RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 SPANXN5Q5MJ07 72 aa24.35■■□□□ 1.49
CTCF-203ENST00000566078 SLC25A31Q9H0C2 315 aa24.35■■□□□ 1.49
CTCF-203ENST00000566078 HIPK2Q9H2X6 1198 aa24.35■■□□□ 1.49
CTCF-203ENST00000566078 NDUFA4L2Q9NRX3 87 aa24.35■■□□□ 1.49
CTCF-203ENST00000566078 NAV3Q8IVL0 2385 aa24.35■■□□□ 1.49
CTCF-203ENST00000566078 E7EUB6 86 aa24.35■■□□□ 1.49
CTCF-203ENST00000566078 EWSR1Q01844 656 aaKnown RBP eCLIP24.35■■□□□ 1.49
CTCF-203ENST00000566078 TMEM267Q0VDI3 215 aaPredicted RBP24.35■■□□□ 1.49
CTCF-203ENST00000566078 AANATQ16613 207 aa24.35■■□□□ 1.49
CTCF-203ENST00000566078 SPNS3Q6ZMD2 512 aa24.35■■□□□ 1.49
CTCF-203ENST00000566078 TMEM219Q86XT9 240 aa24.35■■□□□ 1.49
CTCF-203ENST00000566078 TMEM252Q8N6L7 170 aa24.35■■□□□ 1.49
CTCF-203ENST00000566078 RPL27AP46776 148 aaKnown RBP24.34■■□□□ 1.49
CTCF-203ENST00000566078 COMPP49747 757 aaPredicted RBP24.34■■□□□ 1.49
CTCF-203ENST00000566078 CLEC9AQ6UXN8 241 aa24.34■■□□□ 1.49
CTCF-203ENST00000566078 Q8N9W7 124 aa24.34■■□□□ 1.49
CTCF-203ENST00000566078 SLC25A33Q9BSK2 321 aa24.34■■□□□ 1.49
CTCF-203ENST00000566078 MXRA5Q9NR99 2828 aa24.34■■□□□ 1.49
CTCF-203ENST00000566078 CGB1A6NKQ9 187 aa24.33■■□□□ 1.49
CTCF-203ENST00000566078 LY86O95711 162 aa24.33■■□□□ 1.49
CTCF-203ENST00000566078 C4BPBP20851 252 aa24.33■■□□□ 1.49
CTCF-203ENST00000566078 OPCMLQ14982 345 aa24.33■■□□□ 1.49
CTCF-203ENST00000566078 OR4C12Q96R67 309 aa24.33■■□□□ 1.49
CTCF-203ENST00000566078 SSBP2P81877 361 aaPredicted RBP24.32■■□□□ 1.48
CTCF-203ENST00000566078 LY6EQ16553 131 aa24.32■■□□□ 1.48
CTCF-203ENST00000566078 OR10W1Q8NGF6 305 aa24.32■■□□□ 1.48
CTCF-203ENST00000566078 RBM14Q96PK6 669 aaKnown RBP24.32■■□□□ 1.48
CTCF-203ENST00000566078 A0A1B0GW64 132 aa24.32■■□□□ 1.48
CTCF-203ENST00000566078 KANTRA0A1W2PQU2 76 aa24.32■■□□□ 1.48
CTCF-203ENST00000566078 NHLH2Q02577 135 aa24.32■■□□□ 1.48
CTCF-203ENST00000566078 STX12Q86Y82 276 aa24.32■■□□□ 1.48
CTCF-203ENST00000566078 BSCL2Q96G97 398 aaPredicted RBP24.32■■□□□ 1.48
CTCF-203ENST00000566078 PAIP2BQ9ULR5 123 aaKnown RBP24.32■■□□□ 1.48
CTCF-203ENST00000566078 STRAPQ9Y3F4 350 aaKnown RBP24.32■■□□□ 1.48
CTCF-203ENST00000566078 BCL2L11O43521 198 aa24.31■■□□□ 1.48
CTCF-203ENST00000566078 CNIH1O95406 144 aa24.31■■□□□ 1.48
CTCF-203ENST00000566078 RASL11BQ9BPW5 248 aa24.31■■□□□ 1.48
CTCF-203ENST00000566078 MOB4Q9Y3A3 225 aa24.31■■□□□ 1.48
CTCF-203ENST00000566078 A0A1W2PN81 502 aa24.3■■□□□ 1.48
CTCF-203ENST00000566078 CST7O76096 145 aa24.3■■□□□ 1.48
CTCF-203ENST00000566078 METTL15P1P0C7V9 234 aa24.3■■□□□ 1.48
CTCF-203ENST00000566078 CHRNA7P36544 502 aa24.3■■□□□ 1.48
CTCF-203ENST00000566078 TMEM14EPQ6UXP3 125 aa24.3■■□□□ 1.48
CTCF-203ENST00000566078 SRSF12Q8WXF0 261 aaKnown RBP24.3■■□□□ 1.48
CTCF-203ENST00000566078 ARPC5LQ9BPX5 153 aa24.3■■□□□ 1.48
CTCF-203ENST00000566078 FBXL17Q9UF56 701 aa24.3■■□□□ 1.48
CTCF-203ENST00000566078 A6NDX4 124 aa24.29■■□□□ 1.48
CTCF-203ENST00000566078 IFNA10P01566 189 aa24.29■■□□□ 1.48
CTCF-203ENST00000566078 SRP14P37108 136 aaKnown RBP24.29■■□□□ 1.48
CTCF-203ENST00000566078 SULT1A1P50225 295 aa24.29■■□□□ 1.48
CTCF-203ENST00000566078 BAXQ07812 192 aa24.29■■□□□ 1.48
CTCF-203ENST00000566078 SMIM3Q9BZL3 60 aa24.29■■□□□ 1.48
CTCF-203ENST00000566078 RPP30P78346 268 aaKnown RBP24.28■■□□□ 1.48
CTCF-203ENST00000566078 ZNF48Q96MX3 618 aaPredicted RBP24.28■■□□□ 1.48
CTCF-203ENST00000566078 SMR3AQ99954 134 aa24.28■■□□□ 1.48
CTCF-203ENST00000566078 PITPNC1Q9UKF7 332 aa24.28■■□□□ 1.48
CTCF-203ENST00000566078 SONP18583 2426 aaKnown RBP24.28■■□□□ 1.48
CTCF-203ENST00000566078 TMEM217Q8N7C4 229 aa24.28■■□□□ 1.48
CTCF-203ENST00000566078 C5orf56Q8N8D9 126 aa24.28■■□□□ 1.48
CTCF-203ENST00000566078 SLC24A4Q8NFF2 622 aa24.28■■□□□ 1.48
CTCF-203ENST00000566078 C15orf62A8K5M9 175 aa24.27■■□□□ 1.48
CTCF-203ENST00000566078 IGHV4-59P01825 116 aa24.27■■□□□ 1.48
CTCF-203ENST00000566078 HNF1AP20823 631 aa24.27■■□□□ 1.48
CTCF-203ENST00000566078 IER3P46695 156 aa24.27■■□□□ 1.48
CTCF-203ENST00000566078 FXYD3Q14802 87 aa24.27■■□□□ 1.48
CTCF-203ENST00000566078 U3KQ87 197 aa24.27■■□□□ 1.48
CTCF-203ENST00000566078 HLA-DRB1P01911 266 aa24.26■■□□□ 1.47
CTCF-203ENST00000566078 WT1-ASQ06250 92 aa24.26■■□□□ 1.47
CTCF-203ENST00000566078 TEX22C9J3V5 150 aa24.25■■□□□ 1.47
CTCF-203ENST00000566078 INS-IGF2F8WCM5 200 aa24.25■■□□□ 1.47
CTCF-203ENST00000566078 FGF16O43320 207 aa24.25■■□□□ 1.47
CTCF-203ENST00000566078 NPY1RP25929 384 aa24.25■■□□□ 1.47
CTCF-203ENST00000566078 ERHP84090 104 aaKnown RBP24.25■■□□□ 1.47
CTCF-203ENST00000566078 OR8G2PQ6IF36 304 aa24.25■■□□□ 1.47
CTCF-203ENST00000566078 ZNF562Q6V9R5 426 aa24.25■■□□□ 1.47
CTCF-203ENST00000566078 Q6YL49 198 aa24.25■■□□□ 1.47
CTCF-203ENST00000566078 IGLC7A0M8Q6 106 aa24.24■■□□□ 1.47
CTCF-203ENST00000566078 OR8U8P0C7N1 319 aa24.24■■□□□ 1.47
CTCF-203ENST00000566078 APELAP0DMC3 54 aa24.24■■□□□ 1.47
CTCF-203ENST00000566078 CX3CL1P78423 397 aa24.24■■□□□ 1.47
CTCF-203ENST00000566078 HAPLN4Q86UW8 402 aa24.24■■□□□ 1.47
CTCF-203ENST00000566078 MRPL41Q8IXM3 137 aaKnown RBP24.24■■□□□ 1.47
CTCF-203ENST00000566078 OR5C1Q8NGR4 320 aa24.24■■□□□ 1.47
CTCF-203ENST00000566078 SSMEM1Q8WWF3 244 aa24.24■■□□□ 1.47
CTCF-203ENST00000566078 ARPC1AQ92747 370 aa24.24■■□□□ 1.47
CTCF-203ENST00000566078 TAAR5O14804 337 aa24.24■■□□□ 1.47
CTCF-203ENST00000566078 OR13C7P0DN81 318 aa24.24■■□□□ 1.47
CTCF-203ENST00000566078 HTR2BP41595 481 aa24.24■■□□□ 1.47
CTCF-203ENST00000566078 ARL16Q0P5N6 197 aa24.24■■□□□ 1.47
CTCF-203ENST00000566078 OR5R1Q8NH85 324 aa24.24■■□□□ 1.47
CTCF-203ENST00000566078 TMEM170AQ8WVE7 144 aa24.24■■□□□ 1.47
CTCF-203ENST00000566078 ZNF471Q9BX82 626 aaPredicted RBP24.24■■□□□ 1.47
CTCF-203ENST00000566078 IGHV7-81A0A0B4J1V7 117 aa24.23■■□□□ 1.47
CTCF-203ENST00000566078 LY6G6DO95868 133 aa24.23■■□□□ 1.47
CTCF-203ENST00000566078 REG1AP05451 166 aa24.23■■□□□ 1.47
CTCF-203ENST00000566078 SNCAP37840 140 aa24.23■■□□□ 1.47
CTCF-203ENST00000566078 NDPQ00604 133 aa24.23■■□□□ 1.47
CTCF-203ENST00000566078 CLINT1Q14677 625 aa24.23■■□□□ 1.47
CTCF-203ENST00000566078 OR1S2Q8NGQ3 325 aa24.23■■□□□ 1.47
CTCF-203ENST00000566078 ABHD5Q8WTS1 349 aa24.23■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms