RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 ENSAO43768 121 aaKnown RBP11.95□□□□□ -0.5
VPS35-210ENST00000568784 SELENOVP59797 346 aa11.95□□□□□ -0.5
VPS35-210ENST00000568784 Q6ZT83 130 aa11.95□□□□□ -0.5
VPS35-210ENST00000568784 TMEM144Q7Z5S9 345 aa11.95□□□□□ -0.5
VPS35-210ENST00000568784 RBMXL3Q8N7X1 1067 aaKnown RBP11.95□□□□□ -0.5
VPS35-210ENST00000568784 SSBP4Q9BWG4 385 aaPredicted RBP11.95□□□□□ -0.5
VPS35-210ENST00000568784 SAA2-SAA4A0A096LPE2 208 aa11.95□□□□□ -0.5
VPS35-210ENST00000568784 C21orf140B9A014 251 aa11.95□□□□□ -0.5
VPS35-210ENST00000568784 SAA2P0DJI9 122 aaPredicted RBP11.95□□□□□ -0.5
VPS35-210ENST00000568784 TAS2R45P59539 299 aa11.95□□□□□ -0.5
VPS35-210ENST00000568784 C9orf106Q8NAJ2 232 aa11.95□□□□□ -0.5
VPS35-210ENST00000568784 OR10W1Q8NGF6 305 aa11.95□□□□□ -0.5
VPS35-210ENST00000568784 PROCRQ9UNN8 238 aa11.95□□□□□ -0.5
VPS35-210ENST00000568784 KMT2EQ8IZD2 1858 aa11.95□□□□□ -0.5
VPS35-210ENST00000568784 TCTEX1D1Q8N7M0 179 aa11.95□□□□□ -0.5
VPS35-210ENST00000568784 AHRRA9YTQ3 701 aa11.94□□□□□ -0.5
VPS35-210ENST00000568784 ACP1P24666 158 aa11.94□□□□□ -0.5
VPS35-210ENST00000568784 OR2D3Q8NGH3 330 aa11.94□□□□□ -0.5
VPS35-210ENST00000568784 ST6GALNAC6Q969X2 333 aa11.94□□□□□ -0.5
VPS35-210ENST00000568784 SLC35E1Q96K37 410 aa11.94□□□□□ -0.5
VPS35-210ENST00000568784 IGKV1D-17A0A075B6S4 117 aa11.94□□□□□ -0.5
VPS35-210ENST00000568784 M0QZK8 103 aa11.94□□□□□ -0.5
VPS35-210ENST00000568784 COX7A2P2O60397 106 aa11.94□□□□□ -0.5
VPS35-210ENST00000568784 TNFSF13O75888 250 aa11.94□□□□□ -0.5
VPS35-210ENST00000568784 APCSP02743 223 aa11.94□□□□□ -0.5
VPS35-210ENST00000568784 ORM2P19652 201 aa11.94□□□□□ -0.5
VPS35-210ENST00000568784 OR5B3Q8NH48 314 aa11.94□□□□□ -0.5
VPS35-210ENST00000568784 RCHY1Q96PM5 261 aa11.94□□□□□ -0.5
VPS35-210ENST00000568784 TMEM167BQ9NRX6 74 aa11.94□□□□□ -0.5
VPS35-210ENST00000568784 SPTAN1Q13813 2472 aaKnown RBP11.94□□□□□ -0.5
VPS35-210ENST00000568784 RAB7AP51149 207 aa11.94□□□□□ -0.5
VPS35-210ENST00000568784 SPRNQ5BIV9 151 aa11.94□□□□□ -0.5
VPS35-210ENST00000568784 Q6ZVH6 145 aa11.94□□□□□ -0.5
VPS35-210ENST00000568784 A0A1W2PNU3 283 aaPredicted RBP11.93□□□□□ -0.5
VPS35-210ENST00000568784 DLEU1O43261 78 aa11.93□□□□□ -0.5
VPS35-210ENST00000568784 P0C879 139 aa11.93□□□□□ -0.5
VPS35-210ENST00000568784 CORO2AQ92828 525 aa11.93□□□□□ -0.5
VPS35-210ENST00000568784 SNRNP40Q96DI7 357 aaKnown RBP11.93□□□□□ -0.5
VPS35-210ENST00000568784 JPT1Q9UK76 154 aa11.93□□□□□ -0.5
VPS35-210ENST00000568784 REG1AP05451 166 aa11.93□□□□□ -0.5
VPS35-210ENST00000568784 PYYP10082 97 aa11.93□□□□□ -0.5
VPS35-210ENST00000568784 CHRNB4P30926 498 aa11.93□□□□□ -0.5
VPS35-210ENST00000568784 IGHV2OR16-5A0A0B4J2B6 119 aa11.93□□□□□ -0.5
VPS35-210ENST00000568784 ZNF137PP52743 207 aa11.93□□□□□ -0.5
VPS35-210ENST00000568784 FOXA3P55318 350 aaPredicted RBP11.93□□□□□ -0.5
VPS35-210ENST00000568784 UBE2G1P62253 170 aa11.93□□□□□ -0.5
VPS35-210ENST00000568784 RTL8BQ17RB0 113 aa11.93□□□□□ -0.5
VPS35-210ENST00000568784 COL5A1-AS1Q5SY13 56 aa11.93□□□□□ -0.5
VPS35-210ENST00000568784 FAM216BQ8N7L0 139 aa11.93□□□□□ -0.5
VPS35-210ENST00000568784 OR2T6Q8NHC8 308 aa11.93□□□□□ -0.5
VPS35-210ENST00000568784 RAB1CQ92928 201 aa11.93□□□□□ -0.5
VPS35-210ENST00000568784 TXNDC17Q9BRA2 123 aa11.93□□□□□ -0.5
VPS35-210ENST00000568784 TANC2Q9HCD6 1990 aa11.92□□□□□ -0.5
VPS35-210ENST00000568784 M0R2Z0 102 aa11.92□□□□□ -0.5
VPS35-210ENST00000568784 RAB4AP20338 218 aa11.92□□□□□ -0.5
VPS35-210ENST00000568784 VDAC2P45880 294 aaPredicted RBP11.92□□□□□ -0.5
VPS35-210ENST00000568784 MZT1Q08AG7 82 aa11.92□□□□□ -0.5
VPS35-210ENST00000568784 RNF151Q2KHN1 245 aa11.92□□□□□ -0.5
VPS35-210ENST00000568784 STUMQ69YW2 141 aa11.92□□□□□ -0.5
VPS35-210ENST00000568784 ZCCHC24Q8N2G6 241 aaKnown RBP11.92□□□□□ -0.5
VPS35-210ENST00000568784 LPAR2Q9HBW0 351 aa11.92□□□□□ -0.5
VPS35-210ENST00000568784 DNAJC4Q9NNZ3 241 aa11.92□□□□□ -0.5
VPS35-210ENST00000568784 PTTG1IPP53801 180 aa11.92□□□□□ -0.5
VPS35-210ENST00000568784 LGALS4P56470 323 aa11.92□□□□□ -0.5
VPS35-210ENST00000568784 CCL8P80075 99 aa11.92□□□□□ -0.5
VPS35-210ENST00000568784 CT45A1Q5HYN5 189 aa11.92□□□□□ -0.5
VPS35-210ENST00000568784 TPTE2P1Q5T6R2 138 aa11.92□□□□□ -0.5
VPS35-210ENST00000568784 WDR73Q6P4I2 378 aa11.92□□□□□ -0.5
VPS35-210ENST00000568784 CT45A3Q8NHU0 189 aa11.92□□□□□ -0.5
VPS35-210ENST00000568784 TPPP3Q9BW30 176 aa11.92□□□□□ -0.5
VPS35-210ENST00000568784 TECTAO75443 2155 aa11.92□□□□□ -0.5
VPS35-210ENST00000568784 C15orf61A6NNL5 157 aa11.92□□□□□ -0.5
VPS35-210ENST00000568784 LINC00869P0C866 280 aa11.92□□□□□ -0.5
VPS35-210ENST00000568784 FDCSPQ8NFU4 85 aa11.92□□□□□ -0.5
VPS35-210ENST00000568784 HARBI1Q96MB7 349 aa11.92□□□□□ -0.5
VPS35-210ENST00000568784 IFI27L2Q9H2X8 130 aa11.92□□□□□ -0.5
VPS35-210ENST00000568784 TP53TG3Q9ULZ0 132 aa11.92□□□□□ -0.5
VPS35-210ENST00000568784 ARL2-SNX15V9GYD0 113 aa11.92□□□□□ -0.5
VPS35-210ENST00000568784 BOD1L1Q8NFC6 3051 aa11.92□□□□□ -0.5
VPS35-210ENST00000568784 IGKV1-16P04430 117 aa11.91□□□□□ -0.5
VPS35-210ENST00000568784 KLF3P57682 345 aaPredicted RBP11.91□□□□□ -0.5
VPS35-210ENST00000568784 PRB3Q04118 309 aaPredicted RBP11.91□□□□□ -0.5
VPS35-210ENST00000568784 GCSAMQ8N6F7 178 aa11.91□□□□□ -0.5
VPS35-210ENST00000568784 TNRC6AQ8NDV7 1962 aaKnown RBP11.91□□□□□ -0.5
VPS35-210ENST00000568784 LOC400499M0QZD8 3231 aa11.91□□□□□ -0.5
VPS35-210ENST00000568784 IGHV3-72A0A0B4J1Y9 119 aa11.91□□□□□ -0.5
VPS35-210ENST00000568784 KIR2DL5BA0A0G2JN68 375 aa11.91□□□□□ -0.5
VPS35-210ENST00000568784 KIR2DL5BA0A0G2JPC4 375 aa11.91□□□□□ -0.5
VPS35-210ENST00000568784 DPRXA6NFQ7 191 aa11.91□□□□□ -0.5
VPS35-210ENST00000568784 C15orf65H3BRN8 121 aa11.91□□□□□ -0.5
VPS35-210ENST00000568784 VWC2Q2TAL6 325 aa11.91□□□□□ -0.5
VPS35-210ENST00000568784 MAJINQ3KP22 176 aa11.91□□□□□ -0.5
VPS35-210ENST00000568784 KIR2DL5AQ8N109 375 aa11.91□□□□□ -0.5
VPS35-210ENST00000568784 YPEL3P61236 119 aaPredicted RBP11.91□□□□□ -0.5
VPS35-210ENST00000568784 C10orf55Q5SWW7 151 aa11.91□□□□□ -0.5
VPS35-210ENST00000568784 MDS2Q8NDY4 140 aa11.91□□□□□ -0.5
VPS35-210ENST00000568784 OR4B1Q8NGF8 309 aa11.91□□□□□ -0.5
VPS35-210ENST00000568784 SARAFQ96BY9 339 aa11.91□□□□□ -0.5
VPS35-210ENST00000568784 RNF114Q9Y508 228 aa11.91□□□□□ -0.5
VPS35-210ENST00000568784 ASPMQ8IZT6 3477 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms