RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 ZNF430Q9H8G1 570 aaPredicted RBP8.17□□□□□ -1.1
VPS4B-202ENST00000588059 TRAV25A0A0B4J276 109 aa8.16□□□□□ -1.1
VPS4B-202ENST00000588059 A0A1B0GVY2 172 aa8.16□□□□□ -1.1
VPS4B-202ENST00000588059 ZNF320A2RRD8 509 aa8.16□□□□□ -1.1
VPS4B-202ENST00000588059 CREBL2O60519 120 aaPredicted RBP8.16□□□□□ -1.1
VPS4B-202ENST00000588059 SAA1P0DJI8 122 aaPredicted RBP8.16□□□□□ -1.1
VPS4B-202ENST00000588059 MED14OSP0DP75 135 aa8.16□□□□□ -1.1
VPS4B-202ENST00000588059 ZNF182P17025 639 aaPredicted RBP8.16□□□□□ -1.1
VPS4B-202ENST00000588059 ELK1P19419 428 aa8.16□□□□□ -1.1
VPS4B-202ENST00000588059 HLA-DMAP28067 261 aa8.16□□□□□ -1.1
VPS4B-202ENST00000588059 TAS2R46P59540 309 aa8.16□□□□□ -1.1
VPS4B-202ENST00000588059 OR4A47Q6IF82 309 aa8.16□□□□□ -1.1
VPS4B-202ENST00000588059 CLEC19AQ6UXS0 136 aa8.16□□□□□ -1.1
VPS4B-202ENST00000588059 GIMAP1Q8WWP7 306 aa8.16□□□□□ -1.1
VPS4B-202ENST00000588059 CMTM3Q96MX0 182 aa8.16□□□□□ -1.1
VPS4B-202ENST00000588059 ZNF2Q9BSG1 426 aaPredicted RBP8.16□□□□□ -1.1
VPS4B-202ENST00000588059 UBQLN2Q9UHD9 624 aa8.16□□□□□ -1.1
VPS4B-202ENST00000588059 FBXL7Q9UJT9 491 aa8.16□□□□□ -1.1
VPS4B-202ENST00000588059 ZNF257Q9Y2Q1 563 aa8.16□□□□□ -1.1
VPS4B-202ENST00000588059 S4R3C0 116 aa8.16□□□□□ -1.1
VPS4B-202ENST00000588059 DNAH11Q96DT5 4516 aa8.15□□□□□ -1.1
VPS4B-202ENST00000588059 HMX3A6NHT5 357 aa8.15□□□□□ -1.1
VPS4B-202ENST00000588059 TEX22C9J3V5 150 aa8.15□□□□□ -1.1
VPS4B-202ENST00000588059 SULT1C2O00338 296 aa8.15□□□□□ -1.1
VPS4B-202ENST00000588059 C8orf88P0DMB2 117 aa8.15□□□□□ -1.1
VPS4B-202ENST00000588059 CTRB1P17538 263 aa8.15□□□□□ -1.1
VPS4B-202ENST00000588059 FCGR2BP31994 310 aaPredicted RBP8.15□□□□□ -1.1
VPS4B-202ENST00000588059 ALDH3B2P48448 385 aa8.15□□□□□ -1.1
VPS4B-202ENST00000588059 NANOS2P60321 138 aaKnown RBP8.15□□□□□ -1.1
VPS4B-202ENST00000588059 CATR1Q13166 79 aa8.15□□□□□ -1.1
VPS4B-202ENST00000588059 EIF4EBP1Q13541 118 aaPredicted RBP8.15□□□□□ -1.1
VPS4B-202ENST00000588059 FAM106AQ4KMX7 169 aa8.15□□□□□ -1.1
VPS4B-202ENST00000588059 RNASE12Q5GAN4 147 aaKnown RBP8.15□□□□□ -1.1
VPS4B-202ENST00000588059 AADACL3Q5VUY0 350 aa8.15□□□□□ -1.1
VPS4B-202ENST00000588059 CTRB2Q6GPI1 263 aa8.15□□□□□ -1.1
VPS4B-202ENST00000588059 UNQ9165/PRO28630Q6UXU0 137 aa8.15□□□□□ -1.1
VPS4B-202ENST00000588059 RBPMS2Q6ZRY4 209 aaKnown RBP8.15□□□□□ -1.1
VPS4B-202ENST00000588059 SSX9Q7RTT3 188 aa8.15□□□□□ -1.1
VPS4B-202ENST00000588059 SLC25A42Q86VD7 318 aa8.15□□□□□ -1.1
VPS4B-202ENST00000588059 CLVS1Q8IUQ0 354 aaPredicted RBP8.15□□□□□ -1.1
VPS4B-202ENST00000588059 OR2C3Q8N628 320 aa8.15□□□□□ -1.1
VPS4B-202ENST00000588059 STPG3Q8N7X2 389 aa8.15□□□□□ -1.1
VPS4B-202ENST00000588059 ZBTB34Q8NCN2 500 aa8.15□□□□□ -1.1
VPS4B-202ENST00000588059 ANAPC10Q9UM13 185 aa8.15□□□□□ -1.1
VPS4B-202ENST00000588059 DNAH17Q9UFH2 4485 aa8.15□□□□□ -1.1
VPS4B-202ENST00000588059 S1PR2O95136 353 aa8.14□□□□□ -1.11
VPS4B-202ENST00000588059 HRASP01112 189 aa8.14□□□□□ -1.11
VPS4B-202ENST00000588059 RPL35AP18077 110 aaKnown RBP8.14□□□□□ -1.11
VPS4B-202ENST00000588059 NAT1P18440 290 aa8.14□□□□□ -1.11
VPS4B-202ENST00000588059 HRH1P35367 487 aa8.14□□□□□ -1.11
VPS4B-202ENST00000588059 TSPAN5P62079 268 aa8.14□□□□□ -1.11
VPS4B-202ENST00000588059 RBMS2Q15434 407 aaKnown RBP8.14□□□□□ -1.11
VPS4B-202ENST00000588059 MSMO1Q15800 293 aa8.14□□□□□ -1.11
VPS4B-202ENST00000588059 ODF3L2Q3SX64 289 aa8.14□□□□□ -1.11
VPS4B-202ENST00000588059 ZNF818PQ6ZRF7 136 aa8.14□□□□□ -1.11
VPS4B-202ENST00000588059 LINC00336Q6ZUF6 198 aa8.14□□□□□ -1.11
VPS4B-202ENST00000588059 MMD2Q8IY49 270 aa8.14□□□□□ -1.11
VPS4B-202ENST00000588059 SPAG16Q8N0X2 631 aa8.14□□□□□ -1.11
VPS4B-202ENST00000588059 OR6F1Q8NGZ6 308 aa8.14□□□□□ -1.11
VPS4B-202ENST00000588059 OR51H1Q8NH63 302 aa8.14□□□□□ -1.11
VPS4B-202ENST00000588059 VSTM2AQ8TAG5 236 aa8.14□□□□□ -1.11
VPS4B-202ENST00000588059 GPX8Q8TED1 209 aa8.14□□□□□ -1.11
VPS4B-202ENST00000588059 BORCS5Q969J3 196 aa8.14□□□□□ -1.11
VPS4B-202ENST00000588059 MARC2Q969Z3 335 aa8.14□□□□□ -1.11
VPS4B-202ENST00000588059 FANCD2OSQ96PS1 177 aa8.14□□□□□ -1.11
VPS4B-202ENST00000588059 OR2A7Q96R45 310 aa8.14□□□□□ -1.11
VPS4B-202ENST00000588059 SPAG8Q99932 426 aaPredicted RBP8.14□□□□□ -1.11
VPS4B-202ENST00000588059 SCPEP1Q9HB40 452 aa8.14□□□□□ -1.11
VPS4B-202ENST00000588059 EXTL2Q9UBQ6 330 aa8.14□□□□□ -1.11
VPS4B-202ENST00000588059 FBXL17Q9UF56 701 aa8.14□□□□□ -1.11
VPS4B-202ENST00000588059 NPIPB5A8MRT5 1133 aa8.13□□□□□ -1.11
VPS4B-202ENST00000588059 RGS5O15539 181 aa8.13□□□□□ -1.11
VPS4B-202ENST00000588059 NOL3O60936 208 aaKnown RBP8.13□□□□□ -1.11
VPS4B-202ENST00000588059 KBTBD11O94819 623 aa8.13□□□□□ -1.11
VPS4B-202ENST00000588059 GNRHRP30968 328 aa8.13□□□□□ -1.11
VPS4B-202ENST00000588059 RCVRNP35243 200 aa8.13□□□□□ -1.11
VPS4B-202ENST00000588059 TCTAP57738 103 aa8.13□□□□□ -1.11
VPS4B-202ENST00000588059 BRWD1-AS2P59051 145 aa8.13□□□□□ -1.11
VPS4B-202ENST00000588059 SPCS2Q15005 226 aa8.13□□□□□ -1.11
VPS4B-202ENST00000588059 ZNF585BQ52M93 769 aa8.13□□□□□ -1.11
VPS4B-202ENST00000588059 DHRS11Q6UWP2 260 aa8.13□□□□□ -1.11
VPS4B-202ENST00000588059 LYSMD2Q8IV50 215 aa8.13□□□□□ -1.11
VPS4B-202ENST00000588059 SLC38A6Q8IZM9 456 aa8.13□□□□□ -1.11
VPS4B-202ENST00000588059 C11orf45Q8TAV5 145 aa8.13□□□□□ -1.11
VPS4B-202ENST00000588059 EEF1AKMT3Q96AZ1 226 aa8.13□□□□□ -1.11
VPS4B-202ENST00000588059 MOB3AQ96BX8 217 aa8.13□□□□□ -1.11
VPS4B-202ENST00000588059 FYTTD1Q96QD9 318 aaKnown RBP8.13□□□□□ -1.11
VPS4B-202ENST00000588059 MFFQ9GZY8 342 aa8.13□□□□□ -1.11
VPS4B-202ENST00000588059 MAP6D1Q9H9H5 199 aa8.13□□□□□ -1.11
VPS4B-202ENST00000588059 HRASLSQ9HDD0 168 aa8.13□□□□□ -1.11
VPS4B-202ENST00000588059 MRPL27Q9P0M9 148 aaKnown RBP8.13□□□□□ -1.11
VPS4B-202ENST00000588059 A0A1B0GW64 132 aa8.12□□□□□ -1.11
VPS4B-202ENST00000588059 DPPA5A6NC42 116 aa8.12□□□□□ -1.11
VPS4B-202ENST00000588059 E7EUB6 86 aa8.12□□□□□ -1.11
VPS4B-202ENST00000588059 TSPAN4O14817 238 aa8.12□□□□□ -1.11
VPS4B-202ENST00000588059 RLN1P04808 185 aa8.12□□□□□ -1.11
VPS4B-202ENST00000588059 IFNA4P05014 189 aa8.12□□□□□ -1.11
VPS4B-202ENST00000588059 RPA2P15927 270 aa8.12□□□□□ -1.11
VPS4B-202ENST00000588059 RPL27AP46776 148 aaKnown RBP8.12□□□□□ -1.11
VPS4B-202ENST00000588059 KLK9Q2XQG4 91 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms