RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 ZNF257Q9Y2Q1 563 aa15.46■□□□□ 0.07
VIM-203ENST00000469543 CELSR1Q9NYQ6 3014 aa15.46■□□□□ 0.07
VIM-203ENST00000469543 RPL8P62917 257 aaKnown RBP15.46■□□□□ 0.07
VIM-203ENST00000469543 RAB31Q13636 194 aa15.46■□□□□ 0.07
VIM-203ENST00000469543 TMEM249Q2WGJ8 235 aa15.46■□□□□ 0.07
VIM-203ENST00000469543 MRPL36Q9P0J6 103 aaKnown RBP15.46■□□□□ 0.07
VIM-203ENST00000469543 TNFRSF13BO14836 293 aaPredicted RBP15.45■□□□□ 0.06
VIM-203ENST00000469543 LY6HO94772 140 aa15.45■□□□□ 0.06
VIM-203ENST00000469543 C11orf42Q8N5U0 333 aa15.45■□□□□ 0.06
VIM-203ENST00000469543 UHRF2Q96PU4 802 aa15.45■□□□□ 0.06
VIM-203ENST00000469543 NDUFA4L2Q9NRX3 87 aa15.45■□□□□ 0.06
VIM-203ENST00000469543 BET1LQ9NYM9 111 aa15.45■□□□□ 0.06
VIM-203ENST00000469543 ZNF835Q9Y2P0 537 aa15.45■□□□□ 0.06
VIM-203ENST00000469543 F6UZH7 168 aa15.45■□□□□ 0.06
VIM-203ENST00000469543 ENSAO43768 121 aaKnown RBP15.45■□□□□ 0.06
VIM-203ENST00000469543 SLC25A17O43808 307 aa15.45■□□□□ 0.06
VIM-203ENST00000469543 OR7C2O60412 319 aa15.45■□□□□ 0.06
VIM-203ENST00000469543 GGCTO75223 188 aaKnown RBP15.45■□□□□ 0.06
VIM-203ENST00000469543 CRYBB3P26998 211 aa15.45■□□□□ 0.06
VIM-203ENST00000469543 LRRC10Q5BKY1 277 aa15.45■□□□□ 0.06
VIM-203ENST00000469543 TMEM144Q7Z5S9 345 aa15.45■□□□□ 0.06
VIM-203ENST00000469543 IGFBPL1Q8WX77 278 aa15.45■□□□□ 0.06
VIM-203ENST00000469543 FNDC4Q9H6D8 234 aaPredicted RBP15.45■□□□□ 0.06
VIM-203ENST00000469543 RALYQ9UKM9 306 aaKnown RBP15.45■□□□□ 0.06
VIM-203ENST00000469543 ZNF90Q03938 601 aa15.44■□□□□ 0.06
VIM-203ENST00000469543 ZNF430Q9H8G1 570 aaPredicted RBP15.44■□□□□ 0.06
VIM-203ENST00000469543 PITPNC1Q9UKF7 332 aa15.44■□□□□ 0.06
VIM-203ENST00000469543 APOA2P02652 100 aa15.44■□□□□ 0.06
VIM-203ENST00000469543 CNTFRP26992 372 aa15.44■□□□□ 0.06
VIM-203ENST00000469543 MEF2CQ06413 473 aaPredicted RBP15.44■□□□□ 0.06
VIM-203ENST00000469543 CDSNQ15517 529 aa15.44■□□□□ 0.06
VIM-203ENST00000469543 IGHV3-21A0A0B4J1V1 117 aa15.43■□□□□ 0.06
VIM-203ENST00000469543 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP15.43■□□□□ 0.06
VIM-203ENST00000469543 WNK2Q9Y3S1 2297 aa15.43■□□□□ 0.06
VIM-203ENST00000469543 AMBPP02760 352 aa15.43■□□□□ 0.06
VIM-203ENST00000469543 OR5B3Q8NH48 314 aa15.43■□□□□ 0.06
VIM-203ENST00000469543 OSR1Q8TAX0 266 aaPredicted RBP15.43■□□□□ 0.06
VIM-203ENST00000469543 ST6GALNAC6Q969X2 333 aa15.43■□□□□ 0.06
VIM-203ENST00000469543 PRDM13Q9H4Q3 707 aa15.43■□□□□ 0.06
VIM-203ENST00000469543 ELOA3CA0A087WX78 387 aaPredicted RBP15.42■□□□□ 0.06
VIM-203ENST00000469543 C2orf83Q53S99 150 aa15.42■□□□□ 0.06
VIM-203ENST00000469543 HCP5Q6MZN7 132 aa15.42■□□□□ 0.06
VIM-203ENST00000469543 TEX38Q6PEX7 206 aa15.42■□□□□ 0.06
VIM-203ENST00000469543 TMEM183AQ8IXX5 376 aa15.42■□□□□ 0.06
VIM-203ENST00000469543 OR1P1Q8NH06 330 aa15.42■□□□□ 0.06
VIM-203ENST00000469543 FAM90A27PA6NNH2 459 aa15.42■□□□□ 0.06
VIM-203ENST00000469543 SPINK4O60575 86 aa15.42■□□□□ 0.06
VIM-203ENST00000469543 IGLV2-23P01705 113 aa15.42■□□□□ 0.06
VIM-203ENST00000469543 CD69Q07108 199 aa15.42■□□□□ 0.06
VIM-203ENST00000469543 ACTL10Q5JWF8 245 aa15.42■□□□□ 0.06
VIM-203ENST00000469543 OR4C13Q8NGP0 309 aa15.42■□□□□ 0.06
VIM-203ENST00000469543 LINC00479Q96M42 142 aa15.42■□□□□ 0.06
VIM-203ENST00000469543 IMMP2LQ96T52 175 aa15.42■□□□□ 0.06
VIM-203ENST00000469543 IGHV1-69-2A0A0G2JMI3 117 aa15.41■□□□□ 0.06
VIM-203ENST00000469543 SUMO1P63165 101 aaKnown RBP15.41■□□□□ 0.06
VIM-203ENST00000469543 CACNA1BQ00975 2339 aa15.41■□□□□ 0.06
VIM-203ENST00000469543 K7ENP7 123 aa15.41■□□□□ 0.06
VIM-203ENST00000469543 SRP14P37108 136 aaKnown RBP15.41■□□□□ 0.06
VIM-203ENST00000469543 DLX6P56179 175 aa15.41■□□□□ 0.06
VIM-203ENST00000469543 NPIPB3Q92617 1050 aa15.41■□□□□ 0.06
VIM-203ENST00000469543 PRO1933Q9H354 126 aa15.41■□□□□ 0.06
VIM-203ENST00000469543 SSUH2Q9Y2M2 353 aa15.41■□□□□ 0.06
VIM-203ENST00000469543 MDFIC2A0A1B0GVS7 189 aa15.4■□□□□ 0.06
VIM-203ENST00000469543 GGTLC3B5MD39 225 aa15.4■□□□□ 0.06
VIM-203ENST00000469543 NUPR1O60356 82 aa15.4■□□□□ 0.06
VIM-203ENST00000469543 IGHV1-8P0DP01 117 aa15.4■□□□□ 0.06
VIM-203ENST00000469543 TMEM177Q53S58 311 aa15.4■□□□□ 0.06
VIM-203ENST00000469543 KCNIP4Q6PIL6 250 aa15.4■□□□□ 0.06
VIM-203ENST00000469543 NHLRC2Q8NBF2 726 aa15.4■□□□□ 0.06
VIM-203ENST00000469543 SIAH2O43255 324 aa15.4■□□□□ 0.06
VIM-203ENST00000469543 SLC35B1P78383 322 aa15.4■□□□□ 0.06
VIM-203ENST00000469543 TGIF2LXQ8IUE1 241 aa15.4■□□□□ 0.06
VIM-203ENST00000469543 OR1L8Q8NGR8 309 aa15.4■□□□□ 0.06
VIM-203ENST00000469543 FKBP11Q9NYL4 201 aa15.4■□□□□ 0.06
VIM-203ENST00000469543 TRAPPC1Q9Y5R8 145 aa15.4■□□□□ 0.06
VIM-203ENST00000469543 TGOLN2O43493 480 aa15.4■□□□□ 0.06
VIM-203ENST00000469543 PYYP10082 97 aa15.4■□□□□ 0.06
VIM-203ENST00000469543 RPL15P61313 204 aaKnown RBP15.4■□□□□ 0.06
VIM-203ENST00000469543 MRGPRG-AS1Q2M3A8 158 aa15.4■□□□□ 0.06
VIM-203ENST00000469543 UNQ6494/PRO21346Q6UXR6 183 aa15.4■□□□□ 0.06
VIM-203ENST00000469543 PQLC2Q6ZP29 291 aa15.4■□□□□ 0.06
VIM-203ENST00000469543 TMEM256Q8N2U0 113 aa15.4■□□□□ 0.06
VIM-203ENST00000469543 RNASE7Q9H1E1 156 aaKnown RBP15.4■□□□□ 0.06
VIM-203ENST00000469543 GRIFINA4D1Z8 144 aa15.39■□□□□ 0.05
VIM-203ENST00000469543 ERHP84090 104 aaKnown RBP15.39■□□□□ 0.05
VIM-203ENST00000469543 FAM209BQ5JX69 171 aa15.39■□□□□ 0.05
VIM-203ENST00000469543 OR10G8Q8NGN5 311 aa15.39■□□□□ 0.05
VIM-203ENST00000469543 ITPR1Q14643 2758 aa15.39■□□□□ 0.05
VIM-203ENST00000469543 CBLN1P23435 193 aa15.39■□□□□ 0.05
VIM-203ENST00000469543 FXYD3Q14802 87 aa15.39■□□□□ 0.05
VIM-203ENST00000469543 TMEM155Q4W5P6 130 aa15.39■□□□□ 0.05
VIM-203ENST00000469543 EAF1Q96JC9 268 aaPredicted RBP15.39■□□□□ 0.05
VIM-203ENST00000469543 A0A1W2PPI3 338 aa15.38■□□□□ 0.05
VIM-203ENST00000469543 HIST1H1BP16401 226 aaKnown RBP15.38■□□□□ 0.05
VIM-203ENST00000469543 SLC25A33Q9BSK2 321 aa15.38■□□□□ 0.05
VIM-203ENST00000469543 HELTA6NFD8 242 aa15.38■□□□□ 0.05
VIM-203ENST00000469543 TYMSP04818 313 aa15.38■□□□□ 0.05
VIM-203ENST00000469543 FOXL1Q12952 345 aa15.38■□□□□ 0.05
VIM-203ENST00000469543 CENPWQ5EE01 88 aa15.38■□□□□ 0.05
VIM-203ENST00000469543 PFDN5Q99471 154 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 82.4 ms