RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 PAX5Q02548 391 aa12.36□□□□□ -0.43
USP28-214ENST00000545540 PSG5Q15238 335 aa12.36□□□□□ -0.43
USP28-214ENST00000545540 FAM90A1Q86YD7 464 aa12.36□□□□□ -0.43
USP28-214ENST00000545540 PRR7Q8TB68 274 aa12.36□□□□□ -0.43
USP28-214ENST00000545540 LINC00479Q96M42 142 aa12.36□□□□□ -0.43
USP28-214ENST00000545540 FAM103A1Q9BTL3 118 aaKnown RBP12.36□□□□□ -0.43
USP28-214ENST00000545540 RNASE7Q9H1E1 156 aaKnown RBP12.36□□□□□ -0.43
USP28-214ENST00000545540 MAP1AP78559 2803 aaPredicted RBP12.35□□□□□ -0.43
USP28-214ENST00000545540 ATRXP46100 2492 aa12.35□□□□□ -0.43
USP28-214ENST00000545540 PRR33A8MZF0 331 aa12.35□□□□□ -0.43
USP28-214ENST00000545540 MGST3O14880 152 aa12.35□□□□□ -0.43
USP28-214ENST00000545540 EREGO14944 169 aa12.35□□□□□ -0.43
USP28-214ENST00000545540 NPY1RP25929 384 aa12.35□□□□□ -0.43
USP28-214ENST00000545540 IER3P46695 156 aa12.35□□□□□ -0.43
USP28-214ENST00000545540 MRPS11P82912 194 aaKnown RBP12.35□□□□□ -0.43
USP28-214ENST00000545540 C17orf58Q2M2W7 97 aa12.35□□□□□ -0.43
USP28-214ENST00000545540 REC114Q7Z4M0 266 aa12.35□□□□□ -0.43
USP28-214ENST00000545540 SARAFQ96BY9 339 aa12.35□□□□□ -0.43
USP28-214ENST00000545540 IGKV1OR2-108A0A075B7D4 117 aa12.34□□□□□ -0.43
USP28-214ENST00000545540 TRAV5A0A0B4J249 113 aa12.34□□□□□ -0.43
USP28-214ENST00000545540 TMPRSS2O15393 492 aa12.34□□□□□ -0.43
USP28-214ENST00000545540 OR7C2O60412 319 aa12.34□□□□□ -0.43
USP28-214ENST00000545540 IGHG3P01860 377 aa12.34□□□□□ -0.43
USP28-214ENST00000545540 GCHFRP30047 84 aa12.34□□□□□ -0.43
USP28-214ENST00000545540 LGALS4P56470 323 aa12.34□□□□□ -0.43
USP28-214ENST00000545540 HTD2P86397 168 aa12.34□□□□□ -0.43
USP28-214ENST00000545540 GUSBP1Q15486 140 aa12.34□□□□□ -0.43
USP28-214ENST00000545540 SLC24A4Q8NFF2 622 aa12.34□□□□□ -0.43
USP28-214ENST00000545540 OR9G1Q8NH87 305 aa12.34□□□□□ -0.43
USP28-214ENST00000545540 TP53TG5Q9Y2B4 290 aa12.34□□□□□ -0.43
USP28-214ENST00000545540 SLC25A15Q9Y619 301 aa12.34□□□□□ -0.43
USP28-214ENST00000545540 A8MWP6 167 aa12.34□□□□□ -0.43
USP28-214ENST00000545540 J3QW42 95 aa12.34□□□□□ -0.43
USP28-214ENST00000545540 PLAUP00749 431 aa12.34□□□□□ -0.43
USP28-214ENST00000545540 STAG3L2P0CL84 134 aa12.34□□□□□ -0.43
USP28-214ENST00000545540 STAG3L3P0CL85 134 aa12.34□□□□□ -0.43
USP28-214ENST00000545540 RAB4BP61018 213 aa12.34□□□□□ -0.43
USP28-214ENST00000545540 TGIF2LXQ8IUE1 241 aa12.34□□□□□ -0.43
USP28-214ENST00000545540 TMEM18Q96B42 140 aa12.34□□□□□ -0.43
USP28-214ENST00000545540 ELOVL5Q9NYP7 299 aa12.34□□□□□ -0.43
USP28-214ENST00000545540 SPTAN1Q13813 2472 aaKnown RBP12.34□□□□□ -0.43
USP28-214ENST00000545540 PDE6DO43924 150 aa12.34□□□□□ -0.43
USP28-214ENST00000545540 FTH1P19P0C7X4 201 aa12.34□□□□□ -0.43
USP28-214ENST00000545540 ERVFC1-1P60608 527 aa12.34□□□□□ -0.43
USP28-214ENST00000545540 DIAPH2-AS1Q14236 149 aa12.34□□□□□ -0.43
USP28-214ENST00000545540 KRTCAP3Q53RY4 240 aa12.34□□□□□ -0.43
USP28-214ENST00000545540 OR10G8Q8NGN5 311 aa12.34□□□□□ -0.43
USP28-214ENST00000545540 NPVFQ9HCQ7 196 aa12.34□□□□□ -0.43
USP28-214ENST00000545540 ENY2Q9NPA8 101 aa12.34□□□□□ -0.43
USP28-214ENST00000545540 PRSS46E5RG02 174 aa12.33□□□□□ -0.44
USP28-214ENST00000545540 KLF3P57682 345 aaPredicted RBP12.33□□□□□ -0.44
USP28-214ENST00000545540 RPL15P61313 204 aaKnown RBP12.33□□□□□ -0.44
USP28-214ENST00000545540 C10orf55Q5SWW7 151 aa12.33□□□□□ -0.44
USP28-214ENST00000545540 MORN5Q5VZ52 161 aa12.33□□□□□ -0.44
USP28-214ENST00000545540 TEPPQ6URK8 271 aa12.33□□□□□ -0.44
USP28-214ENST00000545540 OR8I2Q8N0Y5 310 aa12.33□□□□□ -0.44
USP28-214ENST00000545540 ACY3Q96HD9 319 aa12.33□□□□□ -0.44
USP28-214ENST00000545540 PLSCR4Q9NRQ2 329 aa12.33□□□□□ -0.44
USP28-214ENST00000545540 TRAV17A0A0B4J275 112 aa12.33□□□□□ -0.44
USP28-214ENST00000545540 CCL3L1P16619 93 aa12.33□□□□□ -0.44
USP28-214ENST00000545540 G0S2P27469 103 aa12.33□□□□□ -0.44
USP28-214ENST00000545540 OPRK1P41145 380 aa12.33□□□□□ -0.44
USP28-214ENST00000545540 CYB5R2Q6BCY4 276 aa12.33□□□□□ -0.44
USP28-214ENST00000545540 CISD2Q8N5K1 135 aaKnown RBP12.33□□□□□ -0.44
USP28-214ENST00000545540 KCNIP2Q9NS61 270 aa12.33□□□□□ -0.44
USP28-214ENST00000545540 OR51B2Q9Y5P1 312 aa12.33□□□□□ -0.44
USP28-214ENST00000545540 E7EUB6 86 aa12.33□□□□□ -0.44
USP28-214ENST00000545540 J3QR06 171 aa12.33□□□□□ -0.44
USP28-214ENST00000545540 SSBP2P81877 361 aaPredicted RBP12.33□□□□□ -0.44
USP28-214ENST00000545540 PQLC2Q6ZP29 291 aa12.33□□□□□ -0.44
USP28-214ENST00000545540 ZCCHC14Q8WYQ9 949 aaKnown RBP12.33□□□□□ -0.44
USP28-214ENST00000545540 MS4A10Q96PG2 267 aa12.33□□□□□ -0.44
USP28-214ENST00000545540 SERTAD4Q9NUC0 356 aa12.33□□□□□ -0.44
USP28-214ENST00000545540 FKBP11Q9NYL4 201 aa12.33□□□□□ -0.44
USP28-214ENST00000545540 JPT1Q9UK76 154 aa12.33□□□□□ -0.44
USP28-214ENST00000545540 IGHV3-21A0A0B4J1V1 117 aa12.32□□□□□ -0.44
USP28-214ENST00000545540 CXorf1O96002 111 aa12.32□□□□□ -0.44
USP28-214ENST00000545540 IGLV1-44P01699 117 aa12.32□□□□□ -0.44
USP28-214ENST00000545540 MGST1P10620 155 aaKnown RBP12.32□□□□□ -0.44
USP28-214ENST00000545540 C19orf35Q6ZS72 473 aa12.32□□□□□ -0.44
USP28-214ENST00000545540 GBGT1Q8N5D6 347 aa12.32□□□□□ -0.44
USP28-214ENST00000545540 OR2T6Q8NHC8 308 aa12.32□□□□□ -0.44
USP28-214ENST00000545540 UHRF2Q96PU4 802 aa12.32□□□□□ -0.44
USP28-214ENST00000545540 IDI2-AS1Q9NZ38 188 aa12.32□□□□□ -0.44
USP28-214ENST00000545540 SPTBN1Q01082 2364 aaKnown RBP12.32□□□□□ -0.44
USP28-214ENST00000545540 TGOLN2O43493 480 aa12.32□□□□□ -0.44
USP28-214ENST00000545540 YPEL1O60688 119 aa12.32□□□□□ -0.44
USP28-214ENST00000545540 SRP14P37108 136 aaKnown RBP12.32□□□□□ -0.44
USP28-214ENST00000545540 SUMO1P63165 101 aaKnown RBP12.32□□□□□ -0.44
USP28-214ENST00000545540 YPEL2Q96QA6 119 aa12.32□□□□□ -0.44
USP28-214ENST00000545540 VENTXO95231 258 aa12.31□□□□□ -0.44
USP28-214ENST00000545540 REG1AP05451 166 aa12.31□□□□□ -0.44
USP28-214ENST00000545540 OR10J1P30954 320 aa12.31□□□□□ -0.44
USP28-214ENST00000545540 CDKN1AP38936 164 aa12.31□□□□□ -0.44
USP28-214ENST00000545540 OR4S2Q8NH73 311 aa12.31□□□□□ -0.44
USP28-214ENST00000545540 SSBP3Q9BWW4 388 aaPredicted RBP12.31□□□□□ -0.44
USP28-214ENST00000545540 WNK2Q9Y3S1 2297 aa12.31□□□□□ -0.44
USP28-214ENST00000545540 DYSFO75923 2080 aa12.31□□□□□ -0.44
USP28-214ENST00000545540 C15orf61A6NNL5 157 aa12.31□□□□□ -0.44
USP28-214ENST00000545540 FCN1O00602 326 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms