RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 DBX1A6NMT0 343 aa10.51□□□□□ -0.73
SHMT2-219ENST00000555563 C15orf61A6NNL5 157 aa10.51□□□□□ -0.73
SHMT2-219ENST00000555563 DISC1C4P0D8 188 aa10.51□□□□□ -0.73
SHMT2-219ENST00000555563 BMPR1BO00238 502 aa10.51□□□□□ -0.73
SHMT2-219ENST00000555563 NDUFB8O95169 186 aa10.51□□□□□ -0.73
SHMT2-219ENST00000555563 DHFRP00374 187 aa10.51□□□□□ -0.73
SHMT2-219ENST00000555563 SERPINE2P07093 398 aa10.51□□□□□ -0.73
SHMT2-219ENST00000555563 CTSDP07339 412 aaPredicted RBP10.51□□□□□ -0.73
SHMT2-219ENST00000555563 TRAPPC2P0DI81 140 aa10.51□□□□□ -0.73
SHMT2-219ENST00000555563 TRAPPC2BP0DI82 140 aa10.51□□□□□ -0.73
SHMT2-219ENST00000555563 DEFA4P12838 97 aa10.51□□□□□ -0.73
SHMT2-219ENST00000555563 WT1-ASQ06250 92 aa10.51□□□□□ -0.73
SHMT2-219ENST00000555563 KLK9Q2XQG4 91 aa10.51□□□□□ -0.73
SHMT2-219ENST00000555563 THOC7Q6I9Y2 204 aaKnown RBP10.51□□□□□ -0.73
SHMT2-219ENST00000555563 CCDC71LQ8N9Z2 235 aa10.51□□□□□ -0.73
SHMT2-219ENST00000555563 OR1L8Q8NGR8 309 aa10.51□□□□□ -0.73
SHMT2-219ENST00000555563 TRIM63Q969Q1 353 aa10.51□□□□□ -0.73
SHMT2-219ENST00000555563 PRR25Q96S07 402 aa10.51□□□□□ -0.73
SHMT2-219ENST00000555563 HINT2Q9BX68 163 aa10.51□□□□□ -0.73
SHMT2-219ENST00000555563 NDUFA4L2Q9NRX3 87 aa10.51□□□□□ -0.73
SHMT2-219ENST00000555563 KLK9Q9UKQ9 250 aa10.51□□□□□ -0.73
SHMT2-219ENST00000555563 S4R3C0 116 aa10.51□□□□□ -0.73
SHMT2-219ENST00000555563 C3orf85A0A1B0GTC6 90 aa10.5□□□□□ -0.73
SHMT2-219ENST00000555563 HIST1H1BP16401 226 aaKnown RBP10.5□□□□□ -0.73
SHMT2-219ENST00000555563 S100A5P33763 92 aa10.5□□□□□ -0.73
SHMT2-219ENST00000555563 SYNJ2BPP57105 145 aa10.5□□□□□ -0.73
SHMT2-219ENST00000555563 KLF5Q13887 457 aaPredicted RBP10.5□□□□□ -0.73
SHMT2-219ENST00000555563 ZNF79Q15937 498 aa10.5□□□□□ -0.73
SHMT2-219ENST00000555563 RPEL1Q2QD12 228 aa10.5□□□□□ -0.73
SHMT2-219ENST00000555563 SP6Q3SY56 376 aa10.5□□□□□ -0.73
SHMT2-219ENST00000555563 H2BFWTQ7Z2G1 175 aa10.5□□□□□ -0.73
SHMT2-219ENST00000555563 HAPLN4Q86UW8 402 aa10.5□□□□□ -0.73
SHMT2-219ENST00000555563 GDPD1Q8N9F7 314 aa10.5□□□□□ -0.73
SHMT2-219ENST00000555563 OR51S1Q8NGJ8 323 aa10.5□□□□□ -0.73
SHMT2-219ENST00000555563 OR5B3Q8NH48 314 aa10.5□□□□□ -0.73
SHMT2-219ENST00000555563 LSM10Q969L4 123 aaKnown RBP10.5□□□□□ -0.73
SHMT2-219ENST00000555563 CCDC140Q96MF4 163 aa10.5□□□□□ -0.73
SHMT2-219ENST00000555563 TSC22D3Q99576 134 aa10.5□□□□□ -0.73
SHMT2-219ENST00000555563 TMEM14BQ9NUH8 114 aa10.5□□□□□ -0.73
SHMT2-219ENST00000555563 SLC2A8Q9NY64 477 aa10.5□□□□□ -0.73
SHMT2-219ENST00000555563 ZNF256Q9Y2P7 627 aaPredicted RBP10.5□□□□□ -0.73
SHMT2-219ENST00000555563 DMRT1Q9Y5R6 373 aa10.5□□□□□ -0.73
SHMT2-219ENST00000555563 MFSD2BA6NFX1 497 aa10.49□□□□□ -0.73
SHMT2-219ENST00000555563 PPP5D1E7EU14 171 aa10.49□□□□□ -0.73
SHMT2-219ENST00000555563 IGKV1-5P01602 117 aa10.49□□□□□ -0.73
SHMT2-219ENST00000555563 IGHV3-23P01764 117 aa10.49□□□□□ -0.73
SHMT2-219ENST00000555563 OR13C7P0DN81 318 aa10.49□□□□□ -0.73
SHMT2-219ENST00000555563 SURF2Q15527 256 aaPredicted RBP10.49□□□□□ -0.73
SHMT2-219ENST00000555563 IZUMO4Q1ZYL8 232 aa10.49□□□□□ -0.73
SHMT2-219ENST00000555563 TRIM16LQ309B1 348 aa10.49□□□□□ -0.73
SHMT2-219ENST00000555563 PYDC2Q56P42 97 aa10.49□□□□□ -0.73
SHMT2-219ENST00000555563 HSD17B13Q7Z5P4 300 aaPredicted RBP10.49□□□□□ -0.73
SHMT2-219ENST00000555563 CCDC190Q86UF4 302 aa10.49□□□□□ -0.73
SHMT2-219ENST00000555563 OR9G4Q8NGQ1 327 aa10.49□□□□□ -0.73
SHMT2-219ENST00000555563 PRRT1Q99946 306 aa10.49□□□□□ -0.73
SHMT2-219ENST00000555563 RTBDNQ9BSG5 229 aaPredicted RBP10.49□□□□□ -0.73
SHMT2-219ENST00000555563 THAP7Q9BT49 309 aaPredicted RBP10.49□□□□□ -0.73
SHMT2-219ENST00000555563 ELOVL1Q9BW60 279 aa10.49□□□□□ -0.73
SHMT2-219ENST00000555563 C5orf66Q9H5L9 145 aa10.49□□□□□ -0.73
SHMT2-219ENST00000555563 MCUBQ9NWR8 336 aa10.49□□□□□ -0.73
SHMT2-219ENST00000555563 FKBP11Q9NYL4 201 aa10.49□□□□□ -0.73
SHMT2-219ENST00000555563 C14orf166Q9Y224 244 aaKnown RBP10.49□□□□□ -0.73
SHMT2-219ENST00000555563 LY86O95711 162 aa10.48□□□□□ -0.73
SHMT2-219ENST00000555563 OR5AC1P0C628 307 aa10.48□□□□□ -0.73
SHMT2-219ENST00000555563 P0C879 139 aa10.48□□□□□ -0.73
SHMT2-219ENST00000555563 UCP1P25874 307 aa10.48□□□□□ -0.73
SHMT2-219ENST00000555563 AKR1C2P52895 323 aa10.48□□□□□ -0.73
SHMT2-219ENST00000555563 KLF9Q13886 244 aaPredicted RBP10.48□□□□□ -0.73
SHMT2-219ENST00000555563 DEFB121Q5J5C9 76 aa10.48□□□□□ -0.73
SHMT2-219ENST00000555563 FAM209BQ5JX69 171 aa10.48□□□□□ -0.73
SHMT2-219ENST00000555563 IL34Q6ZMJ4 242 aa10.48□□□□□ -0.73
SHMT2-219ENST00000555563 OR4A16Q8NH70 328 aa10.48□□□□□ -0.73
SHMT2-219ENST00000555563 EEF1AKMT3Q96AZ1 226 aa10.48□□□□□ -0.73
SHMT2-219ENST00000555563 OR4C12Q96R67 309 aa10.48□□□□□ -0.73
SHMT2-219ENST00000555563 B3GALNT1O75752 331 aa10.47□□□□□ -0.73
SHMT2-219ENST00000555563 HLA-AP01891 365 aaKnown RBP10.47□□□□□ -0.73
SHMT2-219ENST00000555563 SPNP16150 400 aa10.47□□□□□ -0.73
SHMT2-219ENST00000555563 MECP2P51608 486 aaKnown RBP10.47□□□□□ -0.73
SHMT2-219ENST00000555563 MFAP2P55001 183 aa10.47□□□□□ -0.73
SHMT2-219ENST00000555563 CLEC19AQ6UXS0 136 aa10.47□□□□□ -0.73
SHMT2-219ENST00000555563 Q8N402 240 aa10.47□□□□□ -0.73
SHMT2-219ENST00000555563 OR6Q1Q8NGQ2 317 aa10.47□□□□□ -0.73
SHMT2-219ENST00000555563 NAA60Q9H7X0 242 aa10.47□□□□□ -0.73
SHMT2-219ENST00000555563 SCP2D1Q9UJQ7 156 aa10.47□□□□□ -0.73
SHMT2-219ENST00000555563 GPR132Q9UNW8 380 aa10.47□□□□□ -0.73
SHMT2-219ENST00000555563 F11RQ9Y624 299 aaKnown RBP10.47□□□□□ -0.73
SHMT2-219ENST00000555563 DNAH3Q8TD57 4116 aa10.47□□□□□ -0.73
SHMT2-219ENST00000555563 A0A0G2JRQ6 117 aa10.46□□□□□ -0.73
SHMT2-219ENST00000555563 TEX13DA0A0J9YY54 714 aaPredicted RBP10.46□□□□□ -0.73
SHMT2-219ENST00000555563 CRYM-AS1A6NIL9 109 aa10.46□□□□□ -0.73
SHMT2-219ENST00000555563 ARL3P36405 182 aa10.46□□□□□ -0.73
SHMT2-219ENST00000555563 PRCDQ00LT1 54 aa10.46□□□□□ -0.73
SHMT2-219ENST00000555563 DCTN2Q13561 401 aaKnown RBP10.46□□□□□ -0.73
SHMT2-219ENST00000555563 TATDN3Q17R31 274 aa10.46□□□□□ -0.73
SHMT2-219ENST00000555563 LHFPL5Q8TAF8 219 aa10.46□□□□□ -0.73
SHMT2-219ENST00000555563 ZNF502Q8TBZ5 544 aa10.46□□□□□ -0.73
SHMT2-219ENST00000555563 CXorf58Q96LI9 332 aa10.46□□□□□ -0.73
SHMT2-219ENST00000555563 TMEM56Q96MV1 263 aa10.46□□□□□ -0.73
SHMT2-219ENST00000555563 TMEM222Q9H0R3 208 aa10.46□□□□□ -0.73
SHMT2-219ENST00000555563 THYN1Q9P016 225 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms