RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 ATP5G2Q06055 141 aa8.58□□□□□ -1.04
LIG1-211ENST00000596457 TSC22D3Q99576 134 aa8.58□□□□□ -1.04
LIG1-211ENST00000596457 SDHCQ99643 169 aaPredicted RBP8.58□□□□□ -1.04
LIG1-211ENST00000596457 QTRT1Q9BXR0 403 aaKnown RBP8.58□□□□□ -1.04
LIG1-211ENST00000596457 AKIP1Q9NQ31 210 aa8.58□□□□□ -1.04
LIG1-211ENST00000596457 PRR13Q9NZ81 148 aa8.58□□□□□ -1.04
LIG1-211ENST00000596457 PRNDQ9UKY0 176 aa8.58□□□□□ -1.04
LIG1-211ENST00000596457 ZNF257Q9Y2Q1 563 aa8.58□□□□□ -1.04
LIG1-211ENST00000596457 KCNIP3Q9Y2W7 256 aa8.58□□□□□ -1.04
LIG1-211ENST00000596457 S4R3C0 116 aa8.58□□□□□ -1.04
LIG1-211ENST00000596457 DBX1A6NMT0 343 aa8.57□□□□□ -1.04
LIG1-211ENST00000596457 NPIPB5A8MRT5 1133 aa8.57□□□□□ -1.04
LIG1-211ENST00000596457 CENPXA8MT69 81 aa8.57□□□□□ -1.04
LIG1-211ENST00000596457 ATG12O94817 140 aa8.57□□□□□ -1.04
LIG1-211ENST00000596457 DHFRP00374 187 aa8.57□□□□□ -1.04
LIG1-211ENST00000596457 IGKV1-5P01602 117 aa8.57□□□□□ -1.04
LIG1-211ENST00000596457 IGHV3-23P01764 117 aa8.57□□□□□ -1.04
LIG1-211ENST00000596457 HSPB1P04792 205 aaKnown RBP8.57□□□□□ -1.04
LIG1-211ENST00000596457 OR8U8P0C7N1 319 aa8.57□□□□□ -1.04
LIG1-211ENST00000596457 OR13C7P0DN81 318 aa8.57□□□□□ -1.04
LIG1-211ENST00000596457 UCP1P25874 307 aa8.57□□□□□ -1.04
LIG1-211ENST00000596457 RUNX1Q01196 453 aa8.57□□□□□ -1.04
LIG1-211ENST00000596457 DHODHQ02127 395 aa8.57□□□□□ -1.04
LIG1-211ENST00000596457 SPINK9Q5DT21 86 aa8.57□□□□□ -1.04
LIG1-211ENST00000596457 TMEM268Q5VZI3 342 aa8.57□□□□□ -1.04
LIG1-211ENST00000596457 WFDC9Q8NEX5 89 aa8.57□□□□□ -1.04
LIG1-211ENST00000596457 TMEM230Q96A57 120 aa8.57□□□□□ -1.04
LIG1-211ENST00000596457 RRNAD1Q96FB5 475 aaKnown RBP8.57□□□□□ -1.04
LIG1-211ENST00000596457 RCC1LQ96I51 464 aaKnown RBP8.57□□□□□ -1.04
LIG1-211ENST00000596457 USMG5Q96IX5 58 aa8.57□□□□□ -1.04
LIG1-211ENST00000596457 TMEM222Q9H0R3 208 aa8.57□□□□□ -1.04
LIG1-211ENST00000596457 FKBP11Q9NYL4 201 aa8.57□□□□□ -1.04
LIG1-211ENST00000596457 FBXL7Q9UJT9 491 aa8.57□□□□□ -1.04
LIG1-211ENST00000596457 C15orf61A6NNL5 157 aa8.56□□□□□ -1.04
LIG1-211ENST00000596457 B3GALNT1O75752 331 aa8.56□□□□□ -1.04
LIG1-211ENST00000596457 NDUFB8O95169 186 aa8.56□□□□□ -1.04
LIG1-211ENST00000596457 PRB2P02812 416 aaPredicted RBP8.56□□□□□ -1.04
LIG1-211ENST00000596457 IL7P13232 177 aa8.56□□□□□ -1.04
LIG1-211ENST00000596457 CTRB1P17538 263 aa8.56□□□□□ -1.04
LIG1-211ENST00000596457 EXOSC2Q13868 293 aaKnown RBP8.56□□□□□ -1.04
LIG1-211ENST00000596457 SAMD5Q5TGI4 173 aa8.56□□□□□ -1.04
LIG1-211ENST00000596457 CTRB2Q6GPI1 263 aa8.56□□□□□ -1.04
LIG1-211ENST00000596457 SLC25A24Q6NUK1 477 aa8.56□□□□□ -1.04
LIG1-211ENST00000596457 REC114Q7Z4M0 266 aa8.56□□□□□ -1.04
LIG1-211ENST00000596457 SELENOHQ8IZQ5 122 aaKnown RBP8.56□□□□□ -1.04
LIG1-211ENST00000596457 LHFPL5Q8TAF8 219 aa8.56□□□□□ -1.04
LIG1-211ENST00000596457 GLYATL2Q8WU03 294 aa8.56□□□□□ -1.04
LIG1-211ENST00000596457 DCUN1D4Q92564 292 aa8.56□□□□□ -1.04
LIG1-211ENST00000596457 TMEM56Q96MV1 263 aa8.56□□□□□ -1.04
LIG1-211ENST00000596457 BATF3Q9NR55 127 aa8.56□□□□□ -1.04
LIG1-211ENST00000596457 NDUFA4L2Q9NRX3 87 aa8.56□□□□□ -1.04
LIG1-211ENST00000596457 TNCP24821 2201 aa8.56□□□□□ -1.04
LIG1-211ENST00000596457 A0A0G2JRQ6 117 aa8.55□□□□□ -1.04
LIG1-211ENST00000596457 IGLC7A0M8Q6 106 aa8.55□□□□□ -1.04
LIG1-211ENST00000596457 NAP1L6A6NFF2 107 aa8.55□□□□□ -1.04
LIG1-211ENST00000596457 FAM223BA6NKX1 122 aa8.55□□□□□ -1.04
LIG1-211ENST00000596457 CDS2O95674 445 aa8.55□□□□□ -1.04
LIG1-211ENST00000596457 IFNA17P01571 189 aa8.55□□□□□ -1.04
LIG1-211ENST00000596457 CRYGCP07315 174 aa8.55□□□□□ -1.04
LIG1-211ENST00000596457 ANXA3P12429 323 aa8.55□□□□□ -1.04
LIG1-211ENST00000596457 VAMP1P23763 118 aa8.55□□□□□ -1.04
LIG1-211ENST00000596457 HOXD3P31249 432 aaPredicted RBP8.55□□□□□ -1.04
LIG1-211ENST00000596457 TMEM187Q14656 261 aa8.55□□□□□ -1.04
LIG1-211ENST00000596457 C15orf32Q32M92 178 aa8.55□□□□□ -1.04
LIG1-211ENST00000596457 FAM223AQ8IWN6 122 aa8.55□□□□□ -1.04
LIG1-211ENST00000596457 NECAP1Q8NC96 275 aa8.55□□□□□ -1.04
LIG1-211ENST00000596457 DLX4Q92988 240 aaPredicted RBP8.55□□□□□ -1.04
LIG1-211ENST00000596457 RBPMSQ93062 196 aaKnown RBP8.55□□□□□ -1.04
LIG1-211ENST00000596457 LSM10Q969L4 123 aaKnown RBP8.55□□□□□ -1.04
LIG1-211ENST00000596457 FANCD2OSQ96PS1 177 aa8.55□□□□□ -1.04
LIG1-211ENST00000596457 PDCD10Q9BUL8 212 aa8.55□□□□□ -1.04
LIG1-211ENST00000596457 MCRIP2Q9BUT9 160 aaKnown RBP8.55□□□□□ -1.04
LIG1-211ENST00000596457 RANGRFQ9HD47 186 aaPredicted RBP8.55□□□□□ -1.04
LIG1-211ENST00000596457 TMEM14BQ9NUH8 114 aa8.55□□□□□ -1.04
LIG1-211ENST00000596457 PEF1Q9UBV8 284 aaKnown RBP8.55□□□□□ -1.04
LIG1-211ENST00000596457 CMYA5Q8N3K9 4069 aa8.54□□□□□ -1.04
LIG1-211ENST00000596457 TRBV9A0A0B4J1U6 114 aa8.54□□□□□ -1.04
LIG1-211ENST00000596457 IGHV3-21A0A0B4J1V1 117 aa8.54□□□□□ -1.04
LIG1-211ENST00000596457 A0A0B4J293 547 aa8.54□□□□□ -1.04
LIG1-211ENST00000596457 SEC14L6B5MCN3 397 aa8.54□□□□□ -1.04
LIG1-211ENST00000596457 OVOL1O14753 267 aa8.54□□□□□ -1.04
LIG1-211ENST00000596457 ST8SIA3O43173 380 aa8.54□□□□□ -1.04
LIG1-211ENST00000596457 NXPH3O95157 252 aa8.54□□□□□ -1.04
LIG1-211ENST00000596457 BRI3O95415 125 aa8.54□□□□□ -1.04
LIG1-211ENST00000596457 DUS4LO95620 317 aaKnown RBP8.54□□□□□ -1.04
LIG1-211ENST00000596457 TRBV12-3P01733 135 aa8.54□□□□□ -1.04
LIG1-211ENST00000596457 HIST1H1BP16401 226 aaKnown RBP8.54□□□□□ -1.04
LIG1-211ENST00000596457 HSPE1P61604 102 aaKnown RBP8.54□□□□□ -1.04
LIG1-211ENST00000596457 WT1-ASQ06250 92 aa8.54□□□□□ -1.04
LIG1-211ENST00000596457 FHL3Q13643 280 aa8.54□□□□□ -1.04
LIG1-211ENST00000596457 RBMS2Q15434 407 aaKnown RBP8.54□□□□□ -1.04
LIG1-211ENST00000596457 BEAN1Q3B7T3 259 aa8.54□□□□□ -1.04
LIG1-211ENST00000596457 KPRPQ5T749 579 aaPredicted RBP8.54□□□□□ -1.04
LIG1-211ENST00000596457 THOC7Q6I9Y2 204 aaKnown RBP8.54□□□□□ -1.04
LIG1-211ENST00000596457 ZNF343Q6P1L6 599 aa8.54□□□□□ -1.04
LIG1-211ENST00000596457 CADM3Q8N126 398 aa8.54□□□□□ -1.04
LIG1-211ENST00000596457 CENPSQ8N2Z9 138 aa8.54□□□□□ -1.04
LIG1-211ENST00000596457 SLC35G3Q8N808 338 aa8.54□□□□□ -1.04
LIG1-211ENST00000596457 OR5B3Q8NH48 314 aa8.54□□□□□ -1.04
LIG1-211ENST00000596457 DEDD2Q8WXF8 326 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms