RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 VSTM5A8MXK1 200 aa10.89□□□□□ -0.67
CLN3-210ENST00000563874 SNURFLB1AK76 121 aa10.89□□□□□ -0.67
CLN3-210ENST00000563874 IGFBP2P18065 325 aa10.89□□□□□ -0.67
CLN3-210ENST00000563874 SPRNQ5BIV9 151 aa10.89□□□□□ -0.67
CLN3-210ENST00000563874 MOB3BQ86TA1 216 aa10.89□□□□□ -0.67
CLN3-210ENST00000563874 OR8I2Q8N0Y5 310 aa10.89□□□□□ -0.67
CLN3-210ENST00000563874 IFI27L2Q9H2X8 130 aa10.89□□□□□ -0.67
CLN3-210ENST00000563874 IGKV3-15P01624 115 aa10.88□□□□□ -0.67
CLN3-210ENST00000563874 TPPP2P59282 170 aa10.88□□□□□ -0.67
CLN3-210ENST00000563874 BATFQ16520 125 aa10.88□□□□□ -0.67
CLN3-210ENST00000563874 TEPPQ6URK8 271 aa10.88□□□□□ -0.67
CLN3-210ENST00000563874 MIR17HGQ75NE6 70 aa10.88□□□□□ -0.67
CLN3-210ENST00000563874 DOLPP1Q86YN1 238 aa10.88□□□□□ -0.67
CLN3-210ENST00000563874 SAMD10Q9BYL1 202 aa10.88□□□□□ -0.67
CLN3-210ENST00000563874 LSM4Q9Y4Z0 139 aaKnown RBP10.88□□□□□ -0.67
CLN3-210ENST00000563874 GATA2P23769 480 aaPredicted RBP10.88□□□□□ -0.67
CLN3-210ENST00000563874 S100A7P31151 101 aa10.88□□□□□ -0.67
CLN3-210ENST00000563874 TCL1AP56279 114 aa10.88□□□□□ -0.67
CLN3-210ENST00000563874 KIAA1644Q3SXP7 199 aa10.88□□□□□ -0.67
CLN3-210ENST00000563874 FAM201AQ5SY85 155 aa10.88□□□□□ -0.67
CLN3-210ENST00000563874 TPTE2P1Q5T6R2 138 aa10.88□□□□□ -0.67
CLN3-210ENST00000563874 ASPHD1Q5U4P2 390 aa10.88□□□□□ -0.67
CLN3-210ENST00000563874 MMD2Q8IY49 270 aa10.88□□□□□ -0.67
CLN3-210ENST00000563874 FAM216AQ8WUB2 273 aa10.88□□□□□ -0.67
CLN3-210ENST00000563874 FER1L6-AS2Q96M78 137 aa10.88□□□□□ -0.67
CLN3-210ENST00000563874 CA2P00918 260 aa10.88□□□□□ -0.67
CLN3-210ENST00000563874 NPY1RP25929 384 aa10.88□□□□□ -0.67
CLN3-210ENST00000563874 RHOBP62745 196 aa10.88□□□□□ -0.67
CLN3-210ENST00000563874 FXYD3Q14802 87 aa10.88□□□□□ -0.67
CLN3-210ENST00000563874 EAF1Q96JC9 268 aaPredicted RBP10.88□□□□□ -0.67
CLN3-210ENST00000563874 RNF114Q9Y508 228 aa10.88□□□□□ -0.67
CLN3-210ENST00000563874 INTS1Q8N201 2190 aaKnown RBP10.87□□□□□ -0.67
CLN3-210ENST00000563874 LAMA5O15230 3695 aa10.87□□□□□ -0.67
CLN3-210ENST00000563874 ZNF891A8MT65 544 aaPredicted RBP10.87□□□□□ -0.67
CLN3-210ENST00000563874 YPEL1O60688 119 aa10.87□□□□□ -0.67
CLN3-210ENST00000563874 CRYBB3P26998 211 aa10.87□□□□□ -0.67
CLN3-210ENST00000563874 LOXL3P58215 753 aa10.87□□□□□ -0.67
CLN3-210ENST00000563874 SELENOTP62341 195 aa10.87□□□□□ -0.67
CLN3-210ENST00000563874 FAM90A1Q86YD7 464 aa10.87□□□□□ -0.67
CLN3-210ENST00000563874 ST6GALNAC3Q8NDV1 305 aa10.87□□□□□ -0.67
CLN3-210ENST00000563874 SLC24A4Q8NFF2 622 aa10.87□□□□□ -0.67
CLN3-210ENST00000563874 YPEL2Q96QA6 119 aa10.87□□□□□ -0.67
CLN3-210ENST00000563874 LRFN3Q9BTN0 628 aa10.87□□□□□ -0.67
CLN3-210ENST00000563874 RNASE7Q9H1E1 156 aaKnown RBP10.87□□□□□ -0.67
CLN3-210ENST00000563874 IRF2P14316 349 aa10.87□□□□□ -0.67
CLN3-210ENST00000563874 TMPRSS3P57727 454 aa10.87□□□□□ -0.67
CLN3-210ENST00000563874 PSG5Q15238 335 aa10.87□□□□□ -0.67
CLN3-210ENST00000563874 TXNDC17Q9BRA2 123 aa10.87□□□□□ -0.67
CLN3-210ENST00000563874 CLCF1Q9UBD9 225 aa10.87□□□□□ -0.67
CLN3-210ENST00000563874 DCHS1Q96JQ0 3298 aa10.87□□□□□ -0.67
CLN3-210ENST00000563874 KIR2DL2P43627 348 aaPredicted RBP10.86□□□□□ -0.67
CLN3-210ENST00000563874 LGALS4P56470 323 aa10.86□□□□□ -0.67
CLN3-210ENST00000563874 MSMPQ1L6U9 139 aa10.86□□□□□ -0.67
CLN3-210ENST00000563874 RPEL1Q2QD12 228 aa10.86□□□□□ -0.67
CLN3-210ENST00000563874 OR4A47Q6IF82 309 aa10.86□□□□□ -0.67
CLN3-210ENST00000563874 C9orf106Q8NAJ2 232 aa10.86□□□□□ -0.67
CLN3-210ENST00000563874 OR5AU1Q8NGC0 362 aa10.86□□□□□ -0.67
CLN3-210ENST00000563874 OR52E5Q8NH55 327 aa10.86□□□□□ -0.67
CLN3-210ENST00000563874 UHRF2Q96PU4 802 aa10.86□□□□□ -0.67
CLN3-210ENST00000563874 JPT1Q9UK76 154 aa10.86□□□□□ -0.67
CLN3-210ENST00000563874 OR10J4P0C629 311 aa10.86□□□□□ -0.67
CLN3-210ENST00000563874 CENPWQ5EE01 88 aa10.86□□□□□ -0.67
CLN3-210ENST00000563874 PQLC2Q6ZP29 291 aa10.86□□□□□ -0.67
CLN3-210ENST00000563874 C15orf61A6NNL5 157 aa10.86□□□□□ -0.67
CLN3-210ENST00000563874 KRTDAPP60985 99 aa10.86□□□□□ -0.67
CLN3-210ENST00000563874 DUX4L9Q6RFH8 374 aaPredicted RBP10.86□□□□□ -0.67
CLN3-210ENST00000563874 TMEM178AQ8NBL3 297 aa10.86□□□□□ -0.67
CLN3-210ENST00000563874 GCM1Q9NP62 436 aa10.86□□□□□ -0.67
CLN3-210ENST00000563874 NAT8BQ9UHF3 227 aa10.86□□□□□ -0.67
CLN3-210ENST00000563874 V9GYV3 84 aa10.86□□□□□ -0.67
CLN3-210ENST00000563874 IGHV2OR16-5A0A0B4J2B6 119 aa10.85□□□□□ -0.67
CLN3-210ENST00000563874 GNG4P50150 75 aa10.85□□□□□ -0.67
CLN3-210ENST00000563874 PAFAH1B2P68402 229 aa10.85□□□□□ -0.67
CLN3-210ENST00000563874 GCSAMQ8N6F7 178 aa10.85□□□□□ -0.67
CLN3-210ENST00000563874 GNB4Q9HAV0 340 aa10.85□□□□□ -0.67
CLN3-210ENST00000563874 ENY2Q9NPA8 101 aa10.85□□□□□ -0.67
CLN3-210ENST00000563874 ARFGEF3Q5TH69 2177 aa10.85□□□□□ -0.67
CLN3-210ENST00000563874 SAA2-SAA4A0A096LPE2 208 aa10.85□□□□□ -0.67
CLN3-210ENST00000563874 FAM90A9PA6NNJ1 464 aa10.85□□□□□ -0.67
CLN3-210ENST00000563874 SAA2P0DJI9 122 aaPredicted RBP10.85□□□□□ -0.67
CLN3-210ENST00000563874 MLANAQ16655 118 aa10.85□□□□□ -0.67
CLN3-210ENST00000563874 CT45A1Q5HYN5 189 aa10.85□□□□□ -0.67
CLN3-210ENST00000563874 TRAT1Q6PIZ9 186 aa10.85□□□□□ -0.67
CLN3-210ENST00000563874 OR4S2Q8NH73 311 aa10.85□□□□□ -0.67
CLN3-210ENST00000563874 CT45A3Q8NHU0 189 aa10.85□□□□□ -0.67
CLN3-210ENST00000563874 C22orf15Q8WYQ4 148 aa10.85□□□□□ -0.67
CLN3-210ENST00000563874 VAMP8Q9BV40 100 aa10.85□□□□□ -0.67
CLN3-210ENST00000563874 CALYQ9NYX4 217 aa10.85□□□□□ -0.67
CLN3-210ENST00000563874 CEP250Q9BV73 2442 aa10.84□□□□□ -0.67
CLN3-210ENST00000563874 IGHV1-18A0A0C4DH31 117 aa10.84□□□□□ -0.67
CLN3-210ENST00000563874 HELTA6NFD8 242 aa10.84□□□□□ -0.67
CLN3-210ENST00000563874 MGST3O14880 152 aa10.84□□□□□ -0.67
CLN3-210ENST00000563874 OR7C2O60412 319 aa10.84□□□□□ -0.67
CLN3-210ENST00000563874 MT-CO2P00403 227 aa10.84□□□□□ -0.67
CLN3-210ENST00000563874 RANP62826 216 aaKnown RBP10.84□□□□□ -0.67
CLN3-210ENST00000563874 RAB31Q13636 194 aa10.84□□□□□ -0.67
CLN3-210ENST00000563874 TEX43Q6ZNM6 134 aa10.84□□□□□ -0.67
CLN3-210ENST00000563874 S100A7AQ86SG5 101 aa10.84□□□□□ -0.67
CLN3-210ENST00000563874 MOGAT3Q86VF5 341 aa10.84□□□□□ -0.67
CLN3-210ENST00000563874 LYG1Q8N1E2 194 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms