RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 FCN1O00602 326 aa8.68□□□□□ -1.02
USP28-201ENST00000003302 OR7C2O60412 319 aa8.68□□□□□ -1.02
USP28-201ENST00000003302 SRP14P37108 136 aaKnown RBP8.68□□□□□ -1.02
USP28-201ENST00000003302 GPR6P46095 362 aaPredicted RBP8.68□□□□□ -1.02
USP28-201ENST00000003302 SLAQ13239 276 aa8.68□□□□□ -1.02
USP28-201ENST00000003302 BATFQ16520 125 aa8.68□□□□□ -1.02
USP28-201ENST00000003302 LEMD1Q68G75 181 aa8.68□□□□□ -1.02
USP28-201ENST00000003302 OR1L6Q8NGR2 347 aa8.68□□□□□ -1.02
USP28-201ENST00000003302 WNT10AQ9GZT5 417 aa8.68□□□□□ -1.02
USP28-201ENST00000003302 M0R296 226 aa8.68□□□□□ -1.02
USP28-201ENST00000003302 SAA1P0DJI8 122 aaPredicted RBP8.68□□□□□ -1.02
USP28-201ENST00000003302 NUTF2P61970 127 aaKnown RBP8.68□□□□□ -1.02
USP28-201ENST00000003302 FOXL1Q12952 345 aa8.68□□□□□ -1.02
USP28-201ENST00000003302 TEPPQ6URK8 271 aa8.68□□□□□ -1.02
USP28-201ENST00000003302 BHLHA15Q7RTS1 189 aaPredicted RBP8.68□□□□□ -1.02
USP28-201ENST00000003302 RAB1CQ92928 201 aa8.68□□□□□ -1.02
USP28-201ENST00000003302 NPVFQ9HCQ7 196 aa8.68□□□□□ -1.02
USP28-201ENST00000003302 PLSCR4Q9NRQ2 329 aa8.68□□□□□ -1.02
USP28-201ENST00000003302 C17orf112F2Z3M2 114 aa8.68□□□□□ -1.02
USP28-201ENST00000003302 TCAPO15273 167 aa8.68□□□□□ -1.02
USP28-201ENST00000003302 PDE6DO43924 150 aa8.68□□□□□ -1.02
USP28-201ENST00000003302 LINC00322Q6ZN03 302 aaPredicted RBP8.68□□□□□ -1.02
USP28-201ENST00000003302 SPATA12Q7Z6I5 190 aa8.68□□□□□ -1.02
USP28-201ENST00000003302 CMTM2Q8TAZ6 248 aa8.68□□□□□ -1.02
USP28-201ENST00000003302 OR51B2Q9Y5P1 312 aa8.68□□□□□ -1.02
USP28-201ENST00000003302 A8MXE2 369 aa8.68□□□□□ -1.02
USP28-201ENST00000003302 F2RL2O00254 374 aa8.68□□□□□ -1.02
USP28-201ENST00000003302 MGST3O14880 152 aa8.68□□□□□ -1.02
USP28-201ENST00000003302 MRPS11P82912 194 aaKnown RBP8.68□□□□□ -1.02
USP28-201ENST00000003302 MBNL2Q5VZF2 373 aaKnown RBP8.68□□□□□ -1.02
USP28-201ENST00000003302 GAFA1Q96PS6 74 aa8.68□□□□□ -1.02
USP28-201ENST00000003302 MCRIP2Q9BUT9 160 aaKnown RBP8.68□□□□□ -1.02
USP28-201ENST00000003302 J3QR06 171 aa8.67□□□□□ -1.02
USP28-201ENST00000003302 IGHV1-46P01743 117 aa8.67□□□□□ -1.02
USP28-201ENST00000003302 ADH4P08319 380 aa8.67□□□□□ -1.02
USP28-201ENST00000003302 ZNF883P0CG24 379 aa8.67□□□□□ -1.02
USP28-201ENST00000003302 LYPD2Q6UXB3 125 aa8.67□□□□□ -1.02
USP28-201ENST00000003302 OR52E5Q8NH55 327 aa8.67□□□□□ -1.02
USP28-201ENST00000003302 NEUROG1Q92886 237 aa8.67□□□□□ -1.02
USP28-201ENST00000003302 MRPL20Q9BYC9 149 aaKnown RBP8.67□□□□□ -1.02
USP28-201ENST00000003302 AKAP9Q99996 3911 aa8.67□□□□□ -1.02
USP28-201ENST00000003302 CXorf1O96002 111 aa8.67□□□□□ -1.02
USP28-201ENST00000003302 TMPRSS3P57727 454 aa8.67□□□□□ -1.02
USP28-201ENST00000003302 WT1-ASQ06250 92 aa8.67□□□□□ -1.02
USP28-201ENST00000003302 ZNF705AQ6ZN79 300 aaPredicted RBP8.67□□□□□ -1.02
USP28-201ENST00000003302 TMEM106BQ9NUM4 274 aa8.67□□□□□ -1.02
USP28-201ENST00000003302 JPT1Q9UK76 154 aa8.67□□□□□ -1.02
USP28-201ENST00000003302 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.67□□□□□ -1.02
USP28-201ENST00000003302 TEX50A0A1B0GTY4 177 aa8.67□□□□□ -1.02
USP28-201ENST00000003302 YPEL3P61236 119 aaPredicted RBP8.67□□□□□ -1.02
USP28-201ENST00000003302 PMCHL1Q16048 86 aa8.67□□□□□ -1.02
USP28-201ENST00000003302 PATE2Q6UY27 113 aa8.67□□□□□ -1.02
USP28-201ENST00000003302 KIR2DL5BA0A0G2JN68 375 aa8.66□□□□□ -1.02
USP28-201ENST00000003302 KIR2DL5BA0A0G2JPC4 375 aa8.66□□□□□ -1.02
USP28-201ENST00000003302 CNTFRP26992 372 aa8.66□□□□□ -1.02
USP28-201ENST00000003302 KIR2DL5AQ8N109 375 aa8.66□□□□□ -1.02
USP28-201ENST00000003302 TECRQ9NZ01 308 aaKnown RBP8.66□□□□□ -1.02
USP28-201ENST00000003302 SLC45A2Q9UMX9 530 aa8.66□□□□□ -1.02
USP28-201ENST00000003302 FLNCQ14315 2725 aa8.66□□□□□ -1.02
USP28-201ENST00000003302 KBTBD11-OT1A0A1B0GTJ5 212 aa8.66□□□□□ -1.02
USP28-201ENST00000003302 TOX4O94842 621 aa8.66□□□□□ -1.02
USP28-201ENST00000003302 GCGP01275 180 aa8.66□□□□□ -1.02
USP28-201ENST00000003302 MGST1P10620 155 aaKnown RBP8.66□□□□□ -1.02
USP28-201ENST00000003302 PMCHP20382 165 aa8.66□□□□□ -1.02
USP28-201ENST00000003302 KCNIP4Q6PIL6 250 aa8.66□□□□□ -1.02
USP28-201ENST00000003302 PRR33A8MZF0 331 aa8.66□□□□□ -1.02
USP28-201ENST00000003302 CRISP2P16562 243 aa8.66□□□□□ -1.02
USP28-201ENST00000003302 HSPE1P61604 102 aaKnown RBP8.66□□□□□ -1.02
USP28-201ENST00000003302 LCN2P80188 198 aa8.66□□□□□ -1.02
USP28-201ENST00000003302 ZNF124Q15973 351 aa8.66□□□□□ -1.02
USP28-201ENST00000003302 FAM167A-AS1Q96KT0 104 aa8.66□□□□□ -1.02
USP28-201ENST00000003302 ZNF355PQ9NSJ1 428 aa8.66□□□□□ -1.02
USP28-201ENST00000003302 TP53TG5Q9Y2B4 290 aa8.66□□□□□ -1.02
USP28-201ENST00000003302 BMPR1BO00238 502 aa8.66□□□□□ -1.02
USP28-201ENST00000003302 MOSP00540 346 aa8.66□□□□□ -1.02
USP28-201ENST00000003302 TDGF1P3P51864 188 aa8.66□□□□□ -1.02
USP28-201ENST00000003302 C1orf194Q5T5A4 169 aa8.66□□□□□ -1.02
USP28-201ENST00000003302 PRR27Q6MZM9 219 aa8.66□□□□□ -1.02
USP28-201ENST00000003302 RYDENQ9NUL5 291 aaKnown RBP8.66□□□□□ -1.02
USP28-201ENST00000003302 IL36BQ9NZH7 164 aa8.66□□□□□ -1.02
USP28-201ENST00000003302 FBLN7Q53RD9 439 aa8.65□□□□□ -1.02
USP28-201ENST00000003302 ERASQ7Z444 233 aa8.65□□□□□ -1.02
USP28-201ENST00000003302 PSMB11A5LHX3 300 aa8.65□□□□□ -1.02
USP28-201ENST00000003302 FTH1P19P0C7X4 201 aa8.65□□□□□ -1.02
USP28-201ENST00000003302 KRTDAPP60985 99 aa8.65□□□□□ -1.02
USP28-201ENST00000003302 ERVK-16P61578 105 aa8.65□□□□□ -1.02
USP28-201ENST00000003302 FOXE3Q13461 319 aa8.65□□□□□ -1.02
USP28-201ENST00000003302 CR1LQ2VPA4 569 aa8.65□□□□□ -1.02
USP28-201ENST00000003302 J3QW42 95 aa8.65□□□□□ -1.03
USP28-201ENST00000003302 STUMQ69YW2 141 aa8.65□□□□□ -1.03
USP28-201ENST00000003302 PROCRQ9UNN8 238 aa8.65□□□□□ -1.03
USP28-201ENST00000003302 A0A1B0GWJ7 208 aa8.65□□□□□ -1.03
USP28-201ENST00000003302 LYNX1G3V0Z9 82 aa8.65□□□□□ -1.03
USP28-201ENST00000003302 ISLRO14498 428 aa8.65□□□□□ -1.03
USP28-201ENST00000003302 LYNX1P0DP58 116 aa8.65□□□□□ -1.03
USP28-201ENST00000003302 RNASE2P10153 161 aaKnown RBP8.65□□□□□ -1.03
USP28-201ENST00000003302 NAT8BQ9UHF3 227 aa8.65□□□□□ -1.03
USP28-201ENST00000003302 TBL2Q9Y4P3 447 aaKnown RBP8.65□□□□□ -1.03
USP28-201ENST00000003302 RAB4AP20338 218 aa8.64□□□□□ -1.03
USP28-201ENST00000003302 SRIP30626 198 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 86.3 ms