RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 CDK10Q15131 360 aa0.66□□□□□ -2.3
USP3-209ENST00000558925 FAM27BQ5VT28 67 aa0.66□□□□□ -2.3
USP3-209ENST00000558925 SPOPLQ6IQ16 392 aa0.66□□□□□ -2.3
USP3-209ENST00000558925 Q6ZRN7 208 aaPredicted RBP0.66□□□□□ -2.3
USP3-209ENST00000558925 Q6ZTI0 123 aa0.66□□□□□ -2.3
USP3-209ENST00000558925 KTN1-AS1Q86SY8 53 aa0.66□□□□□ -2.3
USP3-209ENST00000558925 BPIFA4PQ86YQ2 179 aa0.66□□□□□ -2.3
USP3-209ENST00000558925 C20orf196Q8IYI0 205 aa0.66□□□□□ -2.3
USP3-209ENST00000558925 RPP25LQ8N5L8 163 aaKnown RBP0.66□□□□□ -2.3
USP3-209ENST00000558925 C9orf163Q8N9P6 203 aa0.66□□□□□ -2.3
USP3-209ENST00000558925 CDC26Q8NHZ8 85 aa0.66□□□□□ -2.3
USP3-209ENST00000558925 PHOSPHO2Q8TCD6 241 aa0.66□□□□□ -2.3
USP3-209ENST00000558925 TSPAN32Q96QS1 320 aa0.66□□□□□ -2.3
USP3-209ENST00000558925 OR52E6Q96RD3 313 aa0.66□□□□□ -2.3
USP3-209ENST00000558925 SIGMAR1Q99720 223 aa0.66□□□□□ -2.3
USP3-209ENST00000558925 NIPSNAP1Q9BPW8 284 aa0.66□□□□□ -2.3
USP3-209ENST00000558925 TMEM147Q9BVK8 224 aa0.66□□□□□ -2.3
USP3-209ENST00000558925 IDI2-AS1Q9NZ38 188 aa0.66□□□□□ -2.3
USP3-209ENST00000558925 GLTPQ9NZD2 209 aa0.66□□□□□ -2.3
USP3-209ENST00000558925 RSL24D1Q9UHA3 163 aaKnown RBP0.66□□□□□ -2.3
USP3-209ENST00000558925 FBXO5Q9UKT4 447 aa0.66□□□□□ -2.3
USP3-209ENST00000558925 CYSLTR1Q9Y271 337 aa0.66□□□□□ -2.3
USP3-209ENST00000558925 TIMM9Q9Y5J7 89 aa0.66□□□□□ -2.3
USP3-209ENST00000558925 PRRC2BQ5JSZ5 2229 aaKnown RBP0.66□□□□□ -2.3
USP3-209ENST00000558925 ZFHX2Q9C0A1 2572 aaPredicted RBP0.66□□□□□ -2.3
USP3-209ENST00000558925 ROBO3Q96MS0 1386 aa0.66□□□□□ -2.3
USP3-209ENST00000558925 HEATR5BQ9P2D3 2071 aa0.66□□□□□ -2.3
USP3-209ENST00000558925 COL11A1P12107 1806 aaPredicted RBP0.66□□□□□ -2.3
USP3-209ENST00000558925 EXOC1LA0A1B0GW35 172 aa0.65□□□□□ -2.31
USP3-209ENST00000558925 hADV38S2A0JD32 116 aa0.65□□□□□ -2.31
USP3-209ENST00000558925 PQLC2LA1A4F0 135 aa0.65□□□□□ -2.31
USP3-209ENST00000558925 ZNF860A6NHJ4 632 aa0.65□□□□□ -2.31
USP3-209ENST00000558925 HMSDA8MTL9 139 aa0.65□□□□□ -2.31
USP3-209ENST00000558925 FABP5P3A8MUU1 101 aa0.65□□□□□ -2.31
USP3-209ENST00000558925 BUB1B-PAK6H3BSN5 160 aa0.65□□□□□ -2.31
USP3-209ENST00000558925 NOS1APO75052 506 aaPredicted RBP0.65□□□□□ -2.31
USP3-209ENST00000558925 CRYZL1O95825 349 aa0.65□□□□□ -2.31
USP3-209ENST00000558925 SERPINA1P01009 418 aa0.65□□□□□ -2.31
USP3-209ENST00000558925 SHBGP04278 402 aa0.65□□□□□ -2.31
USP3-209ENST00000558925 TRGC1P0CF51 173 aa0.65□□□□□ -2.31
USP3-209ENST00000558925 SMIM17P0DL12 118 aa0.65□□□□□ -2.31
USP3-209ENST00000558925 RPS4Y1P22090 263 aaKnown RBP0.65□□□□□ -2.31
USP3-209ENST00000558925 HSD11B1P28845 292 aa0.65□□□□□ -2.31
USP3-209ENST00000558925 ZNF80P51504 273 aaPredicted RBP0.65□□□□□ -2.31
USP3-209ENST00000558925 KRTAP12-4P60329 112 aa0.65□□□□□ -2.31
USP3-209ENST00000558925 BASP1P80723 227 aaKnown RBP0.65□□□□□ -2.31
USP3-209ENST00000558925 GLO1Q04760 184 aa0.65□□□□□ -2.31
USP3-209ENST00000558925 EDDM3AQ14507 147 aa0.65□□□□□ -2.31
USP3-209ENST00000558925 TAF1AQ15573 450 aaPredicted RBP0.65□□□□□ -2.31
USP3-209ENST00000558925 C12orf74Q32Q52 190 aa0.65□□□□□ -2.31
USP3-209ENST00000558925 SLC36A1Q7Z2H8 476 aa0.65□□□□□ -2.31
USP3-209ENST00000558925 CLVS1Q8IUQ0 354 aaPredicted RBP0.65□□□□□ -2.31
USP3-209ENST00000558925 OR6V1Q8N148 313 aa0.65□□□□□ -2.31
USP3-209ENST00000558925 MRPL30Q8TCC3 161 aaKnown RBP0.65□□□□□ -2.31
USP3-209ENST00000558925 DCANP1Q8TF63 244 aa0.65□□□□□ -2.31
USP3-209ENST00000558925 H1FXQ92522 213 aaKnown RBP0.65□□□□□ -2.31
USP3-209ENST00000558925 CHMP6Q96FZ7 201 aa0.65□□□□□ -2.31
USP3-209ENST00000558925 HSPB9Q9BQS6 159 aa0.65□□□□□ -2.31
USP3-209ENST00000558925 CHST6Q9GZX3 395 aa0.65□□□□□ -2.31
USP3-209ENST00000558925 TLNRD1Q9H1K6 362 aa0.65□□□□□ -2.31
USP3-209ENST00000558925 XAGE1AQ9HD64 81 aa0.65□□□□□ -2.31
USP3-209ENST00000558925 PRTFDC1Q9NRG1 225 aa0.65□□□□□ -2.31
USP3-209ENST00000558925 TMEM106BQ9NUM4 274 aa0.65□□□□□ -2.31
USP3-209ENST00000558925 DOK5Q9P104 306 aa0.65□□□□□ -2.31
USP3-209ENST00000558925 KIF24Q5T7B8 1368 aa0.65□□□□□ -2.31
USP3-209ENST00000558925 DENND4BO75064 1496 aaPredicted RBP0.65□□□□□ -2.31
USP3-209ENST00000558925 DIDO1Q9BTC0 2240 aaKnown RBP0.65□□□□□ -2.31
USP3-209ENST00000558925 STRCP1A6NGW2 1772 aa0.65□□□□□ -2.31
USP3-209ENST00000558925 SCN8AQ9UQD0 1980 aa0.65□□□□□ -2.31
USP3-209ENST00000558925 INTS1Q8N201 2190 aaKnown RBP0.64□□□□□ -2.31
USP3-209ENST00000558925 CR1P17927 2039 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 TRAV9-1A0A075B6T8 112 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 hCG_1818297A0A087WSY0 165 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 DPRXA6NFQ7 191 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 OR51F1A6NGY5 319 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 A8MT66 165 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 IBA57-AS1B1ANH7 110 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 CLDN25C9JDP6 229 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 SLC22A1O15245 554 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 ORC5O43913 435 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 PDE6DO43924 150 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 OR2J2O76002 312 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 S1PR2O95136 353 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 ZNF682O95780 498 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 HAND1O96004 215 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 NAPSAO96009 420 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 C1QCP02747 245 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 IGKV1-16P04430 117 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 SMIM10L2AP0DMW4 78 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 SMIM10L2BP0DMW5 78 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 CRYGAP11844 174 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 HIST1H2BOP23527 126 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 PSMB8P28062 276 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 HIST1H2BBP33778 126 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 SERPINB9P50453 376 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 HIST1H2BDP58876 126 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 HIST1H2BCP62807 126 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 MRPS25P82663 173 aaKnown RBP0.64□□□□□ -2.31
USP3-209ENST00000558925 MOGQ16653 247 aa0.64□□□□□ -2.31
USP3-209ENST00000558925 HIST2H2BEQ16778 126 aa0.64□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms