0.55
VPS53-211ENST00000571805 DLL1O00548 723 aa18.46■□□□□ 0.55
VPS53-211ENST00000571805 CBLN1P23435 193 aa18.46■□□□□ 0.55
VPS53-211ENST00000571805 GNG4P50150 75 aa18.46■□□□□ 0.55
VPS53-211ENST00000571805 TCF15Q12870 199 aa18.46■□□□□ 0.55
VPS53-211ENST00000571805 LYPD2Q6UXB3 125 aa18.46■□□□□ 0.55
VPS53-211ENST00000571805 ANKRD11Q6UB99 2663 aaPredicted RBP18.46■□□□□ 0.55
VPS53-211ENST00000571805 ZGRF1Q86YA3 2104 aa18.45■□□□□ 0.54
VPS53-211ENST00000571805 CGB1A6NKQ9 187 aa18.45■□□□□ 0.54
VPS53-211ENST00000571805 USF1P22415 310 aaPredicted RBP18.45■□□□□ 0.54
VPS53-211ENST00000571805 TAS2R45P59539 299 aa18.45■□□□□ 0.54
VPS53-211ENST00000571805 ERVFC1-1P60608 527 aa18.45■□□□□ 0.54
VPS53-211ENST00000571805 ERHP84090 104 aaKnown RBP18.45■□□□□ 0.54
VPS53-211ENST00000571805 TMEM167AQ8TBQ9 72 aa18.45■□□□□ 0.54
VPS53-211ENST00000571805 ZNF596Q8TC21 504 aa18.45■□□□□ 0.54
VPS53-211ENST00000571805 JKAMPQ9P055 326 aa18.45■□□□□ 0.54
VPS53-211ENST00000571805 ROS1P08922 2347 aa18.45■□□□□ 0.54
VPS53-211ENST00000571805 OR10J4P0C629 311 aa18.45■□□□□ 0.54
VPS53-211ENST00000571805 C8orf88P0DMB2 117 aa18.45■□□□□ 0.54
VPS53-211ENST00000571805 MMD2Q8IY49 270 aa18.45■□□□□ 0.54
VPS53-211ENST00000571805 NOL4LQ96MY1 436 aaPredicted RBP18.45■□□□□ 0.54
VPS53-211ENST00000571805 MAP1BP46821 2468 aaKnown RBP18.44■□□□□ 0.54
VPS53-211ENST00000571805 RPEL1Q2QD12 228 aa18.44■□□□□ 0.54
VPS53-211ENST00000571805 OR4C13Q8NGP0 309 aa18.44■□□□□ 0.54
VPS53-211ENST00000571805 ST6GALNAC6Q969X2 333 aa18.44■□□□□ 0.54
VPS53-211ENST00000571805 TP53TG3Q9ULZ0 132 aa18.44■□□□□ 0.54
VPS53-211ENST00000571805 ATMQ13315 3056 aa18.44■□□□□ 0.54
VPS53-211ENST00000571805 FRMD6-AS1P0C7T7 363 aa18.44■□□□□ 0.54
VPS53-211ENST00000571805 WT1-ASQ06250 92 aa18.44■□□□□ 0.54
VPS53-211ENST00000571805 MORN5Q5VZ52 161 aa18.44■□□□□ 0.54
VPS53-211ENST00000571805 LINC00311Q8N616 119 aa18.44■□□□□ 0.54
VPS53-211ENST00000571805 H1FXQ92522 213 aaKnown RBP18.44■□□□□ 0.54
VPS53-211ENST00000571805 CCL17Q92583 94 aa18.44■□□□□ 0.54
VPS53-211ENST00000571805 FAM167A-AS1Q96KT0 104 aa18.44■□□□□ 0.54
VPS53-211ENST00000571805 A0A1W2PRE2 83 aa18.43■□□□□ 0.54
VPS53-211ENST00000571805 GRIFINA4D1Z8 144 aa18.43■□□□□ 0.54
VPS53-211ENST00000571805 IGLV2-23P01705 113 aa18.43■□□□□ 0.54
VPS53-211ENST00000571805 SUMO1P63165 101 aaKnown RBP18.43■□□□□ 0.54
VPS53-211ENST00000571805 PDPNQ86YL7 162 aa18.43■□□□□ 0.54
VPS53-211ENST00000571805 C8orf31Q8N9H6 132 aa18.43■□□□□ 0.54
VPS53-211ENST00000571805 OR10X1Q8NGY0 326 aa18.43■□□□□ 0.54
VPS53-211ENST00000571805 OR4A5Q8NH83 315 aa18.43■□□□□ 0.54
VPS53-211ENST00000571805 ABHD17AQ96GS6 310 aa18.43■□□□□ 0.54
VPS53-211ENST00000571805 MRPL18Q9H0U6 180 aaKnown RBP18.43■□□□□ 0.54
VPS53-211ENST00000571805 TMEM106BQ9NUM4 274 aa18.43■□□□□ 0.54
VPS53-211ENST00000571805 ARFGEF3Q5TH69 2177 aa18.43■□□□□ 0.54
VPS53-211ENST00000571805 SSBP2P81877 361 aaPredicted RBP18.42■□□□□ 0.54
VPS53-211ENST00000571805 FAM71F2Q6NXP2 309 aa18.42■□□□□ 0.54
VPS53-211ENST00000571805 OR1L6Q8NGR2 347 aa18.42■□□□□ 0.54
VPS53-211ENST00000571805 SLC25A2Q9BXI2 301 aa18.42■□□□□ 0.54
VPS53-211ENST00000571805 MRPL32Q9BYC8 188 aaKnown RBP18.42■□□□□ 0.54
VPS53-211ENST00000571805 NDUFB3O43676 98 aa18.42■□□□□ 0.54
VPS53-211ENST00000571805 SSX2Q16385 188 aa18.42■□□□□ 0.54
VPS53-211ENST00000571805 TMEM186Q96B77 213 aa18.42■□□□□ 0.54
VPS53-211ENST00000571805 FNDC4Q9H6D8 234 aaPredicted RBP18.42■□□□□ 0.54
VPS53-211ENST00000571805 CTSZQ9UBR2 303 aa18.42■□□□□ 0.54
VPS53-211ENST00000571805 TRAV5A0A0B4J249 113 aa18.41■□□□□ 0.54
VPS53-211ENST00000571805 A0A1W2PN81 502 aa18.41■□□□□ 0.54
VPS53-211ENST00000571805 IGLV2-8P01709 118 aa18.41■□□□□ 0.54
VPS53-211ENST00000571805 LINC00310P59036 64 aa18.41■□□□□ 0.54
VPS53-211ENST00000571805 RAB4BP61018 213 aa18.41■□□□□ 0.54
VPS53-211ENST00000571805 IQCJQ1A5X6 159 aa18.41■□□□□ 0.54
VPS53-211ENST00000571805 RIF1Q5UIP0 2472 aaKnown RBP18.41■□□□□ 0.54
VPS53-211ENST00000571805 DLX6P56179 175 aa18.41■□□□□ 0.54
VPS53-211ENST00000571805 LRRC10Q5BKY1 277 aa18.41■□□□□ 0.54
VPS53-211ENST00000571805 C10orf55Q5SWW7 151 aa18.41■□□□□ 0.54
VPS53-211ENST00000571805 VSTM2AQ8TAG5 236 aa18.41■□□□□ 0.54
VPS53-211ENST00000571805 RNASE7Q9H1E1 156 aaKnown RBP18.41■□□□□ 0.54
VPS53-211ENST00000571805 DNAJC4Q9NNZ3 241 aa18.41■□□□□ 0.54
VPS53-211ENST00000571805 OSTCQ9NRP0 149 aa18.41■□□□□ 0.54
VPS53-211ENST00000571805 OR8I2Q8N0Y5 310 aa18.4■□□□□ 0.54
VPS53-211ENST00000571805 Q8NA96 180 aa18.4■□□□□ 0.54
VPS53-211ENST00000571805 IGF2BP2-AS1Q96M15 143 aa18.4■□□□□ 0.54
VPS53-211ENST00000571805 ZNF430Q9H8G1 570 aaPredicted RBP18.4■□□□□ 0.54
VPS53-211ENST00000571805 SH3BGRL2Q9UJC5 107 aa18.4■□□□□ 0.54
VPS53-211ENST00000571805 LOXP28300 417 aaPredicted RBP18.4■□□□□ 0.54
VPS53-211ENST00000571805 IER3P46695 156 aa18.4■□□□□ 0.54
VPS53-211ENST00000571805 TIGITQ495A1 244 aa18.4■□□□□ 0.54
VPS53-211ENST00000571805 RNASE6Q93091 150 aaKnown RBP18.4■□□□□ 0.54
VPS53-211ENST00000571805 RNF2Q99496 336 aa18.4■□□□□ 0.54
VPS53-211ENST00000571805 PPOXP50336 477 aa18.39■□□□□ 0.53
VPS53-211ENST00000571805 ZNF137PP52743 207 aa18.39■□□□□ 0.53
VPS53-211ENST00000571805 CMTM2Q8TAZ6 248 aa18.39■□□□□ 0.53
VPS53-211ENST00000571805 WASHC3Q9Y3C0 194 aa18.39■□□□□ 0.53
VPS53-211ENST00000571805 PCNX1Q96RV3 2341 aa18.39■□□□□ 0.53
VPS53-211ENST00000571805 FCN1O00602 326 aa18.39■□□□□ 0.53
VPS53-211ENST00000571805 ESDP10768 282 aa18.39■□□□□ 0.53
VPS53-211ENST00000571805 ST6GALNAC3Q8NDV1 305 aa18.39■□□□□ 0.53
VPS53-211ENST00000571805 PRSS33Q8NF86 280 aa18.39■□□□□ 0.53
VPS53-211ENST00000571805 ZFHX2Q9C0A1 2572 aaPredicted RBP18.38■□□□□ 0.53
VPS53-211ENST00000571805 CRISP2P16562 243 aa18.38■□□□□ 0.53
VPS53-211ENST00000571805 MRGPRG-AS1Q2M3A8 158 aa18.38■□□□□ 0.53
VPS53-211ENST00000571805 PATE2Q6UY27 113 aa18.38■□□□□ 0.53
VPS53-211ENST00000571805 MS4A10Q96PG2 267 aa18.38■□□□□ 0.53
VPS53-211ENST00000571805 GNB1LQ9BYB4 327 aa18.38■□□□□ 0.53
VPS53-211ENST00000571805 NAV3Q8IVL0 2385 aa18.38■□□□□ 0.53
VPS53-211ENST00000571805 KALRNO60229 2985 aa18.38■□□□□ 0.53
VPS53-211ENST00000571805 IGKV1D-37A0A075B6S9 117 aa18.38■□□□□ 0.53
VPS53-211ENST00000571805 ISLRO14498 428 aa18.38■□□□□ 0.53
VPS53-211ENST00000571805 CX3CL1P78423 397 aa18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms