RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 MMP24Q9Y5R2 645 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 IGHV2-70DA0A0C4DH43 119 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 A0A0G2JRQ6 117 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 C17orf112F2Z3M2 114 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 BUB1B-PAK6H3BSN5 160 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 DFFBO76075 338 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 IGHV4-59P01825 116 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 CT45A6P0DMU7 189 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 CT45A5P0DMU8 189 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 CT45A7P0DMV0 189 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 SLC25A4P12235 298 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 M6PRP20645 277 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 OR10J1P30954 320 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 GPR183P32249 361 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 CFHR2P36980 270 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 DSCR9P59020 149 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 HSPE1P61604 102 aaKnown RBP4.43□□□□□ -1.7
VPS13C-209ENST00000560637 EWSR1Q01844 656 aaKnown RBP eCLIP4.43□□□□□ -1.7
VPS13C-209ENST00000560637 MLANAQ16655 118 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 TOR2AQ5JU69 321 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 PPP1R27Q86WC6 154 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 GBGT1Q8N5D6 347 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 NTNG2Q96CW9 530 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 SGK494Q96LW2 274 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 RAB40CQ96S21 281 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 IFI27L2Q9H2X8 130 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 IFT22Q9H7X7 185 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 ZNF430Q9H8G1 570 aaPredicted RBP4.43□□□□□ -1.7
VPS13C-209ENST00000560637 RHOFQ9HBH0 211 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 FKBP11Q9NYL4 201 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 STAB1Q9NY15 2570 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 G3V318 75 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 FCN1O00602 326 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 NBR2O15453 112 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 TNFRSF9Q07011 255 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 GUCA2BQ16661 112 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 DEFB112Q30KQ8 113 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 NHLRC3Q5JS37 347 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 TPTE2P1Q5T6R2 138 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 FAM78BQ5VT40 261 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 DHRS11Q6UWP2 260 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 ASCL4Q6XD76 172 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 DTX2Q86UW9 622 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 BAP18Q8IXM2 172 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 OR8I2Q8N0Y5 310 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 TMEM252Q8N6L7 170 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 OR11H4Q8NGC9 324 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 Q8TCH9 128 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 FAM212BQ9NTI7 297 aaPredicted RBP4.43□□□□□ -1.7
VPS13C-209ENST00000560637 SIGLEC9Q9Y336 463 aa4.43□□□□□ -1.7
VPS13C-209ENST00000560637 IGKV3-20P01619 116 aa4.42□□□□□ -1.7
VPS13C-209ENST00000560637 H2AFB1P0C5Y9 115 aa4.42□□□□□ -1.7
VPS13C-209ENST00000560637 OR10J4P0C629 311 aa4.42□□□□□ -1.7
VPS13C-209ENST00000560637 NPBWR1P48145 328 aa4.42□□□□□ -1.7
VPS13C-209ENST00000560637 SUPT4H1P63272 117 aaKnown RBP4.42□□□□□ -1.7
VPS13C-209ENST00000560637 EXOSC2Q13868 293 aaKnown RBP4.42□□□□□ -1.7
VPS13C-209ENST00000560637 C3orf36Q3SXR2 165 aa4.42□□□□□ -1.7
VPS13C-209ENST00000560637 PXDC1Q5TGL8 231 aa4.42□□□□□ -1.7
VPS13C-209ENST00000560637 MIC13Q5XKP0 118 aa4.42□□□□□ -1.7
VPS13C-209ENST00000560637 PRR27Q6MZM9 219 aa4.42□□□□□ -1.7
VPS13C-209ENST00000560637 PRSS54Q6PEW0 395 aa4.42□□□□□ -1.7
VPS13C-209ENST00000560637 CLEC19AQ6UXS0 136 aa4.42□□□□□ -1.7
VPS13C-209ENST00000560637 SLC51BQ86UW2 128 aa4.42□□□□□ -1.7
VPS13C-209ENST00000560637 CIARTQ8N365 385 aaPredicted RBP4.42□□□□□ -1.7
VPS13C-209ENST00000560637 OR4X1Q8NH49 305 aa4.42□□□□□ -1.7
VPS13C-209ENST00000560637 PLEKHA2Q9HB19 425 aa4.42□□□□□ -1.7
VPS13C-209ENST00000560637 TANC2Q9HCD6 1990 aa4.42□□□□□ -1.7
VPS13C-209ENST00000560637 PUS1Q9Y606 427 aaKnown RBP eCLIP4.42□□□□□ -1.7
VPS13C-209ENST00000560637 A0A1B0GU03 582 aa4.42□□□□□ -1.7
VPS13C-209ENST00000560637 HOXA3O43365 443 aaPredicted RBP4.42□□□□□ -1.7
VPS13C-209ENST00000560637 CDS2O95674 445 aa4.42□□□□□ -1.7
VPS13C-209ENST00000560637 MGST1P10620 155 aaKnown RBP4.42□□□□□ -1.7
VPS13C-209ENST00000560637 CD99P14209 185 aa4.42□□□□□ -1.7
VPS13C-209ENST00000560637 HLA-GP17693 338 aa4.42□□□□□ -1.7
VPS13C-209ENST00000560637 KRTAP27-1Q3LI81 207 aa4.42□□□□□ -1.7
VPS13C-209ENST00000560637 TEX36Q5VZQ5 186 aa4.42□□□□□ -1.7
VPS13C-209ENST00000560637 CMTM2Q8TAZ6 248 aa4.42□□□□□ -1.7
VPS13C-209ENST00000560637 ARPC1AQ92747 370 aa4.42□□□□□ -1.7
VPS13C-209ENST00000560637 RPUSD4Q96CM3 377 aaKnown RBP4.42□□□□□ -1.7
VPS13C-209ENST00000560637 LINC00052Q96N35 136 aa4.42□□□□□ -1.7
VPS13C-209ENST00000560637 DUX3Q96PT4 197 aa4.42□□□□□ -1.7
VPS13C-209ENST00000560637 NABP2Q9BQ15 211 aa4.42□□□□□ -1.7
VPS13C-209ENST00000560637 WNT10AQ9GZT5 417 aa4.42□□□□□ -1.7
VPS13C-209ENST00000560637 FOXA2Q9Y261 457 aaPredicted RBP4.42□□□□□ -1.7
VPS13C-209ENST00000560637 IGHV1-69DA0A0B4J2H0 117 aa4.42□□□□□ -1.7
VPS13C-209ENST00000560637 OR2T8A6NH00 312 aa4.42□□□□□ -1.7
VPS13C-209ENST00000560637 NPIPB11E5RHQ5 1161 aa4.42□□□□□ -1.7
VPS13C-209ENST00000560637 RNASEK-C17orf49H0YIS7 233 aa4.42□□□□□ -1.7
VPS13C-209ENST00000560637 M0QZ24 198 aa4.42□□□□□ -1.7
VPS13C-209ENST00000560637 DNASE2O00115 360 aaPredicted RBP4.42□□□□□ -1.7
VPS13C-209ENST00000560637 NDUFS8O00217 210 aa4.42□□□□□ -1.7
VPS13C-209ENST00000560637 IGHV1-69P01742 117 aa4.42□□□□□ -1.7
VPS13C-209ENST00000560637 HKR1P10072 659 aa4.42□□□□□ -1.7
VPS13C-209ENST00000560637 AREGP15514 252 aa4.42□□□□□ -1.7
VPS13C-209ENST00000560637 UCP1P25874 307 aa4.42□□□□□ -1.7
VPS13C-209ENST00000560637 ZNF137PP52743 207 aa4.42□□□□□ -1.7
VPS13C-209ENST00000560637 CX3CL1P78423 397 aa4.42□□□□□ -1.7
VPS13C-209ENST00000560637 Q6ZRM9 215 aa4.42□□□□□ -1.7
VPS13C-209ENST00000560637 ST8SIA2Q92186 375 aa4.42□□□□□ -1.7
VPS13C-209ENST00000560637 MBNL3Q9NUK0 354 aaKnown RBP4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 109.3 ms