RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 OR10W1Q8NGF6 305 aa11.22□□□□□ -0.61
VRK3-206ENST00000594090 OR1L8Q8NGR8 309 aa11.22□□□□□ -0.61
VRK3-206ENST00000594090 DCUN1D4Q92564 292 aa11.22□□□□□ -0.61
VRK3-206ENST00000594090 RANGRFQ9HD47 186 aaPredicted RBP11.22□□□□□ -0.61
VRK3-206ENST00000594090 TMEM14BQ9NUH8 114 aa11.22□□□□□ -0.61
VRK3-206ENST00000594090 OR51B2Q9Y5P1 312 aa11.22□□□□□ -0.61
VRK3-206ENST00000594090 ANKRD34BA5PLL1 514 aa11.21□□□□□ -0.61
VRK3-206ENST00000594090 DBX1A6NMT0 343 aa11.21□□□□□ -0.61
VRK3-206ENST00000594090 SEC14L6B5MCN3 397 aa11.21□□□□□ -0.61
VRK3-206ENST00000594090 WIPF1O43516 503 aa11.21□□□□□ -0.61
VRK3-206ENST00000594090 OR2J3O76001 311 aa11.21□□□□□ -0.61
VRK3-206ENST00000594090 PRB2P02812 416 aaPredicted RBP11.21□□□□□ -0.61
VRK3-206ENST00000594090 OR5AC1P0C628 307 aa11.21□□□□□ -0.61
VRK3-206ENST00000594090 TRAPPC2P0DI81 140 aa11.21□□□□□ -0.61
VRK3-206ENST00000594090 TRAPPC2BP0DI82 140 aa11.21□□□□□ -0.61
VRK3-206ENST00000594090 HOXD3P31249 432 aaPredicted RBP11.21□□□□□ -0.61
VRK3-206ENST00000594090 EGFEM1PQ0D2K5 195 aa11.21□□□□□ -0.61
VRK3-206ENST00000594090 EXOSC2Q13868 293 aaKnown RBP11.21□□□□□ -0.61
VRK3-206ENST00000594090 TRIM16LQ309B1 348 aa11.21□□□□□ -0.61
VRK3-206ENST00000594090 DEDD2Q8WXF8 326 aa11.21□□□□□ -0.61
VRK3-206ENST00000594090 DLX4Q92988 240 aaPredicted RBP11.21□□□□□ -0.61
VRK3-206ENST00000594090 FANCD2OSQ96PS1 177 aa11.21□□□□□ -0.61
VRK3-206ENST00000594090 NAA60Q9H7X0 242 aa11.21□□□□□ -0.61
VRK3-206ENST00000594090 NDUFA4L2Q9NRX3 87 aa11.21□□□□□ -0.61
VRK3-206ENST00000594090 FKBP11Q9NYL4 201 aa11.21□□□□□ -0.61
VRK3-206ENST00000594090 TEX13DA0A0J9YY54 714 aaPredicted RBP11.2□□□□□ -0.62
VRK3-206ENST00000594090 CRYM-AS1A6NIL9 109 aa11.2□□□□□ -0.62
VRK3-206ENST00000594090 OVOL1O14753 267 aa11.2□□□□□ -0.62
VRK3-206ENST00000594090 IGKV1-5P01602 117 aa11.2□□□□□ -0.62
VRK3-206ENST00000594090 TRBV12-3P01733 135 aa11.2□□□□□ -0.62
VRK3-206ENST00000594090 DEFA4P12838 97 aa11.2□□□□□ -0.62
VRK3-206ENST00000594090 AKR1C2P52895 323 aa11.2□□□□□ -0.62
VRK3-206ENST00000594090 ATP5G2Q06055 141 aa11.2□□□□□ -0.62
VRK3-206ENST00000594090 KLK9Q2XQG4 91 aa11.2□□□□□ -0.62
VRK3-206ENST00000594090 C15orf32Q32M92 178 aa11.2□□□□□ -0.62
VRK3-206ENST00000594090 PDLIM3Q53GG5 364 aaPredicted RBP11.2□□□□□ -0.62
VRK3-206ENST00000594090 C9orf66Q5T8R8 295 aa11.2□□□□□ -0.62
VRK3-206ENST00000594090 HSD17B13Q7Z5P4 300 aaPredicted RBP11.2□□□□□ -0.62
VRK3-206ENST00000594090 OR5B3Q8NH48 314 aa11.2□□□□□ -0.62
VRK3-206ENST00000594090 SCGB3A2Q96PL1 93 aa11.2□□□□□ -0.62
VRK3-206ENST00000594090 HINT2Q9BX68 163 aa11.2□□□□□ -0.62
VRK3-206ENST00000594090 PEF1Q9UBV8 284 aaKnown RBP11.2□□□□□ -0.62
VRK3-206ENST00000594090 KLK9Q9UKQ9 250 aa11.2□□□□□ -0.62
VRK3-206ENST00000594090 IGLV11-55A0A075B6I3 123 aa11.19□□□□□ -0.62
VRK3-206ENST00000594090 ATG12O94817 140 aa11.19□□□□□ -0.62
VRK3-206ENST00000594090 P0C879 139 aa11.19□□□□□ -0.62
VRK3-206ENST00000594090 HIST1H1BP16401 226 aaKnown RBP11.19□□□□□ -0.62
VRK3-206ENST00000594090 ZP3P21754 424 aa11.19□□□□□ -0.62
VRK3-206ENST00000594090 WT1-ASQ06250 92 aa11.19□□□□□ -0.62
VRK3-206ENST00000594090 BAK1Q16611 211 aa11.19□□□□□ -0.62
VRK3-206ENST00000594090 IZUMO4Q1ZYL8 232 aa11.19□□□□□ -0.62
VRK3-206ENST00000594090 ZNF57Q68EA5 555 aaPredicted RBP11.19□□□□□ -0.62
VRK3-206ENST00000594090 REC114Q7Z4M0 266 aa11.19□□□□□ -0.62
VRK3-206ENST00000594090 OR4A16Q8NH70 328 aa11.19□□□□□ -0.62
VRK3-206ENST00000594090 GLYATL2Q8WU03 294 aa11.19□□□□□ -0.62
VRK3-206ENST00000594090 LSM10Q969L4 123 aaKnown RBP11.19□□□□□ -0.62
VRK3-206ENST00000594090 TMEM230Q96A57 120 aa11.19□□□□□ -0.62
VRK3-206ENST00000594090 SDHCQ99643 169 aaPredicted RBP11.19□□□□□ -0.62
VRK3-206ENST00000594090 TMEM222Q9H0R3 208 aa11.19□□□□□ -0.62
VRK3-206ENST00000594090 AURKAIP1Q9NWT8 199 aaPredicted RBP11.19□□□□□ -0.62
VRK3-206ENST00000594090 FBXL7Q9UJT9 491 aa11.19□□□□□ -0.62
VRK3-206ENST00000594090 A0A0G2JRQ6 117 aa11.18□□□□□ -0.62
VRK3-206ENST00000594090 CDS2O95674 445 aa11.18□□□□□ -0.62
VRK3-206ENST00000594090 OR13C7P0DN81 318 aa11.18□□□□□ -0.62
VRK3-206ENST00000594090 KRTAP10-11P60412 298 aa11.18□□□□□ -0.62
VRK3-206ENST00000594090 TRIQKQ629K1 86 aa11.18□□□□□ -0.62
VRK3-206ENST00000594090 SGPP2Q8IWX5 399 aa11.18□□□□□ -0.62
VRK3-206ENST00000594090 LHFPL5Q8TAF8 219 aa11.18□□□□□ -0.62
VRK3-206ENST00000594090 TMEM56Q96MV1 263 aa11.18□□□□□ -0.62
VRK3-206ENST00000594090 NOTCH1P46531 2555 aa11.18□□□□□ -0.62
VRK3-206ENST00000594090 NOTCH3Q9UM47 2321 aa11.18□□□□□ -0.62
VRK3-206ENST00000594090 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.18□□□□□ -0.62
VRK3-206ENST00000594090 A6NHS1 94 aa11.18□□□□□ -0.62
VRK3-206ENST00000594090 NDUFB8O95169 186 aa11.18□□□□□ -0.62
VRK3-206ENST00000594090 MECP2P51608 486 aaKnown RBP11.18□□□□□ -0.62
VRK3-206ENST00000594090 DHODHQ02127 395 aa11.18□□□□□ -0.62
VRK3-206ENST00000594090 FAM209BQ5JX69 171 aa11.18□□□□□ -0.62
VRK3-206ENST00000594090 ZNF429Q86V71 674 aa11.18□□□□□ -0.62
VRK3-206ENST00000594090 RNASE11Q8TAA1 199 aaKnown RBP11.18□□□□□ -0.62
VRK3-206ENST00000594090 RBPMSQ93062 196 aaKnown RBP11.18□□□□□ -0.62
VRK3-206ENST00000594090 RRNAD1Q96FB5 475 aaKnown RBP11.18□□□□□ -0.62
VRK3-206ENST00000594090 GALNT14Q96FL9 552 aa11.18□□□□□ -0.62
VRK3-206ENST00000594090 DMRT1Q9Y5R6 373 aa11.18□□□□□ -0.62
VRK3-206ENST00000594090 MFSD2BA6NFX1 497 aa11.17□□□□□ -0.62
VRK3-206ENST00000594090 BMPR1BO00238 502 aa11.17□□□□□ -0.62
VRK3-206ENST00000594090 INPP1P49441 399 aa11.17□□□□□ -0.62
VRK3-206ENST00000594090 HSPE1P61604 102 aaKnown RBP11.17□□□□□ -0.62
VRK3-206ENST00000594090 PRCDQ00LT1 54 aa11.17□□□□□ -0.62
VRK3-206ENST00000594090 ACSM6Q6P461 480 aa11.17□□□□□ -0.62
VRK3-206ENST00000594090 CCDC140Q96MF4 163 aa11.17□□□□□ -0.62
VRK3-206ENST00000594090 F11RQ9Y624 299 aaKnown RBP11.17□□□□□ -0.62
VRK3-206ENST00000594090 S4R3C0 116 aa11.17□□□□□ -0.62
VRK3-206ENST00000594090 A0A0B4J293 547 aa11.16□□□□□ -0.62
VRK3-206ENST00000594090 CYB5BO43169 146 aa11.16□□□□□ -0.62
VRK3-206ENST00000594090 ST8SIA3O43173 380 aa11.16□□□□□ -0.62
VRK3-206ENST00000594090 IGHV3-23P01764 117 aa11.16□□□□□ -0.62
VRK3-206ENST00000594090 AKR1C4P17516 323 aa11.16□□□□□ -0.62
VRK3-206ENST00000594090 INSL3P51460 131 aa11.16□□□□□ -0.62
VRK3-206ENST00000594090 SUPT4H1P63272 117 aaKnown RBP11.16□□□□□ -0.62
VRK3-206ENST00000594090 KLF5Q13887 457 aaPredicted RBP11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms