RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 FAM57AQ8TBR7 257 aa11.72□□□□□ -0.53
CSPG4-201ENST00000308508 JMJD8Q96S16 334 aa11.72□□□□□ -0.53
CSPG4-201ENST00000308508 MORN3Q6PF18 240 aaPredicted RBP11.72□□□□□ -0.53
CSPG4-201ENST00000308508 MIR17HGQ75NE6 70 aa11.72□□□□□ -0.53
CSPG4-201ENST00000308508 MRPL52Q86TS9 123 aaKnown RBP11.72□□□□□ -0.53
CSPG4-201ENST00000308508 ZNF501Q96CX3 271 aaPredicted RBP11.72□□□□□ -0.53
CSPG4-201ENST00000308508 LY6EQ16553 131 aa11.72□□□□□ -0.53
CSPG4-201ENST00000308508 IGKV1-8A0A0C4DH67 115 aa11.71□□□□□ -0.53
CSPG4-201ENST00000308508 C1QL4Q86Z23 238 aa11.71□□□□□ -0.53
CSPG4-201ENST00000308508 RNF222A6NCQ9 220 aa11.71□□□□□ -0.53
CSPG4-201ENST00000308508 C1QCP02747 245 aa11.71□□□□□ -0.53
CSPG4-201ENST00000308508 TMPRSS3P57727 454 aa11.71□□□□□ -0.53
CSPG4-201ENST00000308508 IGKV3D-20A0A0C4DH25 116 aa11.71□□□□□ -0.53
CSPG4-201ENST00000308508 A6NNC1 897 aa11.71□□□□□ -0.53
CSPG4-201ENST00000308508 TMEM54Q969K7 222 aa11.71□□□□□ -0.53
CSPG4-201ENST00000308508 OVOL2Q9BRP0 275 aa11.71□□□□□ -0.53
CSPG4-201ENST00000308508 SEPSECSQ9HD40 501 aaKnown RBP11.71□□□□□ -0.53
CSPG4-201ENST00000308508 C21orf62Q9NYP8 219 aa11.71□□□□□ -0.53
CSPG4-201ENST00000308508 TNFRSF6BO95407 300 aa11.71□□□□□ -0.53
CSPG4-201ENST00000308508 RNF115Q9Y4L5 304 aa11.71□□□□□ -0.53
CSPG4-201ENST00000308508 ZNF525Q8N782 197 aa11.71□□□□□ -0.54
CSPG4-201ENST00000308508 IGHV1-69-2A0A0G2JMI3 117 aa11.71□□□□□ -0.54
CSPG4-201ENST00000308508 DLX4Q92988 240 aaPredicted RBP11.71□□□□□ -0.54
CSPG4-201ENST00000308508 ZNF703Q9H7S9 590 aaPredicted RBP11.71□□□□□ -0.54
CSPG4-201ENST00000308508 IGHV3-35A0A0C4DH35 117 aa11.71□□□□□ -0.54
CSPG4-201ENST00000308508 F2Z2F3 143 aa11.71□□□□□ -0.54
CSPG4-201ENST00000308508 EGR4Q05215 589 aa11.71□□□□□ -0.54
CSPG4-201ENST00000308508 C9orf50Q5SZB4 431 aa11.71□□□□□ -0.54
CSPG4-201ENST00000308508 IGHV3-66A0A0C4DH42 116 aa11.7□□□□□ -0.54
CSPG4-201ENST00000308508 PF4P02776 101 aa11.7□□□□□ -0.54
CSPG4-201ENST00000308508 PRSS53Q2L4Q9 553 aa11.7□□□□□ -0.54
CSPG4-201ENST00000308508 ACP7Q6ZNF0 438 aa11.7□□□□□ -0.54
CSPG4-201ENST00000308508 IFI27L1Q96BM0 104 aa11.7□□□□□ -0.54
CSPG4-201ENST00000308508 PILRBQ9UKJ0 227 aa11.7□□□□□ -0.54
CSPG4-201ENST00000308508 DLEU1O43261 78 aa11.7□□□□□ -0.54
CSPG4-201ENST00000308508 LINC01590Q5TEZ4 76 aa11.7□□□□□ -0.54
CSPG4-201ENST00000308508 TMEM190Q8WZ59 177 aa11.7□□□□□ -0.54
CSPG4-201ENST00000308508 FBXL7Q9UJT9 491 aa11.7□□□□□ -0.54
CSPG4-201ENST00000308508 TRAV14DV4A0A0A6YYC5 116 aa11.7□□□□□ -0.54
CSPG4-201ENST00000308508 LINC01587Q99440 93 aa11.7□□□□□ -0.54
CSPG4-201ENST00000308508 HS3ST3B1Q9Y662 390 aa11.7□□□□□ -0.54
CSPG4-201ENST00000308508 NACAE9PAV3 2078 aa11.7□□□□□ -0.54
CSPG4-201ENST00000308508 UCNP55089 124 aa11.7□□□□□ -0.54
CSPG4-201ENST00000308508 FOXH1O75593 365 aa11.7□□□□□ -0.54
CSPG4-201ENST00000308508 NAPSAO96009 420 aa11.7□□□□□ -0.54
CSPG4-201ENST00000308508 HIST3H2BBQ8N257 126 aa11.7□□□□□ -0.54
CSPG4-201ENST00000308508 EPDR1Q9UM22 224 aa11.69□□□□□ -0.54
CSPG4-201ENST00000308508 IGKV1D-42A0A075B6H8 117 aa11.69□□□□□ -0.54
CSPG4-201ENST00000308508 ASCL4Q6XD76 172 aa11.69□□□□□ -0.54
CSPG4-201ENST00000308508 ITLN2Q8WWU7 325 aaPredicted RBP11.69□□□□□ -0.54
CSPG4-201ENST00000308508 ARPC1AQ92747 370 aa11.69□□□□□ -0.54
CSPG4-201ENST00000308508 TRGV2A0A075B6R0 118 aa11.69□□□□□ -0.54
CSPG4-201ENST00000308508 MRPL20Q9BYC9 149 aaKnown RBP11.69□□□□□ -0.54
CSPG4-201ENST00000308508 COX11Q9Y6N1 276 aa11.69□□□□□ -0.54
CSPG4-201ENST00000308508 HAX1O00165 279 aa11.69□□□□□ -0.54
CSPG4-201ENST00000308508 GZMBP10144 247 aa11.69□□□□□ -0.54
CSPG4-201ENST00000308508 LAGE3Q14657 143 aa11.69□□□□□ -0.54
CSPG4-201ENST00000308508 OCIAD2Q56VL3 154 aa11.69□□□□□ -0.54
CSPG4-201ENST00000308508 C18orf12Q96KH6 178 aa11.69□□□□□ -0.54
CSPG4-201ENST00000308508 IGHV3OR16-13A0A075B7E8 117 aa11.69□□□□□ -0.54
CSPG4-201ENST00000308508 IGHV3-74A0A0B4J1X5 117 aa11.69□□□□□ -0.54
CSPG4-201ENST00000308508 FAM89BQ8N5H3 189 aa11.69□□□□□ -0.54
CSPG4-201ENST00000308508 SLC50A1Q9BRV3 221 aa11.69□□□□□ -0.54
CSPG4-201ENST00000308508 IGHV3-23P01764 117 aa11.69□□□□□ -0.54
CSPG4-201ENST00000308508 CD7P09564 240 aa11.69□□□□□ -0.54
CSPG4-201ENST00000308508 CFHR5Q9BXR6 569 aa11.69□□□□□ -0.54
CSPG4-201ENST00000308508 PILRAQ9UKJ1 303 aa11.69□□□□□ -0.54
CSPG4-201ENST00000308508 CD28P10747 220 aa11.69□□□□□ -0.54
CSPG4-201ENST00000308508 TMEM144Q7Z5S9 345 aa11.69□□□□□ -0.54
CSPG4-201ENST00000308508 AHDC1Q5TGY3 1603 aaPredicted RBP11.68□□□□□ -0.54
CSPG4-201ENST00000308508 F8VVB4 439 aa11.68□□□□□ -0.54
CSPG4-201ENST00000308508 F8VWA3 439 aa11.68□□□□□ -0.54
CSPG4-201ENST00000308508 PAPPAQ13219 1627 aa11.68□□□□□ -0.54
CSPG4-201ENST00000308508 SIPA1L3O60292 1781 aaPredicted RBP11.68□□□□□ -0.54
CSPG4-201ENST00000308508 COX6B1P14854 86 aa11.68□□□□□ -0.54
CSPG4-201ENST00000308508 C1orf194Q5T5A4 169 aa11.68□□□□□ -0.54
CSPG4-201ENST00000308508 TPTE2P1Q5T6R2 138 aa11.68□□□□□ -0.54
CSPG4-201ENST00000308508 RTN4RL2Q86UN3 420 aa11.68□□□□□ -0.54
CSPG4-201ENST00000308508 CRYBA2P53672 197 aa11.68□□□□□ -0.54
CSPG4-201ENST00000308508 RASL11AQ6T310 242 aa11.68□□□□□ -0.54
CSPG4-201ENST00000308508 ZNRF1Q8ND25 227 aa11.68□□□□□ -0.54
CSPG4-201ENST00000308508 TOMM40O96008 361 aa11.68□□□□□ -0.54
CSPG4-201ENST00000308508 C1QTNF9P0C862 333 aa11.68□□□□□ -0.54
CSPG4-201ENST00000308508 INTS1Q8N201 2190 aaKnown RBP11.68□□□□□ -0.54
CSPG4-201ENST00000308508 IGHV3-49A0A0A0MS15 119 aa11.68□□□□□ -0.54
CSPG4-201ENST00000308508 B9A039 149 aa11.68□□□□□ -0.54
CSPG4-201ENST00000308508 GTSF1LQ9H1H1 148 aa11.68□□□□□ -0.54
CSPG4-201ENST00000308508 C17orf98A8MV24 154 aa11.67□□□□□ -0.54
CSPG4-201ENST00000308508 PRTN3P24158 256 aa11.67□□□□□ -0.54
CSPG4-201ENST00000308508 TDGF1P3P51864 188 aa11.67□□□□□ -0.54
CSPG4-201ENST00000308508 TSKUQ8WUA8 353 aa11.67□□□□□ -0.54
CSPG4-201ENST00000308508 TRPM3Q9HCF6 1732 aaPredicted RBP11.67□□□□□ -0.54
CSPG4-201ENST00000308508 ZNF48Q96MX3 618 aaPredicted RBP11.67□□□□□ -0.54
CSPG4-201ENST00000308508 WFDC6Q9BQY6 131 aa11.67□□□□□ -0.54
CSPG4-201ENST00000308508 FOXD3Q9UJU5 478 aaPredicted RBP11.67□□□□□ -0.54
CSPG4-201ENST00000308508 SPTBN1Q01082 2364 aaKnown RBP11.67□□□□□ -0.54
CSPG4-201ENST00000308508 SRXN1Q9BYN0 137 aa11.67□□□□□ -0.54
CSPG4-201ENST00000308508 A0A1W2PRE2 83 aa11.67□□□□□ -0.54
CSPG4-201ENST00000308508 OR10W1Q8NGF6 305 aa11.67□□□□□ -0.54
CSPG4-201ENST00000308508 MARF1Q9Y4F3 1742 aaKnown RBP11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms