RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 GPX4P36969 197 aaPredicted RBP7.24□□□□□ -1.25
SYNE1-217ENST00000466159 LCN2P80188 198 aa7.24□□□□□ -1.25
SYNE1-217ENST00000466159 SSBP2P81877 361 aaPredicted RBP7.24□□□□□ -1.25
SYNE1-217ENST00000466159 ERHP84090 104 aaKnown RBP7.24□□□□□ -1.25
SYNE1-217ENST00000466159 PRB3Q04118 309 aaPredicted RBP7.24□□□□□ -1.25
SYNE1-217ENST00000466159 WT1-ASQ06250 92 aa7.24□□□□□ -1.25
SYNE1-217ENST00000466159 FOXL1Q12952 345 aa7.24□□□□□ -1.25
SYNE1-217ENST00000466159 HLA-DRB5Q30154 266 aa7.24□□□□□ -1.25
SYNE1-217ENST00000466159 TEX38Q6PEX7 206 aa7.24□□□□□ -1.25
SYNE1-217ENST00000466159 TMEM186Q96B77 213 aa7.24□□□□□ -1.25
SYNE1-217ENST00000466159 TACC2O95359 2948 aa7.23□□□□□ -1.25
SYNE1-217ENST00000466159 IGHV3-72A0A0B4J1Y9 119 aa7.23□□□□□ -1.25
SYNE1-217ENST00000466159 IGHV1-69-2A0A0G2JMI3 117 aa7.23□□□□□ -1.25
SYNE1-217ENST00000466159 LYNX1G3V0Z9 82 aa7.23□□□□□ -1.25
SYNE1-217ENST00000466159 OR7C2O60412 319 aa7.23□□□□□ -1.25
SYNE1-217ENST00000466159 AMBPP02760 352 aa7.23□□□□□ -1.25
SYNE1-217ENST00000466159 OR10J4P0C629 311 aa7.23□□□□□ -1.25
SYNE1-217ENST00000466159 LYNX1P0DP58 116 aa7.23□□□□□ -1.25
SYNE1-217ENST00000466159 ATP5IP56385 69 aaPredicted RBP7.23□□□□□ -1.25
SYNE1-217ENST00000466159 TMEM155Q4W5P6 130 aa7.23□□□□□ -1.25
SYNE1-217ENST00000466159 C9orf152Q5JTZ5 239 aa7.23□□□□□ -1.25
SYNE1-217ENST00000466159 PDPNQ86YL7 162 aa7.23□□□□□ -1.25
SYNE1-217ENST00000466159 C11orf42Q8N5U0 333 aa7.23□□□□□ -1.25
SYNE1-217ENST00000466159 OR10G8Q8NGN5 311 aa7.23□□□□□ -1.25
SYNE1-217ENST00000466159 TMEM167AQ8TBQ9 72 aa7.23□□□□□ -1.25
SYNE1-217ENST00000466159 ZNF596Q8TC21 504 aa7.23□□□□□ -1.25
SYNE1-217ENST00000466159 C11orf52Q96A22 123 aa7.23□□□□□ -1.25
SYNE1-217ENST00000466159 SLC35E1Q96K37 410 aa7.23□□□□□ -1.25
SYNE1-217ENST00000466159 UHRF2Q96PU4 802 aa7.23□□□□□ -1.25
SYNE1-217ENST00000466159 ZNF430Q9H8G1 570 aaPredicted RBP7.23□□□□□ -1.25
SYNE1-217ENST00000466159 NGBQ9NPG2 151 aa7.23□□□□□ -1.25
SYNE1-217ENST00000466159 TPSG1Q9NRR2 321 aa7.23□□□□□ -1.25
SYNE1-217ENST00000466159 TECRQ9NZ01 308 aaKnown RBP7.23□□□□□ -1.25
SYNE1-217ENST00000466159 MALRD1Q5VYJ5 2156 aa7.23□□□□□ -1.25
SYNE1-217ENST00000466159 TPRP12270 2363 aaKnown RBP7.23□□□□□ -1.25
SYNE1-217ENST00000466159 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP7.23□□□□□ -1.25
SYNE1-217ENST00000466159 SLC17A3O00476 420 aa7.23□□□□□ -1.25
SYNE1-217ENST00000466159 SLC25A17O43808 307 aa7.23□□□□□ -1.25
SYNE1-217ENST00000466159 IGHV1-8P0DP01 117 aa7.23□□□□□ -1.25
SYNE1-217ENST00000466159 CRYBB3P26998 211 aa7.23□□□□□ -1.25
SYNE1-217ENST00000466159 RPL15P61313 204 aaKnown RBP7.23□□□□□ -1.25
SYNE1-217ENST00000466159 MORN5Q5VZ52 161 aa7.23□□□□□ -1.25
SYNE1-217ENST00000466159 SSX8Q7RTT4 187 aa7.23□□□□□ -1.25
SYNE1-217ENST00000466159 TGIF2LXQ8IUE1 241 aa7.23□□□□□ -1.25
SYNE1-217ENST00000466159 LINC00311Q8N616 119 aa7.23□□□□□ -1.25
SYNE1-217ENST00000466159 LINC01560Q8TB33 94 aa7.23□□□□□ -1.25
SYNE1-217ENST00000466159 IMMP2LQ96T52 175 aa7.23□□□□□ -1.25
SYNE1-217ENST00000466159 FNDC4Q9H6D8 234 aaPredicted RBP7.23□□□□□ -1.25
SYNE1-217ENST00000466159 KAAG1Q9UBP8 84 aa7.23□□□□□ -1.25
SYNE1-217ENST00000466159 WASHC3Q9Y3C0 194 aa7.23□□□□□ -1.25
SYNE1-217ENST00000466159 DCHS2Q6V1P9 2916 aa7.22□□□□□ -1.25
SYNE1-217ENST00000466159 TRAV5A0A0B4J249 113 aa7.22□□□□□ -1.25
SYNE1-217ENST00000466159 OR5G3P0C626 314 aa7.22□□□□□ -1.25
SYNE1-217ENST00000466159 AREGP15514 252 aa7.22□□□□□ -1.25
SYNE1-217ENST00000466159 HIST1H1BP16401 226 aaKnown RBP7.22□□□□□ -1.25
SYNE1-217ENST00000466159 APOBEC3AP31941 199 aaPredicted RBP7.22□□□□□ -1.25
SYNE1-217ENST00000466159 OR5I1Q13606 314 aa7.22□□□□□ -1.25
SYNE1-217ENST00000466159 COA6Q5JTJ3 125 aaKnown RBP7.22□□□□□ -1.25
SYNE1-217ENST00000466159 EAF1Q96JC9 268 aaPredicted RBP7.22□□□□□ -1.25
SYNE1-217ENST00000466159 PFDN5Q99471 154 aa7.22□□□□□ -1.25
SYNE1-217ENST00000466159 PRDM13Q9H4Q3 707 aa7.22□□□□□ -1.25
SYNE1-217ENST00000466159 TMEM167BQ9NRX6 74 aa7.22□□□□□ -1.25
SYNE1-217ENST00000466159 TRAPPC1Q9Y5R8 145 aa7.22□□□□□ -1.25
SYNE1-217ENST00000466159 ABCA4P78363 2273 aa7.22□□□□□ -1.25
SYNE1-217ENST00000466159 ZZEF1O43149 2961 aa7.22□□□□□ -1.25
SYNE1-217ENST00000466159 ENSAO43768 121 aaKnown RBP7.22□□□□□ -1.25
SYNE1-217ENST00000466159 REG1AP05451 166 aa7.22□□□□□ -1.25
SYNE1-217ENST00000466159 RBPJQ06330 500 aa7.22□□□□□ -1.25
SYNE1-217ENST00000466159 FAM71F2Q6NXP2 309 aa7.22□□□□□ -1.25
SYNE1-217ENST00000466159 C8orf31Q8N9H6 132 aa7.22□□□□□ -1.25
SYNE1-217ENST00000466159 VSTM2AQ8TAG5 236 aa7.22□□□□□ -1.25
SYNE1-217ENST00000466159 CACNG8Q8WXS5 425 aa7.22□□□□□ -1.25
SYNE1-217ENST00000466159 VKORC1Q9BQB6 163 aa7.22□□□□□ -1.25
SYNE1-217ENST00000466159 SLC25A33Q9BSK2 321 aa7.22□□□□□ -1.25
SYNE1-217ENST00000466159 SPTA1P02549 2419 aa7.22□□□□□ -1.25
SYNE1-217ENST00000466159 A0A087X0M5 115 aa7.21□□□□□ -1.25
SYNE1-217ENST00000466159 A0A1B0GX30 115 aa7.21□□□□□ -1.25
SYNE1-217ENST00000466159 A0A1W2PN81 502 aa7.21□□□□□ -1.25
SYNE1-217ENST00000466159 PSMB11A5LHX3 300 aa7.21□□□□□ -1.25
SYNE1-217ENST00000466159 GGTLC3B5MD39 225 aa7.21□□□□□ -1.25
SYNE1-217ENST00000466159 C9JCJ5 164 aa7.21□□□□□ -1.25
SYNE1-217ENST00000466159 INS-IGF2F8WCM5 200 aa7.21□□□□□ -1.25
SYNE1-217ENST00000466159 CD3EP07766 207 aa7.21□□□□□ -1.25
SYNE1-217ENST00000466159 GRNP28799 593 aaKnown RBP7.21□□□□□ -1.25
SYNE1-217ENST00000466159 PDLIM4P50479 330 aa7.21□□□□□ -1.25
SYNE1-217ENST00000466159 ZNF137PP52743 207 aa7.21□□□□□ -1.25
SYNE1-217ENST00000466159 SUMO1P63165 101 aaKnown RBP7.21□□□□□ -1.25
SYNE1-217ENST00000466159 ZNF90Q03938 601 aa7.21□□□□□ -1.25
SYNE1-217ENST00000466159 MRGPRG-AS1Q2M3A8 158 aa7.21□□□□□ -1.25
SYNE1-217ENST00000466159 PQLC2Q6ZP29 291 aa7.21□□□□□ -1.25
SYNE1-217ENST00000466159 OR4A5Q8NH83 315 aa7.21□□□□□ -1.25
SYNE1-217ENST00000466159 NPIPB3Q92617 1050 aa7.21□□□□□ -1.25
SYNE1-217ENST00000466159 MRPL36Q9P0J6 103 aaKnown RBP7.21□□□□□ -1.25
SYNE1-217ENST00000466159 A0A1W2PPI3 338 aa7.21□□□□□ -1.26
SYNE1-217ENST00000466159 HELTA6NFD8 242 aa7.21□□□□□ -1.26
SYNE1-217ENST00000466159 C8orf88P0DMB2 117 aa7.21□□□□□ -1.26
SYNE1-217ENST00000466159 CNN1P51911 297 aaKnown RBP7.21□□□□□ -1.26
SYNE1-217ENST00000466159 CENPWQ5EE01 88 aa7.21□□□□□ -1.26
SYNE1-217ENST00000466159 RUSC1-AS1Q66K80 236 aa7.21□□□□□ -1.26
SYNE1-217ENST00000466159 PNKDQ8N490 385 aa7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms