RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 WNK1Q9H4A3 2382 aa8.89□□□□□ -0.99
CCDC88C-212ENST00000556767 CGB1A6NKQ9 187 aa8.89□□□□□ -0.99
CCDC88C-212ENST00000556767 DBX1A6NMT0 343 aa8.89□□□□□ -0.99
CCDC88C-212ENST00000556767 NPIPB5A8MRT5 1133 aa8.89□□□□□ -0.99
CCDC88C-212ENST00000556767 LYRM1O43325 122 aa8.89□□□□□ -0.99
CCDC88C-212ENST00000556767 OR2J3O76001 311 aa8.89□□□□□ -0.99
CCDC88C-212ENST00000556767 NDUFB6O95139 128 aa8.89□□□□□ -0.99
CCDC88C-212ENST00000556767 CDS2O95674 445 aa8.89□□□□□ -0.99
CCDC88C-212ENST00000556767 LGALS1P09382 135 aaKnown RBP8.89□□□□□ -0.99
CCDC88C-212ENST00000556767 OR13C7P0DN81 318 aa8.89□□□□□ -0.99
CCDC88C-212ENST00000556767 PSMB6P28072 239 aa8.89□□□□□ -0.99
CCDC88C-212ENST00000556767 RHOGP84095 191 aa8.89□□□□□ -0.99
CCDC88C-212ENST00000556767 TMEM128Q5BJH2 165 aa8.89□□□□□ -0.99
CCDC88C-212ENST00000556767 THOC7Q6I9Y2 204 aaKnown RBP8.89□□□□□ -0.99
CCDC88C-212ENST00000556767 ETV3LQ6ZN32 361 aa8.89□□□□□ -0.99
CCDC88C-212ENST00000556767 C19orf35Q6ZS72 473 aa8.89□□□□□ -0.99
CCDC88C-212ENST00000556767 CADM3Q8N126 398 aa8.89□□□□□ -0.99
CCDC88C-212ENST00000556767 OR10W1Q8NGF6 305 aa8.89□□□□□ -0.99
CCDC88C-212ENST00000556767 OR1N2Q8NGR9 330 aa8.89□□□□□ -0.99
CCDC88C-212ENST00000556767 OR5B3Q8NH48 314 aa8.89□□□□□ -0.99
CCDC88C-212ENST00000556767 LHFPL5Q8TAF8 219 aa8.89□□□□□ -0.99
CCDC88C-212ENST00000556767 GALNT14Q96FL9 552 aa8.89□□□□□ -0.99
CCDC88C-212ENST00000556767 TMEM56Q96MV1 263 aa8.89□□□□□ -0.99
CCDC88C-212ENST00000556767 PDCD10Q9BUL8 212 aa8.89□□□□□ -0.99
CCDC88C-212ENST00000556767 A0A0G2JRQ6 117 aa8.88□□□□□ -0.99
CCDC88C-212ENST00000556767 IGLC7A0M8Q6 106 aa8.88□□□□□ -0.99
CCDC88C-212ENST00000556767 ANKRD34BA5PLL1 514 aa8.88□□□□□ -0.99
CCDC88C-212ENST00000556767 PLA2G10O15496 165 aa8.88□□□□□ -0.99
CCDC88C-212ENST00000556767 IFNA17P01571 189 aa8.88□□□□□ -0.99
CCDC88C-212ENST00000556767 FGF2P09038 288 aa8.88□□□□□ -0.99
CCDC88C-212ENST00000556767 SUPT4H1P63272 117 aaKnown RBP8.88□□□□□ -0.99
CCDC88C-212ENST00000556767 SRPXP78539 464 aa8.88□□□□□ -0.99
CCDC88C-212ENST00000556767 ATP5G2Q06055 141 aa8.88□□□□□ -0.99
CCDC88C-212ENST00000556767 TMEM187Q14656 261 aa8.88□□□□□ -0.99
CCDC88C-212ENST00000556767 SPINK9Q5DT21 86 aa8.88□□□□□ -0.99
CCDC88C-212ENST00000556767 HSD17B13Q7Z5P4 300 aaPredicted RBP8.88□□□□□ -0.99
CCDC88C-212ENST00000556767 MRPL41Q8IXM3 137 aaKnown RBP8.88□□□□□ -0.99
CCDC88C-212ENST00000556767 LGI3Q8N145 548 aa8.88□□□□□ -0.99
CCDC88C-212ENST00000556767 LSM10Q969L4 123 aaKnown RBP8.88□□□□□ -0.99
CCDC88C-212ENST00000556767 USMG5Q96IX5 58 aa8.88□□□□□ -0.99
CCDC88C-212ENST00000556767 SRSF8Q9BRL6 282 aaKnown RBP8.88□□□□□ -0.99
CCDC88C-212ENST00000556767 NDUFA4L2Q9NRX3 87 aa8.88□□□□□ -0.99
CCDC88C-212ENST00000556767 TMEM14BQ9NUH8 114 aa8.88□□□□□ -0.99
CCDC88C-212ENST00000556767 FBXL7Q9UJT9 491 aa8.88□□□□□ -0.99
CCDC88C-212ENST00000556767 FLVCR2Q9UPI3 526 aa8.88□□□□□ -0.99
CCDC88C-212ENST00000556767 TMEM56-RWDD3S4R434 201 aa8.88□□□□□ -0.99
CCDC88C-212ENST00000556767 A0A0B4J293 547 aa8.87□□□□□ -0.99
CCDC88C-212ENST00000556767 FAM223BA6NKX1 122 aa8.87□□□□□ -0.99
CCDC88C-212ENST00000556767 I3L521 148 aa8.87□□□□□ -0.99
CCDC88C-212ENST00000556767 CYB5BO43169 146 aa8.87□□□□□ -0.99
CCDC88C-212ENST00000556767 BRI3O95415 125 aa8.87□□□□□ -0.99
CCDC88C-212ENST00000556767 SFT2D2O95562 160 aa8.87□□□□□ -0.99
CCDC88C-212ENST00000556767 CRYGCP07315 174 aa8.87□□□□□ -0.99
CCDC88C-212ENST00000556767 HIST1H1BP16401 226 aaKnown RBP8.87□□□□□ -0.99
CCDC88C-212ENST00000556767 CTRB1P17538 263 aa8.87□□□□□ -0.99
CCDC88C-212ENST00000556767 BTCP35070 178 aa8.87□□□□□ -0.99
CCDC88C-212ENST00000556767 HSPE1P61604 102 aaKnown RBP8.87□□□□□ -0.99
CCDC88C-212ENST00000556767 ZNF616Q08AN1 781 aa8.87□□□□□ -0.99
CCDC88C-212ENST00000556767 PPP1R1AQ13522 171 aa8.87□□□□□ -0.99
CCDC88C-212ENST00000556767 CTRB2Q6GPI1 263 aa8.87□□□□□ -0.99
CCDC88C-212ENST00000556767 MZT2BQ6NZ67 158 aa8.87□□□□□ -0.99
CCDC88C-212ENST00000556767 FAM219AQ8IW50 185 aa8.87□□□□□ -0.99
CCDC88C-212ENST00000556767 FAM223AQ8IWN6 122 aa8.87□□□□□ -0.99
CCDC88C-212ENST00000556767 SLC35G3Q8N808 338 aa8.87□□□□□ -0.99
CCDC88C-212ENST00000556767 LINC00482Q8N8I6 264 aa8.87□□□□□ -0.99
CCDC88C-212ENST00000556767 NECAP1Q8NC96 275 aa8.87□□□□□ -0.99
CCDC88C-212ENST00000556767 IL22RA2Q969J5 263 aa8.87□□□□□ -0.99
CCDC88C-212ENST00000556767 GPR146Q96CH1 333 aa8.87□□□□□ -0.99
CCDC88C-212ENST00000556767 P2RX4Q99571 388 aa8.87□□□□□ -0.99
CCDC88C-212ENST00000556767 PLEKHA3Q9HB20 300 aa8.87□□□□□ -0.99
CCDC88C-212ENST00000556767 ENY2Q9NPA8 101 aa8.87□□□□□ -0.99
CCDC88C-212ENST00000556767 CACNG5Q9UF02 275 aa8.87□□□□□ -0.99
CCDC88C-212ENST00000556767 IGHV4OR15-8A0A075B7B6 117 aa8.86□□□□□ -0.99
CCDC88C-212ENST00000556767 A0A087WW49 117 aa8.86□□□□□ -0.99
CCDC88C-212ENST00000556767 LINC01619G3V211 115 aa8.86□□□□□ -0.99
CCDC88C-212ENST00000556767 ST8SIA3O43173 380 aa8.86□□□□□ -0.99
CCDC88C-212ENST00000556767 UPK1BO75841 260 aa8.86□□□□□ -0.99
CCDC88C-212ENST00000556767 HSPB1P04792 205 aaKnown RBP8.86□□□□□ -0.99
CCDC88C-212ENST00000556767 OR8U8P0C7N1 319 aa8.86□□□□□ -0.99
CCDC88C-212ENST00000556767 P0C879 139 aa8.86□□□□□ -0.99
CCDC88C-212ENST00000556767 IGLL1P15814 213 aa8.86□□□□□ -0.99
CCDC88C-212ENST00000556767 ANXA7P20073 488 aaKnown RBP8.86□□□□□ -0.99
CCDC88C-212ENST00000556767 PRCDQ00LT1 54 aa8.86□□□□□ -0.99
CCDC88C-212ENST00000556767 RUNX1Q01196 453 aa8.86□□□□□ -0.99
CCDC88C-212ENST00000556767 WT1-ASQ06250 92 aa8.86□□□□□ -0.99
CCDC88C-212ENST00000556767 EXOSC2Q13868 293 aaKnown RBP8.86□□□□□ -0.99
CCDC88C-212ENST00000556767 C15orf32Q32M92 178 aa8.86□□□□□ -0.99
CCDC88C-212ENST00000556767 C4orf46Q504U0 113 aa8.86□□□□□ -0.99
CCDC88C-212ENST00000556767 SLC25A24Q6NUK1 477 aa8.86□□□□□ -0.99
CCDC88C-212ENST00000556767 LYZL2Q7Z4W2 148 aa8.86□□□□□ -0.99
CCDC88C-212ENST00000556767 ZNF429Q86V71 674 aa8.86□□□□□ -0.99
CCDC88C-212ENST00000556767 C1QL4Q86Z23 238 aa8.86□□□□□ -0.99
CCDC88C-212ENST00000556767 CTNNBIP1Q9NSA3 81 aaPredicted RBP8.86□□□□□ -0.99
CCDC88C-212ENST00000556767 S4R3C0 116 aa8.86□□□□□ -0.99
CCDC88C-212ENST00000556767 TRAV6A0A075B6T7 132 aa8.85□□□□□ -0.99
CCDC88C-212ENST00000556767 TRBV9A0A0B4J1U6 114 aa8.85□□□□□ -0.99
CCDC88C-212ENST00000556767 A0A0B4J2A0 478 aa8.85□□□□□ -0.99
CCDC88C-212ENST00000556767 PIGBOS1A0A0B4J2F0 54 aa8.85□□□□□ -0.99
CCDC88C-212ENST00000556767 FAM240BA0A1B0GVZ2 78 aa8.85□□□□□ -0.99
CCDC88C-212ENST00000556767 NXPH3O95157 252 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms