RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 CTRB2Q6GPI1 263 aa11.73□□□□□ -0.53
LIG1-219ENST00000600055 H2BFWTQ7Z2G1 175 aa11.73□□□□□ -0.53
LIG1-219ENST00000600055 SLC25A42Q86VD7 318 aa11.73□□□□□ -0.53
LIG1-219ENST00000600055 CADM3Q8N126 398 aa11.73□□□□□ -0.53
LIG1-219ENST00000600055 DCUN1D4Q92564 292 aa11.73□□□□□ -0.53
LIG1-219ENST00000600055 DLX4Q92988 240 aaPredicted RBP11.73□□□□□ -0.53
LIG1-219ENST00000600055 USMG5Q96IX5 58 aa11.73□□□□□ -0.53
LIG1-219ENST00000600055 TSC22D3Q99576 134 aa11.73□□□□□ -0.53
LIG1-219ENST00000600055 QTRT1Q9BXR0 403 aaKnown RBP11.73□□□□□ -0.53
LIG1-219ENST00000600055 OR51B2Q9Y5P1 312 aa11.73□□□□□ -0.53
LIG1-219ENST00000600055 TEX13DA0A0J9YY54 714 aaPredicted RBP11.72□□□□□ -0.53
LIG1-219ENST00000600055 TRBV12-3P01733 135 aa11.72□□□□□ -0.53
LIG1-219ENST00000600055 FGF2P09038 288 aa11.72□□□□□ -0.53
LIG1-219ENST00000600055 TRAPPC2P0DI81 140 aa11.72□□□□□ -0.53
LIG1-219ENST00000600055 TRAPPC2BP0DI82 140 aa11.72□□□□□ -0.53
LIG1-219ENST00000600055 UCP1P25874 307 aa11.72□□□□□ -0.53
LIG1-219ENST00000600055 HOXD3P31249 432 aaPredicted RBP11.72□□□□□ -0.53
LIG1-219ENST00000600055 TRIM16LQ309B1 348 aa11.72□□□□□ -0.53
LIG1-219ENST00000600055 ZNF57Q68EA5 555 aaPredicted RBP11.72□□□□□ -0.53
LIG1-219ENST00000600055 OR1L8Q8NGR8 309 aa11.72□□□□□ -0.53
LIG1-219ENST00000600055 TMEM230Q96A57 120 aa11.72□□□□□ -0.53
LIG1-219ENST00000600055 FANCD2OSQ96PS1 177 aa11.72□□□□□ -0.53
LIG1-219ENST00000600055 HINT2Q9BX68 163 aa11.72□□□□□ -0.53
LIG1-219ENST00000600055 NAA60Q9H7X0 242 aa11.72□□□□□ -0.53
LIG1-219ENST00000600055 NDUFA4L2Q9NRX3 87 aa11.72□□□□□ -0.53
LIG1-219ENST00000600055 TMEM14BQ9NUH8 114 aa11.72□□□□□ -0.53
LIG1-219ENST00000600055 PRNDQ9UKY0 176 aa11.72□□□□□ -0.53
LIG1-219ENST00000600055 CRYM-AS1A6NIL9 109 aa11.71□□□□□ -0.53
LIG1-219ENST00000600055 FAM223BA6NKX1 122 aa11.71□□□□□ -0.53
LIG1-219ENST00000600055 C15orf61A6NNL5 157 aa11.71□□□□□ -0.53
LIG1-219ENST00000600055 CENPXA8MT69 81 aa11.71□□□□□ -0.53
LIG1-219ENST00000600055 NDUFB8O95169 186 aa11.71□□□□□ -0.53
LIG1-219ENST00000600055 DUS4LO95620 317 aaKnown RBP11.71□□□□□ -0.53
LIG1-219ENST00000600055 KRTAP10-11P60412 298 aa11.71□□□□□ -0.53
LIG1-219ENST00000600055 ATP5G2Q06055 141 aa11.71□□□□□ -0.53
LIG1-219ENST00000600055 WT1-ASQ06250 92 aa11.71□□□□□ -0.53
LIG1-219ENST00000600055 ZNF343Q6P1L6 599 aa11.71□□□□□ -0.53
LIG1-219ENST00000600055 FAM223AQ8IWN6 122 aa11.71□□□□□ -0.53
LIG1-219ENST00000600055 OR4A16Q8NH70 328 aa11.71□□□□□ -0.53
LIG1-219ENST00000600055 LHFPL5Q8TAF8 219 aa11.71□□□□□ -0.53
LIG1-219ENST00000600055 GLYATL2Q8WU03 294 aa11.71□□□□□ -0.53
LIG1-219ENST00000600055 MCRIP2Q9BUT9 160 aaKnown RBP11.71□□□□□ -0.53
LIG1-219ENST00000600055 TMEM222Q9H0R3 208 aa11.71□□□□□ -0.53
LIG1-219ENST00000600055 A0A0G2JRQ6 117 aa11.7□□□□□ -0.54
LIG1-219ENST00000600055 P0C879 139 aa11.7□□□□□ -0.54
LIG1-219ENST00000600055 OR13C7P0DN81 318 aa11.7□□□□□ -0.54
LIG1-219ENST00000600055 DEFA4P12838 97 aa11.7□□□□□ -0.54
LIG1-219ENST00000600055 AKR1C2P52895 323 aa11.7□□□□□ -0.54
LIG1-219ENST00000600055 EXOSC2Q13868 293 aaKnown RBP11.7□□□□□ -0.54
LIG1-219ENST00000600055 C15orf32Q32M92 178 aa11.7□□□□□ -0.54
LIG1-219ENST00000600055 NECAP1Q8NC96 275 aa11.7□□□□□ -0.54
LIG1-219ENST00000600055 SCGB3A2Q96PL1 93 aa11.7□□□□□ -0.54
LIG1-219ENST00000600055 RANGRFQ9HD47 186 aaPredicted RBP11.7□□□□□ -0.54
LIG1-219ENST00000600055 PRR13Q9NZ81 148 aa11.7□□□□□ -0.54
LIG1-219ENST00000600055 PEF1Q9UBV8 284 aaKnown RBP11.7□□□□□ -0.54
LIG1-219ENST00000600055 FBXL7Q9UJT9 491 aa11.7□□□□□ -0.54
LIG1-219ENST00000600055 DMRT1Q9Y5R6 373 aa11.7□□□□□ -0.54
LIG1-219ENST00000600055 S4R3C0 116 aa11.7□□□□□ -0.54
LIG1-219ENST00000600055 IGLV11-55A0A075B6I3 123 aa11.69□□□□□ -0.54
LIG1-219ENST00000600055 A0A0B4J293 547 aa11.69□□□□□ -0.54
LIG1-219ENST00000600055 LINC00854A0A1B0GVQ3 168 aa11.69□□□□□ -0.54
LIG1-219ENST00000600055 SEC14L6B5MCN3 397 aa11.69□□□□□ -0.54
LIG1-219ENST00000600055 OVOL1O14753 267 aa11.69□□□□□ -0.54
LIG1-219ENST00000600055 WIPF1O43516 503 aa11.69□□□□□ -0.54
LIG1-219ENST00000600055 B3GALNT1O75752 331 aa11.69□□□□□ -0.54
LIG1-219ENST00000600055 IGHV3-23P01764 117 aa11.69□□□□□ -0.54
LIG1-219ENST00000600055 AKR1C4P17516 323 aa11.69□□□□□ -0.54
LIG1-219ENST00000600055 KLK9Q2XQG4 91 aa11.69□□□□□ -0.54
LIG1-219ENST00000600055 SELENOHQ8IZQ5 122 aaKnown RBP11.69□□□□□ -0.54
LIG1-219ENST00000600055 OR5B3Q8NH48 314 aa11.69□□□□□ -0.54
LIG1-219ENST00000600055 C7orf50Q9BRJ6 194 aaKnown RBP11.69□□□□□ -0.54
LIG1-219ENST00000600055 SRSF8Q9BRL6 282 aaKnown RBP11.69□□□□□ -0.54
LIG1-219ENST00000600055 FKBP11Q9NYL4 201 aa11.69□□□□□ -0.54
LIG1-219ENST00000600055 KLK9Q9UKQ9 250 aa11.69□□□□□ -0.54
LIG1-219ENST00000600055 NOTCH3Q9UM47 2321 aa11.68□□□□□ -0.54
LIG1-219ENST00000600055 NAP1L6A6NFF2 107 aa11.68□□□□□ -0.54
LIG1-219ENST00000600055 CDS2O95674 445 aa11.68□□□□□ -0.54
LIG1-219ENST00000600055 DHFRP00374 187 aa11.68□□□□□ -0.54
LIG1-219ENST00000600055 MECP2P51608 486 aaKnown RBP11.68□□□□□ -0.54
LIG1-219ENST00000600055 DHODHQ02127 395 aa11.68□□□□□ -0.54
LIG1-219ENST00000600055 TMEM187Q14656 261 aa11.68□□□□□ -0.54
LIG1-219ENST00000600055 SPINK9Q5DT21 86 aa11.68□□□□□ -0.54
LIG1-219ENST00000600055 THOC7Q6I9Y2 204 aaKnown RBP11.68□□□□□ -0.54
LIG1-219ENST00000600055 SGPP2Q8IWX5 399 aa11.68□□□□□ -0.54
LIG1-219ENST00000600055 LSM10Q969L4 123 aaKnown RBP11.68□□□□□ -0.54
LIG1-219ENST00000600055 AURKAIP1Q9NWT8 199 aaPredicted RBP11.68□□□□□ -0.54
LIG1-219ENST00000600055 NOTCH1P46531 2555 aa11.67□□□□□ -0.54
LIG1-219ENST00000600055 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.67□□□□□ -0.54
LIG1-219ENST00000600055 MFSD2BA6NFX1 497 aa11.67□□□□□ -0.54
LIG1-219ENST00000600055 ATG12O94817 140 aa11.67□□□□□ -0.54
LIG1-219ENST00000600055 IL7P13232 177 aa11.67□□□□□ -0.54
LIG1-219ENST00000600055 HIST1H1BP16401 226 aaKnown RBP11.67□□□□□ -0.54
LIG1-219ENST00000600055 CCR6P51684 374 aa11.67□□□□□ -0.54
LIG1-219ENST00000600055 MFAP2P55001 183 aa11.67□□□□□ -0.54
LIG1-219ENST00000600055 HSPE1P61604 102 aaKnown RBP11.67□□□□□ -0.54
LIG1-219ENST00000600055 SUPT4H1P63272 117 aaKnown RBP11.67□□□□□ -0.54
LIG1-219ENST00000600055 EGFEM1PQ0D2K5 195 aa11.67□□□□□ -0.54
LIG1-219ENST00000600055 C9orf66Q5T8R8 295 aa11.67□□□□□ -0.54
LIG1-219ENST00000600055 TMEM268Q5VZI3 342 aa11.67□□□□□ -0.54
LIG1-219ENST00000600055 Q6ZRM9 215 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms