RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 PARLQ9H300 379 aa8.56□□□□□ -1.04
CHD3-201ENST00000330494 A0A1B0GTI1 187 aa8.56□□□□□ -1.04
CHD3-201ENST00000330494 C17orf100A8MU93 164 aa8.56□□□□□ -1.04
CHD3-201ENST00000330494 NUP37Q8NFH4 326 aa8.56□□□□□ -1.04
CHD3-201ENST00000330494 SELENOTP62341 195 aa8.56□□□□□ -1.04
CHD3-201ENST00000330494 ICAM4Q14773 271 aa8.56□□□□□ -1.04
CHD3-201ENST00000330494 DNM1P46Q6ZS02 220 aa8.56□□□□□ -1.04
CHD3-201ENST00000330494 NR2C2APQ86WQ0 139 aa8.56□□□□□ -1.04
CHD3-201ENST00000330494 NIT1Q86X76 327 aa8.56□□□□□ -1.04
CHD3-201ENST00000330494 RTBDNQ9BSG5 229 aaPredicted RBP8.56□□□□□ -1.04
CHD3-201ENST00000330494 PLXNA4Q9HCM2 1894 aa8.56□□□□□ -1.04
CHD3-201ENST00000330494 DERL1Q9BUN8 251 aa8.56□□□□□ -1.04
CHD3-201ENST00000330494 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP8.55□□□□□ -1.04
CHD3-201ENST00000330494 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.55□□□□□ -1.04
CHD3-201ENST00000330494 C9JCJ5 164 aa8.55□□□□□ -1.04
CHD3-201ENST00000330494 RAMP3O60896 148 aa8.55□□□□□ -1.04
CHD3-201ENST00000330494 ZNF324O75467 553 aaPredicted RBP8.55□□□□□ -1.04
CHD3-201ENST00000330494 Q0VFX4 171 aa8.55□□□□□ -1.04
CHD3-201ENST00000330494 CYP2G1PQ6ZSU1 146 aa8.55□□□□□ -1.04
CHD3-201ENST00000330494 C10orf126Q8N4M7 172 aa8.55□□□□□ -1.04
CHD3-201ENST00000330494 WBP1Q96G27 269 aa8.55□□□□□ -1.04
CHD3-201ENST00000330494 IQCF6A8MYZ5 107 aa8.55□□□□□ -1.04
CHD3-201ENST00000330494 C2orf83Q53S99 150 aa8.55□□□□□ -1.04
CHD3-201ENST00000330494 LAMTOR1Q6IAA8 161 aa8.55□□□□□ -1.04
CHD3-201ENST00000330494 ZNF418Q8TF45 676 aaPredicted RBP8.55□□□□□ -1.04
CHD3-201ENST00000330494 SMIM8Q96KF7 97 aa8.55□□□□□ -1.04
CHD3-201ENST00000330494 TM2D1Q9BX74 207 aa8.55□□□□□ -1.04
CHD3-201ENST00000330494 NTN3O00634 580 aaPredicted RBP8.55□□□□□ -1.04
CHD3-201ENST00000330494 CGAP01215 116 aa8.55□□□□□ -1.04
CHD3-201ENST00000330494 YAE1D1Q9NRH1 226 aa8.55□□□□□ -1.04
CHD3-201ENST00000330494 PEF1Q9UBV8 284 aaKnown RBP8.55□□□□□ -1.04
CHD3-201ENST00000330494 KBTBD11-OT1A0A1B0GTJ5 212 aa8.55□□□□□ -1.04
CHD3-201ENST00000330494 LYPD3O95274 346 aa8.55□□□□□ -1.04
CHD3-201ENST00000330494 GLMPQ8WWB7 406 aa8.55□□□□□ -1.04
CHD3-201ENST00000330494 GTF3AQ92664 365 aaKnown RBP8.55□□□□□ -1.04
CHD3-201ENST00000330494 KIF26AQ9ULI4 1882 aaPredicted RBP8.55□□□□□ -1.04
CHD3-201ENST00000330494 EFNA2O43921 213 aa8.55□□□□□ -1.04
CHD3-201ENST00000330494 TBR1Q16650 682 aa8.55□□□□□ -1.04
CHD3-201ENST00000330494 SEMA5BQ9P283 1151 aa8.55□□□□□ -1.04
CHD3-201ENST00000330494 FBXL7Q9UJT9 491 aa8.55□□□□□ -1.04
CHD3-201ENST00000330494 LOC102723996A0A087X1L8 192 aa8.54□□□□□ -1.04
CHD3-201ENST00000330494 IL6RP08887 468 aaPredicted RBP8.54□□□□□ -1.04
CHD3-201ENST00000330494 AMMECR1LQ6DCA0 310 aa8.54□□□□□ -1.04
CHD3-201ENST00000330494 SYT8Q8NBV8 401 aa8.54□□□□□ -1.04
CHD3-201ENST00000330494 CD55P08174 381 aa8.54□□□□□ -1.04
CHD3-201ENST00000330494 C14orf144Q96I85 54 aa8.54□□□□□ -1.04
CHD3-201ENST00000330494 NHLRC3Q5JS37 347 aa8.54□□□□□ -1.04
CHD3-201ENST00000330494 KIR3DL3Q8N743 410 aa8.54□□□□□ -1.04
CHD3-201ENST00000330494 ITLN2Q8WWU7 325 aaPredicted RBP8.54□□□□□ -1.04
CHD3-201ENST00000330494 DPM3Q9P2X0 92 aa8.54□□□□□ -1.04
CHD3-201ENST00000330494 IGKV1D-13A0A0B4J2D9 117 aa8.54□□□□□ -1.04
CHD3-201ENST00000330494 IGKV1-13P0DP09 117 aa8.54□□□□□ -1.04
CHD3-201ENST00000330494 ZNF56Q15929 161 aa8.54□□□□□ -1.04
CHD3-201ENST00000330494 PAQR4Q8N4S7 273 aaPredicted RBP8.54□□□□□ -1.04
CHD3-201ENST00000330494 C1orf162Q8NEQ5 155 aaPredicted RBP8.54□□□□□ -1.04
CHD3-201ENST00000330494 WNT10AQ9GZT5 417 aa8.54□□□□□ -1.04
CHD3-201ENST00000330494 LINC00527Q9UJ94 153 aa8.54□□□□□ -1.04
CHD3-201ENST00000330494 IGKV1-9A0A0C4DH69 117 aa8.54□□□□□ -1.04
CHD3-201ENST00000330494 RBFOX2O43251 390 aaKnown RBP eCLIP8.54□□□□□ -1.043e-6■■■■□ 21.5
CHD3-201ENST00000330494 LEPROTL1O95214 131 aa8.54□□□□□ -1.04
CHD3-201ENST00000330494 EFEMP2O95967 443 aa8.54□□□□□ -1.04
CHD3-201ENST00000330494 CA1P00915 261 aaPredicted RBP8.54□□□□□ -1.04
CHD3-201ENST00000330494 HERPUD1Q15011 391 aa8.54□□□□□ -1.04
CHD3-201ENST00000330494 C5orf24Q7Z6I8 188 aa8.54□□□□□ -1.04
CHD3-201ENST00000330494 RNASE6Q93091 150 aaKnown RBP8.54□□□□□ -1.04
CHD3-201ENST00000330494 GCHFRP30047 84 aa8.54□□□□□ -1.04
CHD3-201ENST00000330494 PPP1R27Q86WC6 154 aa8.54□□□□□ -1.04
CHD3-201ENST00000330494 SLC25A33Q9BSK2 321 aa8.54□□□□□ -1.04
CHD3-201ENST00000330494 SAA2-SAA4A0A096LPE2 208 aa8.53□□□□□ -1.04
CHD3-201ENST00000330494 A0A0A6YYD4 124 aa8.53□□□□□ -1.04
CHD3-201ENST00000330494 SAA2P0DJI9 122 aaPredicted RBP8.53□□□□□ -1.04
CHD3-201ENST00000330494 SRD5A1P18405 259 aa8.53□□□□□ -1.04
CHD3-201ENST00000330494 UCP3P55916 312 aa8.53□□□□□ -1.04
CHD3-201ENST00000330494 PSG9Q00887 426 aa8.53□□□□□ -1.04
CHD3-201ENST00000330494 WDR82Q6UXN9 313 aa8.53□□□□□ -1.04
CHD3-201ENST00000330494 WFDC12Q8WWY7 111 aa8.53□□□□□ -1.04
CHD3-201ENST00000330494 CLDN16Q9Y5I7 305 aa8.53□□□□□ -1.04
CHD3-201ENST00000330494 CENPWQ5EE01 88 aa8.53□□□□□ -1.04
CHD3-201ENST00000330494 TRAV30A0A087WSZ9 112 aa8.53□□□□□ -1.04
CHD3-201ENST00000330494 FAM90A26D6RGX4 464 aa8.53□□□□□ -1.04
CHD3-201ENST00000330494 SMIM13P0DJ93 91 aa8.53□□□□□ -1.04
CHD3-201ENST00000330494 NEU4Q8WWR8 484 aaPredicted RBP8.53□□□□□ -1.04
CHD3-201ENST00000330494 SPSB4Q96A44 273 aa8.53□□□□□ -1.04
CHD3-201ENST00000330494 GP6Q9HCN6 339 aa8.53□□□□□ -1.04
CHD3-201ENST00000330494 SELLP14151 372 aa8.53□□□□□ -1.04
CHD3-201ENST00000330494 DLX6P56179 175 aa8.53□□□□□ -1.04
CHD3-201ENST00000330494 CD69Q07108 199 aa8.53□□□□□ -1.04
CHD3-201ENST00000330494 COLCA1Q6ZS62 124 aa8.53□□□□□ -1.04
CHD3-201ENST00000330494 ARPC1AQ92747 370 aa8.53□□□□□ -1.04
CHD3-201ENST00000330494 ST6GALNAC6Q969X2 333 aa8.53□□□□□ -1.04
CHD3-201ENST00000330494 NPCDR1Q9BY65 106 aa8.53□□□□□ -1.04
CHD3-201ENST00000330494 FRMPD3Q5JV73 1810 aa8.53□□□□□ -1.04
CHD3-201ENST00000330494 FOLR2P14207 255 aa8.53□□□□□ -1.04
CHD3-201ENST00000330494 MST1P26927 711 aa8.53□□□□□ -1.04
CHD3-201ENST00000330494 TMEM183AQ8IXX5 376 aa8.53□□□□□ -1.04
CHD3-201ENST00000330494 FOXD3Q9UJU5 478 aaPredicted RBP8.53□□□□□ -1.04
CHD3-201ENST00000330494 NCOR1O75376 2440 aa8.53□□□□□ -1.04
CHD3-201ENST00000330494 COX6CP09669 75 aa8.53□□□□□ -1.04
CHD3-201ENST00000330494 RPRMQ9NS64 109 aa8.53□□□□□ -1.04
CHD3-201ENST00000330494 BEX4Q9NWD9 120 aaPredicted RBP8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms