RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 ANKRD29Q8N6D5 301 aa0.68□□□□□ -2.3
USP3-209ENST00000558925 ZNF676Q8N7Q3 588 aa0.68□□□□□ -2.3
USP3-209ENST00000558925 Q8NDZ9 215 aa0.68□□□□□ -2.3
USP3-209ENST00000558925 OR5J2Q8NH18 312 aa0.68□□□□□ -2.3
USP3-209ENST00000558925 RNASE11Q8TAA1 199 aaKnown RBP0.68□□□□□ -2.3
USP3-209ENST00000558925 SPACA4Q8TDM5 124 aa0.68□□□□□ -2.3
USP3-209ENST00000558925 ULBP3Q9BZM4 244 aa0.68□□□□□ -2.3
USP3-209ENST00000558925 WDR61Q9GZS3 305 aaKnown RBP0.68□□□□□ -2.3
USP3-209ENST00000558925 DCSTAMPQ9H295 470 aa0.68□□□□□ -2.3
USP3-209ENST00000558925 ZNF106Q9H2Y7 1883 aaKnown RBP0.68□□□□□ -2.3
USP3-209ENST00000558925 C11orf68Q9H3H3 251 aaKnown RBP0.68□□□□□ -2.3
USP3-209ENST00000558925 EFCAB1Q9HAE3 211 aa0.68□□□□□ -2.3
USP3-209ENST00000558925 C14orf105Q9NVL8 296 aa0.68□□□□□ -2.3
USP3-209ENST00000558925 NDUFB11Q9NX14 153 aa0.68□□□□□ -2.3
USP3-209ENST00000558925 REREQ9P2R6 1566 aa0.68□□□□□ -2.3
USP3-209ENST00000558925 RPL26L1Q9UNX3 145 aaKnown RBP0.68□□□□□ -2.3
USP3-209ENST00000558925 FUT9Q9Y231 359 aa0.68□□□□□ -2.3
USP3-209ENST00000558925 TIMM22Q9Y584 194 aa0.68□□□□□ -2.3
USP3-209ENST00000558925 MED13Q9UHV7 2174 aa0.67□□□□□ -2.3
USP3-209ENST00000558925 CCDC144AA2RUR9 1427 aa0.67□□□□□ -2.3
USP3-209ENST00000558925 IGHV3-64A0A075B6Q5 118 aa0.67□□□□□ -2.3
USP3-209ENST00000558925 TRAV7A0A075B6U4 112 aa0.67□□□□□ -2.3
USP3-209ENST00000558925 TRAV38-1A0A0B4J264 116 aa0.67□□□□□ -2.3
USP3-209ENST00000558925 IGHV1-18A0A0C4DH31 117 aa0.67□□□□□ -2.3
USP3-209ENST00000558925 A0A0J9YW62 118 aa0.67□□□□□ -2.3
USP3-209ENST00000558925 ARRDC5A6NEK1 342 aa0.67□□□□□ -2.3
USP3-209ENST00000558925 TMEM210A6NLX4 147 aa0.67□□□□□ -2.3
USP3-209ENST00000558925 LY6LH3BQJ8 138 aa0.67□□□□□ -2.3
USP3-209ENST00000558925 H7C2G1 150 aa0.67□□□□□ -2.3
USP3-209ENST00000558925 PSMD12O00232 456 aaPredicted RBP0.67□□□□□ -2.3
USP3-209ENST00000558925 KLRC4O43908 158 aa0.67□□□□□ -2.3
USP3-209ENST00000558925 KRT75O95678 551 aa0.67□□□□□ -2.3
USP3-209ENST00000558925 IGKV1-5P01602 117 aa0.67□□□□□ -2.3
USP3-209ENST00000558925 PRM2P04554 102 aa0.67□□□□□ -2.3
USP3-209ENST00000558925 IFNA6P05013 189 aa0.67□□□□□ -2.3
USP3-209ENST00000558925 SERPINA7P05543 415 aa0.67□□□□□ -2.3
USP3-209ENST00000558925 RAP1GDS1P52306 607 aa0.67□□□□□ -2.3
USP3-209ENST00000558925 AQP4P55087 323 aa0.67□□□□□ -2.3
USP3-209ENST00000558925 TPI1P60174 286 aa0.67□□□□□ -2.3
USP3-209ENST00000558925 PSME3P61289 254 aa0.67□□□□□ -2.3
USP3-209ENST00000558925 SNRPD2P62316 118 aaKnown RBP0.67□□□□□ -2.3
USP3-209ENST00000558925 POLR2GP62487 172 aaKnown RBP eCLIP0.67□□□□□ -2.3
USP3-209ENST00000558925 SUPT4H1P63272 117 aaKnown RBP0.67□□□□□ -2.3
USP3-209ENST00000558925 HBA1P69905 142 aa0.67□□□□□ -2.3
USP3-209ENST00000558925 CTAG1AP78358 180 aa0.67□□□□□ -2.3
USP3-209ENST00000558925 CCL7P80098 99 aa0.67□□□□□ -2.3
USP3-209ENST00000558925 DEFB103AP81534 67 aa0.67□□□□□ -2.3
USP3-209ENST00000558925 ERHP84090 104 aaKnown RBP0.67□□□□□ -2.3
USP3-209ENST00000558925 TMEM155Q4W5P6 130 aa0.67□□□□□ -2.3
USP3-209ENST00000558925 PABPC1L2AQ5JQF8 200 aa0.67□□□□□ -2.3
USP3-209ENST00000558925 AADACL3Q5VUY0 350 aa0.67□□□□□ -2.3
USP3-209ENST00000558925 GLT8D1Q68CQ7 371 aa0.67□□□□□ -2.3
USP3-209ENST00000558925 LPCAT3Q6P1A2 487 aa0.67□□□□□ -2.3
USP3-209ENST00000558925 Q6ZS49 121 aa0.67□□□□□ -2.3
USP3-209ENST00000558925 OR52R1Q8NGF1 315 aa0.67□□□□□ -2.3
USP3-209ENST00000558925 OR8B12Q8NGG6 310 aa0.67□□□□□ -2.3
USP3-209ENST00000558925 ROPN1LQ96C74 230 aa0.67□□□□□ -2.3
USP3-209ENST00000558925 MRPS24Q96EL2 167 aaKnown RBP0.67□□□□□ -2.3
USP3-209ENST00000558925 DCUN1D1Q96GG9 259 aa0.67□□□□□ -2.3
USP3-209ENST00000558925 ZNF625Q96I27 306 aaPredicted RBP0.67□□□□□ -2.3
USP3-209ENST00000558925 DERL1Q9BUN8 251 aa0.67□□□□□ -2.3
USP3-209ENST00000558925 CXCL16Q9H2A7 254 aa0.67□□□□□ -2.3
USP3-209ENST00000558925 UQCC1Q9NVA1 299 aa0.67□□□□□ -2.3
USP3-209ENST00000558925 FBXL12Q9NXK8 326 aa0.67□□□□□ -2.3
USP3-209ENST00000558925 IL36BQ9NZH7 164 aa0.67□□□□□ -2.3
USP3-209ENST00000558925 SLC22A13Q9Y226 551 aa0.67□□□□□ -2.3
USP3-209ENST00000558925 MYOFQ9NZM1 2061 aa0.67□□□□□ -2.3
USP3-209ENST00000558925 FLT4P35916 1363 aa0.67□□□□□ -2.3
USP3-209ENST00000558925 ZNF532Q9HCE3 1301 aa0.66□□□□□ -2.3
USP3-209ENST00000558925 KIF13BQ9NQT8 1826 aa0.66□□□□□ -2.3
USP3-209ENST00000558925 RTEL1-TNFRSF6BF6WH68 1400 aa0.66□□□□□ -2.3
USP3-209ENST00000558925 NUP160Q12769 1436 aa0.66□□□□□ -2.3
USP3-209ENST00000558925 FBN1P35555 2871 aaKnown RBP0.66□□□□□ -2.3
USP3-209ENST00000558925 IGLV3-9A0A075B6K5 115 aa0.66□□□□□ -2.3
USP3-209ENST00000558925 TRAV26-2A0A0B4J265 109 aa0.66□□□□□ -2.3
USP3-209ENST00000558925 A0A0D9SEW6 157 aa0.66□□□□□ -2.3
USP3-209ENST00000558925 A0A1B0GV50 99 aa0.66□□□□□ -2.3
USP3-209ENST00000558925 A0A1B0GW54 56 aa0.66□□□□□ -2.3
USP3-209ENST00000558925 FADS1O60427 444 aa0.66□□□□□ -2.3
USP3-209ENST00000558925 CREBL2O60519 120 aaPredicted RBP0.66□□□□□ -2.3
USP3-209ENST00000558925 ZNF737O75373 536 aa0.66□□□□□ -2.3
USP3-209ENST00000558925 IGHV3-7P01780 117 aa0.66□□□□□ -2.3
USP3-209ENST00000558925 TTRP02766 147 aa0.66□□□□□ -2.3
USP3-209ENST00000558925 UCHL1P09936 223 aa0.66□□□□□ -2.3
USP3-209ENST00000558925 SULT1A3P0DMM9 295 aa0.66□□□□□ -2.3
USP3-209ENST00000558925 SULT1A4P0DMN0 295 aa0.66□□□□□ -2.3
USP3-209ENST00000558925 IFI30P13284 250 aa0.66□□□□□ -2.3
USP3-209ENST00000558925 MSNP26038 577 aaKnown RBP0.66□□□□□ -2.3
USP3-209ENST00000558925 HOXA6P31267 233 aa0.66□□□□□ -2.3
USP3-209ENST00000558925 CAPZBP47756 277 aa0.66□□□□□ -2.3
USP3-209ENST00000558925 EIF2B2P49770 351 aaKnown RBP0.66□□□□□ -2.3
USP3-209ENST00000558925 TMEM258P61165 79 aa0.66□□□□□ -2.3
USP3-209ENST00000558925 AP1S1P61966 158 aa0.66□□□□□ -2.3
USP3-209ENST00000558925 CCL20P78556 96 aa0.66□□□□□ -2.3
USP3-209ENST00000558925 MRPS15P82914 257 aaKnown RBP0.66□□□□□ -2.3
USP3-209ENST00000558925 REEP5Q00765 189 aa0.66□□□□□ -2.3
USP3-209ENST00000558925 CAV1Q03135 178 aa0.66□□□□□ -2.3
USP3-209ENST00000558925 RELAQ04206 551 aa0.66□□□□□ -2.3
USP3-209ENST00000558925 AKR1C1Q04828 323 aa0.66□□□□□ -2.3
USP3-209ENST00000558925 RPL18Q07020 188 aaKnown RBP0.66□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms