RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, human

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF1-208	ENST00000532560	FAM223B	A6NKX1	122 aa		11.62	□□□□□ -0.55
CPSF1-208	ENST00000532560	B3GALNT1	O75752	331 aa		11.62	□□□□□ -0.55
CPSF1-208	ENST00000532560	IGKV1-39	P01597	117 aa		11.62	□□□□□ -0.55
CPSF1-208	ENST00000532560	IGHV3-11	P01762	117 aa		11.62	□□□□□ -0.55
CPSF1-208	ENST00000532560	IGKV1D-39	P04432	117 aa		11.62	□□□□□ -0.55
CPSF1-208	ENST00000532560	SERPINE2	P07093	398 aa		11.62	□□□□□ -0.55
CPSF1-208	ENST00000532560	MYOD1	P15172	320 aa		11.62	□□□□□ -0.55
CPSF1-208	ENST00000532560	UBE2M	P61081	183 aa	Known RBP	11.62	□□□□□ -0.55
CPSF1-208	ENST00000532560	C4orf46	Q504U0	113 aa		11.62	□□□□□ -0.55
CPSF1-208	ENST00000532560	FAM223A	Q8IWN6	122 aa		11.62	□□□□□ -0.55
CPSF1-208	ENST00000532560	C12orf45	Q8N5I9	185 aa	Predicted RBP	11.62	□□□□□ -0.55
CPSF1-208	ENST00000532560	SEC22A	Q96IW7	307 aa		11.62	□□□□□ -0.55
CPSF1-208	ENST00000532560	SRSF8	Q9BRL6	282 aa	Known RBP	11.62	□□□□□ -0.55
CPSF1-208	ENST00000532560	QTRT1	Q9BXR0	403 aa	Known RBP	11.62	□□□□□ -0.55
CPSF1-208	ENST00000532560	COMMD5	Q9GZQ3	224 aa		11.62	□□□□□ -0.55
CPSF1-208	ENST00000532560	MED9	Q9NWA0	146 aa		11.62	□□□□□ -0.55
CPSF1-208	ENST00000532560	C14orf166	Q9Y224	244 aa	Known RBP	11.62	□□□□□ -0.55
CPSF1-208	ENST00000532560	IGHV4OR15-8	A0A075B7B6	117 aa		11.61	□□□□□ -0.55
CPSF1-208	ENST00000532560		A0A087WW49	117 aa		11.61	□□□□□ -0.55
CPSF1-208	ENST00000532560	C3orf85	A0A1B0GTC6	90 aa		11.61	□□□□□ -0.55
CPSF1-208	ENST00000532560	LINC01619	G3V211	115 aa		11.61	□□□□□ -0.55
CPSF1-208	ENST00000532560	WIPF1	O43516	503 aa		11.61	□□□□□ -0.55
CPSF1-208	ENST00000532560	CRYGC	P07315	174 aa		11.61	□□□□□ -0.55
CPSF1-208	ENST00000532560	OR4E1	P0C645	316 aa		11.61	□□□□□ -0.55
CPSF1-208	ENST00000532560	AREG	P15514	252 aa		11.61	□□□□□ -0.55
CPSF1-208	ENST00000532560	PSMB6	P28072	239 aa		11.61	□□□□□ -0.55
CPSF1-208	ENST00000532560	AP2S1	P53680	142 aa	Predicted RBP	11.61	□□□□□ -0.55
CPSF1-208	ENST00000532560	RHOG	P84095	191 aa		11.61	□□□□□ -0.55
CPSF1-208	ENST00000532560	EXOSC2	Q13868	293 aa	Known RBP	11.61	□□□□□ -0.55
CPSF1-208	ENST00000532560	DPF1	Q92782	380 aa		11.61	□□□□□ -0.55
CPSF1-208	ENST00000532560	SCGB3A2	Q96PL1	93 aa		11.61	□□□□□ -0.55
CPSF1-208	ENST00000532560	TP53RK	Q96S44	253 aa		11.61	□□□□□ -0.55
CPSF1-208	ENST00000532560	C5orf66	Q9H5L9	145 aa		11.61	□□□□□ -0.55
CPSF1-208	ENST00000532560	PRND	Q9UKY0	176 aa		11.61	□□□□□ -0.55
CPSF1-208	ENST00000532560	IGLC7	A0M8Q6	106 aa		11.6	□□□□□ -0.55
CPSF1-208	ENST00000532560	RBMXL2	O75526	392 aa	Known RBP	11.6	□□□□□ -0.55
CPSF1-208	ENST00000532560	PRH1	P02810	166 aa		11.6	□□□□□ -0.55
CPSF1-208	ENST00000532560	HSPB1	P04792	205 aa	Known RBP	11.6	□□□□□ -0.55
CPSF1-208	ENST00000532560	CTRB1	P17538	263 aa		11.6	□□□□□ -0.55
CPSF1-208	ENST00000532560	S100A11	P31949	105 aa		11.6	□□□□□ -0.55
CPSF1-208	ENST00000532560	DEFA5	Q01523	94 aa		11.6	□□□□□ -0.55
CPSF1-208	ENST00000532560	KLK9	Q2XQG4	91 aa		11.6	□□□□□ -0.55
CPSF1-208	ENST00000532560	CTRB2	Q6GPI1	263 aa		11.6	□□□□□ -0.55
CPSF1-208	ENST00000532560	ZNF343	Q6P1L6	599 aa		11.6	□□□□□ -0.55
CPSF1-208	ENST00000532560	NECAP1	Q8NC96	275 aa		11.6	□□□□□ -0.55
CPSF1-208	ENST00000532560	OR1L8	Q8NGR8	309 aa		11.6	□□□□□ -0.55
CPSF1-208	ENST00000532560	RTBDN	Q9BSG5	229 aa	Predicted RBP	11.6	□□□□□ -0.55
CPSF1-208	ENST00000532560	TMEM14B	Q9NUH8	114 aa		11.6	□□□□□ -0.55
CPSF1-208	ENST00000532560	KLK9	Q9UKQ9	250 aa		11.6	□□□□□ -0.55
CPSF1-208	ENST00000532560	GPR132	Q9UNW8	380 aa		11.6	□□□□□ -0.55
CPSF1-208	ENST00000532560	C15orf61	A6NNL5	157 aa		11.59	□□□□□ -0.55
CPSF1-208	ENST00000532560	UCP1	P25874	307 aa		11.59	□□□□□ -0.55
CPSF1-208	ENST00000532560	EGFEM1P	Q0D2K5	195 aa		11.59	□□□□□ -0.55
CPSF1-208	ENST00000532560	H2BFWT	Q7Z2G1	175 aa		11.59	□□□□□ -0.55
CPSF1-208	ENST00000532560	REC114	Q7Z4M0	266 aa		11.59	□□□□□ -0.55
CPSF1-208	ENST00000532560	HSD17B13	Q7Z5P4	300 aa	Predicted RBP	11.59	□□□□□ -0.55
CPSF1-208	ENST00000532560	CCDC28A	Q8IWP9	274 aa		11.59	□□□□□ -0.55
CPSF1-208	ENST00000532560	OR5B3	Q8NH48	314 aa		11.59	□□□□□ -0.55
CPSF1-208	ENST00000532560	NAA60	Q9H7X0	242 aa		11.59	□□□□□ -0.55
CPSF1-208	ENST00000532560	FKBP11	Q9NYL4	201 aa		11.59	□□□□□ -0.55
CPSF1-208	ENST00000532560	OR51B2	Q9Y5P1	312 aa		11.59	□□□□□ -0.55
CPSF1-208	ENST00000532560		A0A0D9SG52	128 aa		11.58	□□□□□ -0.56
CPSF1-208	ENST00000532560	TEX50	A0A1B0GTY4	177 aa		11.58	□□□□□ -0.56
CPSF1-208	ENST00000532560	RPS10-NUDT3	A0A1W2PQS6	291 aa		11.58	□□□□□ -0.56
CPSF1-208	ENST00000532560	GOSR2	O14653	212 aa		11.58	□□□□□ -0.56
CPSF1-208	ENST00000532560	ATG12	O94817	140 aa		11.58	□□□□□ -0.56
CPSF1-208	ENST00000532560	MPC2	O95563	127 aa		11.58	□□□□□ -0.56
CPSF1-208	ENST00000532560	REG1A	P05451	166 aa		11.58	□□□□□ -0.56
CPSF1-208	ENST00000532560		P0C879	139 aa		11.58	□□□□□ -0.56
CPSF1-208	ENST00000532560	ZP3	P21754	424 aa		11.58	□□□□□ -0.56
CPSF1-208	ENST00000532560	HOXD3	P31249	432 aa	Predicted RBP	11.58	□□□□□ -0.56
CPSF1-208	ENST00000532560	SLURP1	P55000	103 aa		11.58	□□□□□ -0.56
CPSF1-208	ENST00000532560	ATP5G2	Q06055	141 aa		11.58	□□□□□ -0.56
CPSF1-208	ENST00000532560	C9orf66	Q5T8R8	295 aa		11.58	□□□□□ -0.56
CPSF1-208	ENST00000532560	C19orf35	Q6ZS72	473 aa		11.58	□□□□□ -0.56
CPSF1-208	ENST00000532560	DCUN1D4	Q92564	292 aa		11.58	□□□□□ -0.56
CPSF1-208	ENST00000532560	TMEM222	Q9H0R3	208 aa		11.58	□□□□□ -0.56
CPSF1-208	ENST00000532560	NDUFA4L2	Q9NRX3	87 aa		11.58	□□□□□ -0.56
CPSF1-208	ENST00000532560	NSG2	Q9Y328	171 aa		11.58	□□□□□ -0.56
CPSF1-208	ENST00000532560	IGLV11-55	A0A075B6I3	123 aa		11.57	□□□□□ -0.56
CPSF1-208	ENST00000532560	TEX13D	A0A0J9YY54	714 aa	Predicted RBP	11.57	□□□□□ -0.56
CPSF1-208	ENST00000532560	CRYM-AS1	A6NIL9	109 aa		11.57	□□□□□ -0.56
CPSF1-208	ENST00000532560	SEC14L6	B5MCN3	397 aa		11.57	□□□□□ -0.56
CPSF1-208	ENST00000532560	OVOL1	O14753	267 aa		11.57	□□□□□ -0.56
CPSF1-208	ENST00000532560	OR2J3	O76001	311 aa		11.57	□□□□□ -0.56
CPSF1-208	ENST00000532560	IGKV1-5	P01602	117 aa		11.57	□□□□□ -0.56
CPSF1-208	ENST00000532560	OR5AC1	P0C628	307 aa		11.57	□□□□□ -0.56
CPSF1-208	ENST00000532560	SLC25A4	P12235	298 aa		11.57	□□□□□ -0.56
CPSF1-208	ENST00000532560	HIST1H1B	P16401	226 aa	Known RBP	11.57	□□□□□ -0.56
CPSF1-208	ENST00000532560	CXCL2	P19875	107 aa		11.57	□□□□□ -0.56
CPSF1-208	ENST00000532560	AKR1C2	P52895	323 aa		11.57	□□□□□ -0.56
CPSF1-208	ENST00000532560	H2BFS	P57053	126 aa		11.57	□□□□□ -0.56
CPSF1-208	ENST00000532560	ZNF345	Q14585	488 aa		11.57	□□□□□ -0.56
CPSF1-208	ENST00000532560	C15orf32	Q32M92	178 aa		11.57	□□□□□ -0.56
CPSF1-208	ENST00000532560	SP6	Q3SY56	376 aa		11.57	□□□□□ -0.56
CPSF1-208	ENST00000532560	PDLIM3	Q53GG5	364 aa	Predicted RBP	11.57	□□□□□ -0.56
CPSF1-208	ENST00000532560	FAM209B	Q5JX69	171 aa		11.57	□□□□□ -0.56
CPSF1-208	ENST00000532560	TMUB2	Q71RG4	321 aa		11.57	□□□□□ -0.56
CPSF1-208	ENST00000532560	LYG2	Q86SG7	212 aa		11.57	□□□□□ -0.56
CPSF1-208	ENST00000532560	OR10W1	Q8NGF6	305 aa		11.57	□□□□□ -0.56

Retrieved 100 of 20,778 RNA–protein pairs in 83.7 ms