RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 PCP4P48539 62 aa18.39■□□□□ 0.53
TRIM28-202ENST00000341753 LOXL4Q96JB6 756 aa18.39■□□□□ 0.53
TRIM28-202ENST00000341753 BMPR1BO00238 502 aa18.38■□□□□ 0.53
TRIM28-202ENST00000341753 ADH4P08319 380 aa18.38■□□□□ 0.53
TRIM28-202ENST00000341753 SMIM21Q3B7S5 101 aa18.38■□□□□ 0.53
TRIM28-202ENST00000341753 OR7C2O60412 319 aa18.38■□□□□ 0.53
TRIM28-202ENST00000341753 WT1P19544 449 aaPredicted RBP18.38■□□□□ 0.53
TRIM28-202ENST00000341753 PRDX2P32119 198 aa18.38■□□□□ 0.53
TRIM28-202ENST00000341753 HNRNPA3P51991 378 aaKnown RBP18.37■□□□□ 0.53
TRIM28-202ENST00000341753 PRR7Q8TB68 274 aa18.37■□□□□ 0.53
TRIM28-202ENST00000341753 SSBP3Q9BWW4 388 aaPredicted RBP18.37■□□□□ 0.53
TRIM28-202ENST00000341753 SLC45A2Q9UMX9 530 aa18.37■□□□□ 0.53
TRIM28-202ENST00000341753 OR5G3P0C626 314 aa18.37■□□□□ 0.53
TRIM28-202ENST00000341753 IGLC2P0DOY2 106 aa18.37■□□□□ 0.53
TRIM28-202ENST00000341753 IGLC3P0DOY3 106 aa18.37■□□□□ 0.53
TRIM28-202ENST00000341753 NIT1Q86X76 327 aa18.37■□□□□ 0.53
TRIM28-202ENST00000341753 DEFB124Q8NES8 71 aa18.37■□□□□ 0.53
TRIM28-202ENST00000341753 OR52E5Q8NH55 327 aa18.37■□□□□ 0.53
TRIM28-202ENST00000341753 TRBV9A0A0B4J1U6 114 aa18.36■□□□□ 0.53
TRIM28-202ENST00000341753 ZNF324O75467 553 aaPredicted RBP18.36■□□□□ 0.53
TRIM28-202ENST00000341753 CRYABP02511 175 aaKnown RBP18.36■□□□□ 0.53
TRIM28-202ENST00000341753 LINC00869P0C866 280 aa18.36■□□□□ 0.53
TRIM28-202ENST00000341753 FDCSPQ8NFU4 85 aa18.36■□□□□ 0.53
TRIM28-202ENST00000341753 IFI27L2Q9H2X8 130 aa18.36■□□□□ 0.53
TRIM28-202ENST00000341753 CDC42EP3Q9UKI2 254 aa18.36■□□□□ 0.53
TRIM28-202ENST00000341753 GGTLC3B5MD39 225 aa18.36■□□□□ 0.53
TRIM28-202ENST00000341753 TIGITQ495A1 244 aa18.36■□□□□ 0.53
TRIM28-202ENST00000341753 ZNRF1Q8ND25 227 aa18.36■□□□□ 0.53
TRIM28-202ENST00000341753 ZNF503Q96F45 646 aa18.36■□□□□ 0.53
TRIM28-202ENST00000341753 NABP2Q9BQ15 211 aa18.36■□□□□ 0.53
TRIM28-202ENST00000341753 UQCR10Q9UDW1 63 aa18.36■□□□□ 0.53
TRIM28-202ENST00000341753 J3QW42 95 aa18.36■□□□□ 0.53
TRIM28-202ENST00000341753 RAB31Q13636 194 aa18.36■□□□□ 0.53
TRIM28-202ENST00000341753 CNEP1R1Q8N9A8 125 aa18.36■□□□□ 0.53
TRIM28-202ENST00000341753 FAM168AQ92567 244 aa18.36■□□□□ 0.53
TRIM28-202ENST00000341753 TRIB1Q96RU8 372 aa18.36■□□□□ 0.53
TRIM28-202ENST00000341753 LY96Q9Y6Y9 160 aa18.36■□□□□ 0.53
TRIM28-202ENST00000341753 DPRXA6NFQ7 191 aa18.35■□□□□ 0.53
TRIM28-202ENST00000341753 HINT1P49773 126 aaPredicted RBP18.35■□□□□ 0.53
TRIM28-202ENST00000341753 PRR20EP86478 221 aa18.35■□□□□ 0.53
TRIM28-202ENST00000341753 PRR20CP86479 221 aa18.35■□□□□ 0.53
TRIM28-202ENST00000341753 PRR20DP86480 221 aa18.35■□□□□ 0.53
TRIM28-202ENST00000341753 PRR20BP86481 221 aa18.35■□□□□ 0.53
TRIM28-202ENST00000341753 PRR20AP86496 221 aa18.35■□□□□ 0.53
TRIM28-202ENST00000341753 MLANAQ16655 118 aa18.35■□□□□ 0.53
TRIM28-202ENST00000341753 OR4A47Q6IF82 309 aa18.35■□□□□ 0.53
TRIM28-202ENST00000341753 ALKBH2Q6NS38 261 aa18.35■□□□□ 0.53
TRIM28-202ENST00000341753 FAM90A1Q86YD7 464 aa18.35■□□□□ 0.53
TRIM28-202ENST00000341753 LINC00479Q96M42 142 aa18.35■□□□□ 0.53
TRIM28-202ENST00000341753 IL19Q9UHD0 177 aa18.35■□□□□ 0.53
TRIM28-202ENST00000341753 LAMTOR2Q9Y2Q5 125 aa18.35■□□□□ 0.53
TRIM28-202ENST00000341753 C15orf61A6NNL5 157 aa18.35■□□□□ 0.53
TRIM28-202ENST00000341753 AREGP15514 252 aa18.35■□□□□ 0.53
TRIM28-202ENST00000341753 WDR73Q6P4I2 378 aa18.35■□□□□ 0.53
TRIM28-202ENST00000341753 TSKUQ8WUA8 353 aa18.35■□□□□ 0.53
TRIM28-202ENST00000341753 ENY2Q9NPA8 101 aa18.35■□□□□ 0.53
TRIM28-202ENST00000341753 MAP1BP46821 2468 aaKnown RBP18.35■□□□□ 0.53
TRIM28-202ENST00000341753 TNCP24821 2201 aa18.34■□□□□ 0.53
TRIM28-202ENST00000341753 FAM90A9PA6NNJ1 464 aa18.34■□□□□ 0.53
TRIM28-202ENST00000341753 OR10J3Q5JRS4 329 aa18.34■□□□□ 0.53
TRIM28-202ENST00000341753 IBA57Q5T440 356 aaKnown RBP18.34■□□□□ 0.53
TRIM28-202ENST00000341753 FAM214BQ7L5A3 538 aa18.34■□□□□ 0.53
TRIM28-202ENST00000341753 PLEKHA3Q9HB20 300 aa18.34■□□□□ 0.53
TRIM28-202ENST00000341753 IGKV1D-17A0A075B6S4 117 aa18.34■□□□□ 0.53
TRIM28-202ENST00000341753 ZNF891A8MT65 544 aaPredicted RBP18.34■□□□□ 0.53
TRIM28-202ENST00000341753 SLAQ13239 276 aa18.34■□□□□ 0.53
TRIM28-202ENST00000341753 IGKV1OR2-108A0A075B7D4 117 aa18.33■□□□□ 0.53
TRIM28-202ENST00000341753 AMY1AP04745 511 aa18.33■□□□□ 0.53
TRIM28-202ENST00000341753 MT-ND6P03923 174 aa18.33■□□□□ 0.52
TRIM28-202ENST00000341753 LOXL3P58215 753 aa18.33■□□□□ 0.52
TRIM28-202ENST00000341753 RP1L1Q8IWN7 2480 aaPredicted RBP18.32■□□□□ 0.52
TRIM28-202ENST00000341753 IGLV2-8P01709 118 aa18.32■□□□□ 0.52
TRIM28-202ENST00000341753 APCSP02743 223 aa18.32■□□□□ 0.52
TRIM28-202ENST00000341753 PRRX1P54821 245 aa18.32■□□□□ 0.52
TRIM28-202ENST00000341753 OR2Z1Q8NG97 314 aa18.32■□□□□ 0.52
TRIM28-202ENST00000341753 JPT1Q9UK76 154 aa18.32■□□□□ 0.52
TRIM28-202ENST00000341753 SMG1Q96Q15 3661 aaKnown RBP18.32■□□□□ 0.52
TRIM28-202ENST00000341753 USF1P22415 310 aaPredicted RBP18.32■□□□□ 0.52
TRIM28-202ENST00000341753 UNQ5815/PRO19632Q6UWF5 114 aa18.32■□□□□ 0.52
TRIM28-202ENST00000341753 TMEM178AQ8NBL3 297 aa18.32■□□□□ 0.52
TRIM28-202ENST00000341753 SLC35D1Q9NTN3 355 aa18.32■□□□□ 0.52
TRIM28-202ENST00000341753 TRGV8A0A0C4DH27 118 aa18.31■□□□□ 0.52
TRIM28-202ENST00000341753 HSPE1P61604 102 aaKnown RBP18.31■□□□□ 0.52
TRIM28-202ENST00000341753 SPRNQ5BIV9 151 aa18.31■□□□□ 0.52
TRIM28-202ENST00000341753 VWA1Q6PCB0 445 aa18.31■□□□□ 0.52
TRIM28-202ENST00000341753 OR4S2Q8NH73 311 aa18.31■□□□□ 0.52
TRIM28-202ENST00000341753 CLEC7AQ9BXN2 247 aa18.31■□□□□ 0.52
TRIM28-202ENST00000341753 OSTCQ9NRP0 149 aa18.31■□□□□ 0.52
TRIM28-202ENST00000341753 CACNA1GO43497 2377 aa18.31■□□□□ 0.52
TRIM28-202ENST00000341753 CCL25O15444 150 aa18.31■□□□□ 0.52
TRIM28-202ENST00000341753 BORCS7Q96B45 105 aa18.31■□□□□ 0.52
TRIM28-202ENST00000341753 SAA2-SAA4A0A096LPE2 208 aa18.3■□□□□ 0.52
TRIM28-202ENST00000341753 TRAV5A0A0B4J249 113 aa18.3■□□□□ 0.52
TRIM28-202ENST00000341753 ZNF439Q8NDP4 499 aa18.3■□□□□ 0.52
TRIM28-202ENST00000341753 IDI2-AS1Q9NZ38 188 aa18.3■□□□□ 0.52
TRIM28-202ENST00000341753 SAA2P0DJI9 122 aaPredicted RBP18.3■□□□□ 0.52
TRIM28-202ENST00000341753 FAM201AQ5SY85 155 aa18.3■□□□□ 0.52
TRIM28-202ENST00000341753 MORN5Q5VZ52 161 aa18.3■□□□□ 0.52
TRIM28-202ENST00000341753 DDB2Q92466 427 aa18.3■□□□□ 0.52
TRIM28-202ENST00000341753 TMEM167BQ9NRX6 74 aa18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms