RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 C10orf55Q5SWW7 151 aa14.57□□□□□ -0.08
VIM-209ENST00000544301 OR2T6Q8NHC8 308 aa14.57□□□□□ -0.08
VIM-209ENST00000544301 LINC01560Q8TB33 94 aa14.57□□□□□ -0.08
VIM-209ENST00000544301 ZNF503Q96F45 646 aa14.57□□□□□ -0.08
VIM-209ENST00000544301 UHRF2Q96PU4 802 aa14.57□□□□□ -0.08
VIM-209ENST00000544301 TECRQ9NZ01 308 aaKnown RBP14.57□□□□□ -0.08
VIM-209ENST00000544301 ARL2-SNX15V9GYD0 113 aa14.57□□□□□ -0.08
VIM-209ENST00000544301 MDFIC2A0A1B0GVS7 189 aa14.56□□□□□ -0.08
VIM-209ENST00000544301 LINC00587B1AMM8 73 aa14.56□□□□□ -0.08
VIM-209ENST00000544301 C19orf24Q9BVV8 132 aa14.56□□□□□ -0.08
VIM-209ENST00000544301 TMEM133Q9H2Q1 129 aa14.56□□□□□ -0.08
VIM-209ENST00000544301 TMEM167BQ9NRX6 74 aa14.56□□□□□ -0.08
VIM-209ENST00000544301 POLEQ07864 2286 aa14.56□□□□□ -0.08
VIM-209ENST00000544301 FABP4P15090 132 aa14.56□□□□□ -0.08
VIM-209ENST00000544301 HNF1AP20823 631 aa14.56□□□□□ -0.08
VIM-209ENST00000544301 IL3RAP26951 378 aa14.56□□□□□ -0.08
VIM-209ENST00000544301 MC5RP33032 325 aa14.56□□□□□ -0.08
VIM-209ENST00000544301 FOXL1Q12952 345 aa14.56□□□□□ -0.08
VIM-209ENST00000544301 HLA-DRB5Q30154 266 aa14.56□□□□□ -0.08
VIM-209ENST00000544301 RITA1Q96K30 269 aa14.56□□□□□ -0.08
VIM-209ENST00000544301 CHODLQ9H9P2 273 aa14.56□□□□□ -0.08
VIM-209ENST00000544301 TRBV23-1A0A0A0MS06 115 aa14.55□□□□□ -0.08
VIM-209ENST00000544301 TMEM183AQ8IXX5 376 aa14.55□□□□□ -0.08
VIM-209ENST00000544301 ACY3Q96HD9 319 aa14.55□□□□□ -0.08
VIM-209ENST00000544301 LYNX1G3V0Z9 82 aa14.54□□□□□ -0.08
VIM-209ENST00000544301 SLC25A17O43808 307 aa14.54□□□□□ -0.08
VIM-209ENST00000544301 LYNX1P0DP58 116 aa14.54□□□□□ -0.08
VIM-209ENST00000544301 VMA21Q3ZAQ7 101 aa14.54□□□□□ -0.08
VIM-209ENST00000544301 TEX38Q6PEX7 206 aa14.54□□□□□ -0.08
VIM-209ENST00000544301 PQLC2Q6ZP29 291 aa14.54□□□□□ -0.08
VIM-209ENST00000544301 RNASEH2CQ8TDP1 164 aaKnown RBP14.54□□□□□ -0.08
VIM-209ENST00000544301 TMEM37Q8WXS4 190 aa14.54□□□□□ -0.08
VIM-209ENST00000544301 HIST1H2BLQ99880 126 aa14.54□□□□□ -0.08
VIM-209ENST00000544301 TPSG1Q9NRR2 321 aa14.54□□□□□ -0.08
VIM-209ENST00000544301 RALYQ9UKM9 306 aaKnown RBP14.54□□□□□ -0.08
VIM-209ENST00000544301 MSRB2Q9Y3D2 182 aa14.54□□□□□ -0.08
VIM-209ENST00000544301 FAM90A27PA6NNH2 459 aa14.54□□□□□ -0.08
VIM-209ENST00000544301 C9JCJ5 164 aa14.54□□□□□ -0.08
VIM-209ENST00000544301 K7EN84 100 aa14.54□□□□□ -0.08
VIM-209ENST00000544301 PPOXP50336 477 aa14.54□□□□□ -0.08
VIM-209ENST00000544301 CASP6P55212 293 aa14.54□□□□□ -0.08
VIM-209ENST00000544301 MRGPRG-AS1Q2M3A8 158 aa14.54□□□□□ -0.08
VIM-209ENST00000544301 OR1P1Q8NH06 330 aa14.54□□□□□ -0.08
VIM-209ENST00000544301 SGMS2Q8NHU3 365 aa14.54□□□□□ -0.08
VIM-209ENST00000544301 FNDC4Q9H6D8 234 aaPredicted RBP14.54□□□□□ -0.08
VIM-209ENST00000544301 XKRY2A2RUG3 117 aa14.53□□□□□ -0.08
VIM-209ENST00000544301 OR7C2O60412 319 aa14.53□□□□□ -0.08
VIM-209ENST00000544301 IGHV2-70P01814 119 aa14.53□□□□□ -0.08
VIM-209ENST00000544301 GRNP28799 593 aaKnown RBP14.53□□□□□ -0.08
VIM-209ENST00000544301 TAS2R45P59539 299 aa14.53□□□□□ -0.08
VIM-209ENST00000544301 SSBP2P81877 361 aaPredicted RBP14.53□□□□□ -0.08
VIM-209ENST00000544301 COA6Q5JTJ3 125 aaKnown RBP14.53□□□□□ -0.08
VIM-209ENST00000544301 CDPF1Q6NVV7 123 aa14.53□□□□□ -0.08
VIM-209ENST00000544301 OR10G8Q8NGN5 311 aa14.53□□□□□ -0.08
VIM-209ENST00000544301 SLC25A33Q9BSK2 321 aa14.53□□□□□ -0.08
VIM-209ENST00000544301 IGHV3-72A0A0B4J1Y9 119 aa14.53□□□□□ -0.08
VIM-209ENST00000544301 A0A0U1RQK1 487 aa14.53□□□□□ -0.08
VIM-209ENST00000544301 ZNF320A2RRD8 509 aa14.53□□□□□ -0.08
VIM-209ENST00000544301 PSMB11A5LHX3 300 aa14.53□□□□□ -0.08
VIM-209ENST00000544301 ENSAO43768 121 aaKnown RBP14.53□□□□□ -0.08
VIM-209ENST00000544301 CA7P43166 264 aa14.53□□□□□ -0.08
VIM-209ENST00000544301 LGALS7P47929 136 aa14.53□□□□□ -0.08
VIM-209ENST00000544301 SUB1P53999 127 aaKnown RBP eCLIP14.53□□□□□ -0.082e-9■■■□□ 17.6
VIM-209ENST00000544301 RPL15P61313 204 aaKnown RBP14.53□□□□□ -0.08
VIM-209ENST00000544301 FBXL19-AS1Q494R0 122 aa14.53□□□□□ -0.08
VIM-209ENST00000544301 BTF3L4Q96K17 158 aa14.53□□□□□ -0.08
VIM-209ENST00000544301 LY96Q9Y6Y9 160 aa14.53□□□□□ -0.08
VIM-209ENST00000544301 SIAH2O43255 324 aa14.52□□□□□ -0.09
VIM-209ENST00000544301 C8orf88P0DMB2 117 aa14.52□□□□□ -0.09
VIM-209ENST00000544301 DLX1P56177 255 aa14.52□□□□□ -0.09
VIM-209ENST00000544301 ZNF841Q6ZN19 808 aa14.52□□□□□ -0.09
VIM-209ENST00000544301 MUC15Q8N387 334 aa14.52□□□□□ -0.09
VIM-209ENST00000544301 PACRGQ96M98 296 aaPredicted RBP14.52□□□□□ -0.09
VIM-209ENST00000544301 IGHV2-26A0A0B4J1V2 119 aa14.51□□□□□ -0.09
VIM-209ENST00000544301 A0A1W2PPI3 338 aa14.51□□□□□ -0.09
VIM-209ENST00000544301 OR10J4P0C629 311 aa14.51□□□□□ -0.09
VIM-209ENST00000544301 CRYBB3P26998 211 aa14.51□□□□□ -0.09
VIM-209ENST00000544301 TNFRSF14Q92956 283 aa14.51□□□□□ -0.09
VIM-209ENST00000544301 EAF1Q96JC9 268 aaPredicted RBP14.51□□□□□ -0.09
VIM-209ENST00000544301 MRPL32Q9BYC8 188 aaKnown RBP14.51□□□□□ -0.09
VIM-209ENST00000544301 PRSS8Q16651 343 aa14.51□□□□□ -0.09
VIM-209ENST00000544301 NPIPB3Q92617 1050 aa14.51□□□□□ -0.09
VIM-209ENST00000544301 FAM167A-AS1Q96KT0 104 aa14.51□□□□□ -0.09
VIM-209ENST00000544301 DNAJC4Q9NNZ3 241 aa14.51□□□□□ -0.09
VIM-209ENST00000544301 GGTLC3B5MD39 225 aa14.5□□□□□ -0.09
VIM-209ENST00000544301 IGLV1-47P01700 117 aa14.5□□□□□ -0.09
VIM-209ENST00000544301 IGHV3-48P01763 117 aa14.5□□□□□ -0.09
VIM-209ENST00000544301 REG1AP05451 166 aa14.5□□□□□ -0.09
VIM-209ENST00000544301 PDLIM4P50479 330 aa14.5□□□□□ -0.09
VIM-209ENST00000544301 PRB3Q04118 309 aaPredicted RBP14.5□□□□□ -0.09
VIM-209ENST00000544301 MORN5Q5VZ52 161 aa14.5□□□□□ -0.09
VIM-209ENST00000544301 RNF2Q99496 336 aa14.5□□□□□ -0.09
VIM-209ENST00000544301 SLC25A2Q9BXI2 301 aa14.5□□□□□ -0.09
VIM-209ENST00000544301 DMRT1Q9Y5R6 373 aa14.5□□□□□ -0.09
VIM-209ENST00000544301 IGKV1D-37A0A075B6S9 117 aa14.5□□□□□ -0.09
VIM-209ENST00000544301 HELTA6NFD8 242 aa14.5□□□□□ -0.09
VIM-209ENST00000544301 CCL21O00585 134 aa14.5□□□□□ -0.09
VIM-209ENST00000544301 PRRX1P54821 245 aa14.5□□□□□ -0.09
VIM-209ENST00000544301 ZNF672Q499Z4 452 aaPredicted RBP14.5□□□□□ -0.09
VIM-209ENST00000544301 TEX45Q8NA69 505 aa14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms