RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 SLC35A5Q9BS91 424 aa3.02□□□□□ -1.93
HMGB1-207ENST00000468384 ACTR3CQ9C0K3 210 aaPredicted RBP3.02□□□□□ -1.93
HMGB1-207ENST00000468384 CHST6Q9GZX3 395 aa3.02□□□□□ -1.93
HMGB1-207ENST00000468384 PBOV1Q9GZY1 135 aa3.02□□□□□ -1.93
HMGB1-207ENST00000468384 PPDPFQ9H3Y8 114 aa3.02□□□□□ -1.93
HMGB1-207ENST00000468384 NIPAL2Q9H841 368 aa3.02□□□□□ -1.93
HMGB1-207ENST00000468384 NHEJ1Q9H9Q4 299 aaPredicted RBP3.02□□□□□ -1.93
HMGB1-207ENST00000468384 FGF20Q9NP95 211 aaPredicted RBP3.02□□□□□ -1.93
HMGB1-207ENST00000468384 INIPQ9NRY2 104 aa3.02□□□□□ -1.93
HMGB1-207ENST00000468384 KIF25Q9UIL4 384 aa3.02□□□□□ -1.93
HMGB1-207ENST00000468384 RFNGQ9Y644 331 aa3.02□□□□□ -1.93
HMGB1-207ENST00000468384 IGLV7-46A0A075B6I9 117 aa3.01□□□□□ -1.93
HMGB1-207ENST00000468384 IFITM10A6NMD0 228 aa3.01□□□□□ -1.93
HMGB1-207ENST00000468384 SOCS3O14543 225 aa3.01□□□□□ -1.93
HMGB1-207ENST00000468384 NDUFAB1O14561 156 aa3.01□□□□□ -1.93
HMGB1-207ENST00000468384 GOSR2O14653 212 aa3.01□□□□□ -1.93
HMGB1-207ENST00000468384 PPP1R2P9O14990 202 aa3.01□□□□□ -1.93
HMGB1-207ENST00000468384 PRKYO43930 277 aa3.01□□□□□ -1.93
HMGB1-207ENST00000468384 CTSDP07339 412 aaPredicted RBP3.01□□□□□ -1.93
HMGB1-207ENST00000468384 ASAH2BP0C7U1 165 aa3.01□□□□□ -1.93
HMGB1-207ENST00000468384 GATA1P15976 413 aaPredicted RBP3.01□□□□□ -1.93
HMGB1-207ENST00000468384 SERPINA2P20848 420 aa3.01□□□□□ -1.93
HMGB1-207ENST00000468384 ERP29P30040 261 aaKnown RBP3.01□□□□□ -1.93
HMGB1-207ENST00000468384 SERPINB5P36952 375 aa3.01□□□□□ -1.93
HMGB1-207ENST00000468384 VHLP40337 213 aa3.01□□□□□ -1.93
HMGB1-207ENST00000468384 LEPP41159 167 aa3.01□□□□□ -1.93
HMGB1-207ENST00000468384 AQP2P41181 271 aa3.01□□□□□ -1.93
HMGB1-207ENST00000468384 GPM6AP51674 278 aa3.01□□□□□ -1.93
HMGB1-207ENST00000468384 PRKXP51817 358 aa3.01□□□□□ -1.93
HMGB1-207ENST00000468384 FAM3AP98173 230 aa3.01□□□□□ -1.93
HMGB1-207ENST00000468384 PRDX4Q13162 271 aa3.01□□□□□ -1.93
HMGB1-207ENST00000468384 TRIM16LQ309B1 348 aa3.01□□□□□ -1.93
HMGB1-207ENST00000468384 ASB16-AS1Q495Z4 193 aa3.01□□□□□ -1.93
HMGB1-207ENST00000468384 C5orf47Q569G3 176 aa3.01□□□□□ -1.93
HMGB1-207ENST00000468384 SAPCD1Q5SSQ6 148 aa3.01□□□□□ -1.93
HMGB1-207ENST00000468384 MEDAGQ5VYS4 303 aa3.01□□□□□ -1.93
HMGB1-207ENST00000468384 LRRTM1Q86UE6 522 aa3.01□□□□□ -1.93
HMGB1-207ENST00000468384 BEST4Q8NFU0 473 aa3.01□□□□□ -1.93
HMGB1-207ENST00000468384 NPBQ8NG41 125 aa3.01□□□□□ -1.93
HMGB1-207ENST00000468384 OR1S2Q8NGQ3 325 aa3.01□□□□□ -1.93
HMGB1-207ENST00000468384 LYPD6BQ8NI32 183 aa3.01□□□□□ -1.93
HMGB1-207ENST00000468384 BAALCQ8WXS3 180 aa3.01□□□□□ -1.93
HMGB1-207ENST00000468384 AMELYQ99218 206 aa3.01□□□□□ -1.93
HMGB1-207ENST00000468384 AMBNQ9NP70 447 aa3.01□□□□□ -1.93
HMGB1-207ENST00000468384 MED4Q9NPJ6 270 aa3.01□□□□□ -1.93
HMGB1-207ENST00000468384 ABCD2Q9UBJ2 740 aa3.01□□□□□ -1.93
HMGB1-207ENST00000468384 ZNF230Q9UIE0 474 aaPredicted RBP3.01□□□□□ -1.93
HMGB1-207ENST00000468384 NAGKQ9UJ70 344 aa3.01□□□□□ -1.93
HMGB1-207ENST00000468384 POLR1DQ9Y2S0 133 aa3.01□□□□□ -1.93
HMGB1-207ENST00000468384 KCNIP3Q9Y2W7 256 aa3.01□□□□□ -1.93
HMGB1-207ENST00000468384 YTHDF2Q9Y5A9 579 aaKnown RBP3.01□□□□□ -1.93
HMGB1-207ENST00000468384 MPC1Q9Y5U8 109 aa3.01□□□□□ -1.93
HMGB1-207ENST00000468384 LHFPL6Q9Y693 200 aa3.01□□□□□ -1.93
HMGB1-207ENST00000468384 HMCN1Q96RW7 5635 aa3.01□□□□□ -1.93
HMGB1-207ENST00000468384 RBFOX3A6NFN3 312 aa3□□□□□ -1.93
HMGB1-207ENST00000468384 SMIM9A6NGZ8 99 aa3□□□□□ -1.93
HMGB1-207ENST00000468384 TRDCB7Z8K6 153 aa3□□□□□ -1.93
HMGB1-207ENST00000468384 M0R135 149 aa3□□□□□ -1.93
HMGB1-207ENST00000468384 HMGN4O00479 90 aa3□□□□□ -1.93
HMGB1-207ENST00000468384 BANF1O75531 89 aa3□□□□□ -1.93
HMGB1-207ENST00000468384 RBBP9O75884 186 aa3□□□□□ -1.93
HMGB1-207ENST00000468384 OR7A10O76100 309 aa3□□□□□ -1.93
HMGB1-207ENST00000468384 NDUFA3O95167 84 aa3□□□□□ -1.93
HMGB1-207ENST00000468384 BCL3P20749 454 aa3□□□□□ -1.93
HMGB1-207ENST00000468384 FGF9P31371 208 aaPredicted RBP3□□□□□ -1.93
HMGB1-207ENST00000468384 GLP1RP43220 463 aa3□□□□□ -1.93
HMGB1-207ENST00000468384 B2MP61769 119 aa3□□□□□ -1.93
HMGB1-207ENST00000468384 FADDQ13158 208 aa3□□□□□ -1.93
HMGB1-207ENST00000468384 CNPY1Q3B7I2 92 aa3□□□□□ -1.93
HMGB1-207ENST00000468384 PAN3Q58A45 887 aaKnown RBP3□□□□□ -1.93
HMGB1-207ENST00000468384 PLEKHG7Q6ZR37 379 aa3□□□□□ -1.93
HMGB1-207ENST00000468384 SLC25A48Q6ZT89 311 aaKnown RBP3□□□□□ -1.93
HMGB1-207ENST00000468384 SPAG16Q8N0X2 631 aa3□□□□□ -1.93
HMGB1-207ENST00000468384 ZNF664Q8N3J9 261 aa3□□□□□ -1.93
HMGB1-207ENST00000468384 FANK1Q8TC84 345 aa3□□□□□ -1.93
HMGB1-207ENST00000468384 GNPNAT1Q96EK6 184 aaPredicted RBP3□□□□□ -1.93
HMGB1-207ENST00000468384 CHCHD5Q9BSY4 110 aa3□□□□□ -1.93
HMGB1-207ENST00000468384 SRRQ9GZT4 340 aa3□□□□□ -1.93
HMGB1-207ENST00000468384 SAV1Q9H4B6 383 aaPredicted RBP3□□□□□ -1.93
HMGB1-207ENST00000468384 AIG1Q9NVV5 245 aa3□□□□□ -1.93
HMGB1-207ENST00000468384 RIMS3Q9UJD0 308 aa3□□□□□ -1.93
HMGB1-207ENST00000468384 LOC100131303A0A0U1RQF7 123 aa2.99□□□□□ -1.93
HMGB1-207ENST00000468384 CENPXA8MT69 81 aa2.99□□□□□ -1.93
HMGB1-207ENST00000468384 ZNF705FA8MVS1 300 aaPredicted RBP2.99□□□□□ -1.93
HMGB1-207ENST00000468384 M0QXV9 152 aa2.99□□□□□ -1.93
HMGB1-207ENST00000468384 NOS1APO75052 506 aaPredicted RBP2.99□□□□□ -1.93
HMGB1-207ENST00000468384 FADS2O95864 444 aaKnown RBP2.99□□□□□ -1.93
HMGB1-207ENST00000468384 OCMP0CE72 109 aaPredicted RBP2.99□□□□□ -1.93
HMGB1-207ENST00000468384 ZNF705DP0CH99 300 aaPredicted RBP2.99□□□□□ -1.93
HMGB1-207ENST00000468384 ZNF705BP0CI00 300 aaPredicted RBP2.99□□□□□ -1.93
HMGB1-207ENST00000468384 CT45A10P0DMU9 189 aa2.99□□□□□ -1.93
HMGB1-207ENST00000468384 GABRR1P24046 479 aa2.99□□□□□ -1.93
HMGB1-207ENST00000468384 DSTNP60981 165 aa2.99□□□□□ -1.93
HMGB1-207ENST00000468384 UBE2KP61086 200 aa2.99□□□□□ -1.93
HMGB1-207ENST00000468384 KIAA0040Q15053 153 aa2.99□□□□□ -1.93
HMGB1-207ENST00000468384 IMPG1Q17R60 797 aa2.99□□□□□ -1.93
HMGB1-207ENST00000468384 TDRG1Q3Y452 100 aa2.99□□□□□ -1.93
HMGB1-207ENST00000468384 ZNF506Q5JVG8 444 aa2.99□□□□□ -1.93
HMGB1-207ENST00000468384 METTL21CQ5VZV1 264 aa2.99□□□□□ -1.93
HMGB1-207ENST00000468384 UFSP1Q6NVU6 142 aa2.99□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms