RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 NANOS2P60321 138 aaKnown RBP17.3■□□□□ 0.36
CPSF1-202ENST00000527827 RARRES2Q99969 163 aa17.3■□□□□ 0.36
CPSF1-202ENST00000527827 RHPN1-AS1Q9BWJ2 59 aa17.3■□□□□ 0.36
CPSF1-202ENST00000527827 OR51B2Q9Y5P1 312 aa17.3■□□□□ 0.36
CPSF1-202ENST00000527827 VPS13DQ5THJ4 4388 aa17.3■□□□□ 0.36
CPSF1-202ENST00000527827 HECTD4Q9Y4D8 3996 aa17.29■□□□□ 0.36
CPSF1-202ENST00000527827 IGHV7-4-1A0A0J9YVY3 117 aa17.29■□□□□ 0.36
CPSF1-202ENST00000527827 MEIS3P1A6NDR6 274 aa17.29■□□□□ 0.36
CPSF1-202ENST00000527827 MPTX1A8MV57 137 aa17.29■□□□□ 0.36
CPSF1-202ENST00000527827 PGLYRP1O75594 196 aaPredicted RBP17.29■□□□□ 0.36
CPSF1-202ENST00000527827 RLN1P04808 185 aa17.29■□□□□ 0.36
CPSF1-202ENST00000527827 LPAR6P43657 344 aa17.29■□□□□ 0.36
CPSF1-202ENST00000527827 HERV-K104P61576 105 aa17.29■□□□□ 0.36
CPSF1-202ENST00000527827 IDNKQ5T6J7 187 aa17.29■□□□□ 0.36
CPSF1-202ENST00000527827 CADM3Q8N126 398 aa17.29■□□□□ 0.36
CPSF1-202ENST00000527827 FCAMRQ8WWV6 532 aa17.29■□□□□ 0.36
CPSF1-202ENST00000527827 IGHV3-49A0A0A0MS15 119 aa17.28■□□□□ 0.36
CPSF1-202ENST00000527827 KRASP01116 189 aa17.28■□□□□ 0.36
CPSF1-202ENST00000527827 G6PCP35575 357 aa17.28■□□□□ 0.36
CPSF1-202ENST00000527827 CBX5P45973 191 aa17.28■□□□□ 0.36
CPSF1-202ENST00000527827 TFPI2P48307 235 aa17.28■□□□□ 0.36
CPSF1-202ENST00000527827 TMEM116Q8NCL8 245 aa17.28■□□□□ 0.36
CPSF1-202ENST00000527827 BORCS5Q969J3 196 aa17.28■□□□□ 0.36
CPSF1-202ENST00000527827 C11orf68Q9H3H3 251 aaKnown RBP17.28■□□□□ 0.36
CPSF1-202ENST00000527827 DBX1A6NMT0 343 aa17.27■□□□□ 0.36
CPSF1-202ENST00000527827 CMC4P56277 68 aaPredicted RBP17.27■□□□□ 0.36
CPSF1-202ENST00000527827 PRR20EP86478 221 aa17.27■□□□□ 0.36
CPSF1-202ENST00000527827 PRR20CP86479 221 aa17.27■□□□□ 0.36
CPSF1-202ENST00000527827 PRR20DP86480 221 aa17.27■□□□□ 0.36
CPSF1-202ENST00000527827 PRR20BP86481 221 aa17.27■□□□□ 0.36
CPSF1-202ENST00000527827 PRR20AP86496 221 aa17.27■□□□□ 0.36
CPSF1-202ENST00000527827 FAM90A2PQ658T7 463 aa17.27■□□□□ 0.36
CPSF1-202ENST00000527827 DHRS11Q6UWP2 260 aa17.27■□□□□ 0.36
CPSF1-202ENST00000527827 C11orf45Q8TAV5 145 aa17.27■□□□□ 0.36
CPSF1-202ENST00000527827 FCGR1BQ92637 280 aa17.27■□□□□ 0.36
CPSF1-202ENST00000527827 OR10C1Q96KK4 312 aa17.27■□□□□ 0.36
CPSF1-202ENST00000527827 DIABLOQ9NR28 239 aa17.27■□□□□ 0.36
CPSF1-202ENST00000527827 EHFQ9NZC4 300 aa17.27■□□□□ 0.36
CPSF1-202ENST00000527827 RAB26Q9ULW5 256 aa17.27■□□□□ 0.36
CPSF1-202ENST00000527827 IGKV3-7A0A075B6H7 116 aa17.26■□□□□ 0.35
CPSF1-202ENST00000527827 SNAPC5O75971 98 aa17.26■□□□□ 0.35
CPSF1-202ENST00000527827 RELQ04864 619 aaPredicted RBP17.26■□□□□ 0.35
CPSF1-202ENST00000527827 RBMS2Q15434 407 aaKnown RBP17.26■□□□□ 0.35
CPSF1-202ENST00000527827 OR1P1Q8NH06 330 aa17.26■□□□□ 0.35
CPSF1-202ENST00000527827 OR11H2Q8NH07 326 aa17.26■□□□□ 0.35
CPSF1-202ENST00000527827 MOB3AQ96BX8 217 aa17.26■□□□□ 0.35
CPSF1-202ENST00000527827 DGCR14Q96DF8 476 aaKnown RBP17.26■□□□□ 0.35
CPSF1-202ENST00000527827 MFFQ9GZY8 342 aa17.26■□□□□ 0.35
CPSF1-202ENST00000527827 FBXL17Q9UF56 701 aa17.26■□□□□ 0.35
CPSF1-202ENST00000527827 DNAH6Q9C0G6 4158 aa17.26■□□□□ 0.35
CPSF1-202ENST00000527827 RFX2P48378 723 aa17.25■□□□□ 0.35
CPSF1-202ENST00000527827 TMEM56Q96MV1 263 aa17.25■□□□□ 0.35
CPSF1-202ENST00000527827 ZNF2Q9BSG1 426 aaPredicted RBP17.25■□□□□ 0.35
CPSF1-202ENST00000527827 TMEM14BQ9NUH8 114 aa17.25■□□□□ 0.35
CPSF1-202ENST00000527827 PRNDQ9UKY0 176 aa17.25■□□□□ 0.35
CPSF1-202ENST00000527827 I3L2K1 104 aa17.24■□□□□ 0.35
CPSF1-202ENST00000527827 NUPL2O15504 423 aaKnown RBP17.24■□□□□ 0.35
CPSF1-202ENST00000527827 YIF1AO95070 293 aa17.24■□□□□ 0.35
CPSF1-202ENST00000527827 GBGT1Q8N5D6 347 aa17.24■□□□□ 0.35
CPSF1-202ENST00000527827 SLC25A46Q96AG3 418 aa17.24■□□□□ 0.35
CPSF1-202ENST00000527827 IFT46Q9NQC8 304 aa17.24■□□□□ 0.35
CPSF1-202ENST00000527827 FKBP11Q9NYL4 201 aa17.24■□□□□ 0.35
CPSF1-202ENST00000527827 ANAPC10Q9UM13 185 aa17.24■□□□□ 0.35
CPSF1-202ENST00000527827 IGHV3OR16-13A0A075B7E8 117 aa17.23■□□□□ 0.35
CPSF1-202ENST00000527827 IGHV3-74A0A0B4J1X5 117 aa17.23■□□□□ 0.35
CPSF1-202ENST00000527827 IFNA4P05014 189 aa17.23■□□□□ 0.35
CPSF1-202ENST00000527827 NXF2Q9GZY0 626 aaKnown RBP17.23■□□□□ 0.35
CPSF1-202ENST00000527827 FXYD6Q9H0Q3 95 aa17.23■□□□□ 0.35
CPSF1-202ENST00000527827 TRAV14DV4A0A0A6YYC5 116 aa17.22■□□□□ 0.35
CPSF1-202ENST00000527827 LOC100506127A0A0U1RQW1 187 aa17.22■□□□□ 0.35
CPSF1-202ENST00000527827 C15orf61A6NNL5 157 aa17.22■□□□□ 0.35
CPSF1-202ENST00000527827 DEFB4AO15263 64 aa17.22■□□□□ 0.35
CPSF1-202ENST00000527827 XRCC3O43542 346 aa17.22■□□□□ 0.35
CPSF1-202ENST00000527827 PMP2P02689 132 aa17.22■□□□□ 0.35
CPSF1-202ENST00000527827 MFAP4P55083 255 aa17.22■□□□□ 0.35
CPSF1-202ENST00000527827 TSPAN14Q8NG11 270 aa17.22■□□□□ 0.35
CPSF1-202ENST00000527827 C2CD4CQ8TF44 421 aa17.22■□□□□ 0.35
CPSF1-202ENST00000527827 MISP3Q96FF7 219 aa17.22■□□□□ 0.35
CPSF1-202ENST00000527827 TXN2Q99757 166 aa17.22■□□□□ 0.35
CPSF1-202ENST00000527827 CA1P00915 261 aaPredicted RBP17.21■□□□□ 0.35
CPSF1-202ENST00000527827 IGHV3-48P01763 117 aa17.21■□□□□ 0.35
CPSF1-202ENST00000527827 CMTM1Q8IZ96 169 aa17.21■□□□□ 0.35
CPSF1-202ENST00000527827 CMTM3Q96MX0 182 aa17.21■□□□□ 0.35
CPSF1-202ENST00000527827 GPR31O00270 319 aa17.2■□□□□ 0.34
CPSF1-202ENST00000527827 MT-CO2P00403 227 aa17.2■□□□□ 0.34
CPSF1-202ENST00000527827 NAT1P18440 290 aa17.2■□□□□ 0.34
CPSF1-202ENST00000527827 TCF24Q7RTU0 167 aa17.2■□□□□ 0.34
CPSF1-202ENST00000527827 LILRB2Q8N423 598 aa17.2■□□□□ 0.34
CPSF1-202ENST00000527827 TSC22D3Q99576 134 aa17.2■□□□□ 0.34
CPSF1-202ENST00000527827 KIAA1109Q2LD37 5005 aa17.19■□□□□ 0.34
CPSF1-202ENST00000527827 TCTAP57738 103 aa17.19■□□□□ 0.34
CPSF1-202ENST00000527827 ZNF114Q8NC26 417 aa17.19■□□□□ 0.34
CPSF1-202ENST00000527827 OR5H2Q8NGV7 314 aa17.19■□□□□ 0.34
CPSF1-202ENST00000527827 ST8SIA2Q92186 375 aa17.19■□□□□ 0.34
CPSF1-202ENST00000527827 VSIRQ9H7M9 311 aa17.19■□□□□ 0.34
CPSF1-202ENST00000527827 APLNQ9ULZ1 77 aa17.19■□□□□ 0.34
CPSF1-202ENST00000527827 APOHP02749 345 aaPredicted RBP17.18■□□□□ 0.34
CPSF1-202ENST00000527827 PAFAH1B2P68402 229 aa17.18■□□□□ 0.34
CPSF1-202ENST00000527827 TMEM187Q14656 261 aa17.18■□□□□ 0.34
CPSF1-202ENST00000527827 TOMM20LQ6UXN7 152 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms